Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SYN2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6854 synapsin II chr3 + 12040861 - 12046361 12045861 Transcription Factor Binding Sites   Download all TFBS in the SYN2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP4_C2H2_full_monomeric_17_1 SELEX + 12045796 12045812 7.0E-06 CTGGCCCCGCCCCTGCC 17 V_OBOX6_01_M01445 TRANSFAC + 12045330 12045344 3.0E-06 AACAGCGGATTATTC 15 V_SP1_Q6_01_M00931 TRANSFAC + 12045756 12045765 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 12045799 12045808 4.0E-06 GGGGCGGGGC 10 V_SP1_02_M01303 TRANSFAC + 12045780 12045790 8.0E-06 GGGGCGGGGGC 11 V_SP1_Q6_M00196 TRANSFAC + 12045754 12045766 4.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 12045798 12045810 4.0E-06 CAGGGGCGGGGCC 13 V_SP4_Q5_M01273 TRANSFAC - 12045755 12045765 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 12045779 12045789 7.0E-06 CCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 12045799 12045809 8.0E-06 GCCCCGCCCCT 11 V_SP1_Q2_01_M00933 TRANSFAC + 12045800 12045809 7.0E-06 CCCCGCCCCT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 12045804 12045817 2.0E-06 GGCGGGGCAGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 12045754 12045766 6.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 12045798 12045810 3.0E-06 CAGGGGCGGGGCC 13 V_OBOX6_02_M03068 TRANSFAC + 12045330 12045344 3.0E-06 AACAGCGGATTATTC 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.