Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

STX5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6811 syntaxin 5 chr11 - 62599063 - 62604563 62599563 Transcription Factor Binding Sites   Download all TFBS in the STX5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CENPB_CENPB_full_monomeric_15_1 SELEX + 62599405 62599419 6.0E-06 CCCTCTTAAAGCGAA 15 SPIC_ETS_full_monomeric_14_1 SELEX + 62599173 62599186 1.0E-06 TGAAACAGGAAGTC 14 FOXL1_forkhead_full_dimeric_13_1 SELEX - 62599164 62599176 7.0E-06 TTCAAATAAACAC 13 NFYA_MA0060.1 JASPAR - 62599644 62599659 1.0E-06 CTTAGCCAATGGGAGG 16 SPIB_ETS_DBD_monomeric_14_1 SELEX + 62599173 62599186 5.0E-06 TGAAACAGGAAGTC 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 62599165 62599175 8.0E-06 TCAAATAAACA 11 FOXI1_MA0042.1 JASPAR + 62599162 62599173 1.0E-06 GGGTGTTTATTT 12 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX + 62599530 62599542 5.0E-06 GGCCACGTCACCT 13 SP1_C2H2_DBD_monomeric_11_1 SELEX + 62599550 62599560 7.0E-06 ACCCCACCCCC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 62599165 62599175 3.0E-06 TCAAATAAACA 11 MZF1_5-13_MA0057.1 JASPAR + 62599145 62599154 4.0E-06 GGAGGGGGAA 10 CREB3L1_bZIP_full_dimeric_14_1 SELEX + 62599529 62599542 1.0E-05 CGGCCACGTCACCT 14 GLI2_C2H2_DBD_monomeric_12_1 SELEX - 62599774 62599785 6.0E-06 ACGACCACTCTG 12 SPI1_ETS_full_monomeric_14_1 SELEX + 62599173 62599186 6.0E-06 TGAAACAGGAAGTC 14 RUNX1_MA0002.2 JASPAR + 62600130 62600140 5.0E-06 GTCTGTGGTCT 11 RREB1_MA0073.1 JASPAR + 62598796 62598815 0.0E+00 ACCCCAATCAACAAATCCCC 20 V_CEBPG_Q6_M00622 TRANSFAC - 62600285 62600297 4.0E-06 CTGATGTCACAAA 13 V_IPF1_02_M01234 TRANSFAC - 62599229 62599238 2.0E-06 AGCTAATGAG 10 V_DUXL_01_M01390 TRANSFAC + 62598795 62598811 2.0E-06 CACCCCAATCAACAAAT 17 V_ZFP410_04_M02936 TRANSFAC - 62599817 62599833 6.0E-06 TCAGTCCGCCCCAACCT 17 V_SMAD3_Q6_01_M01888 TRANSFAC + 62598514 62598526 7.0E-06 AGGCAGACAGAAA 13 V_NF1_Q6_01_M00806 TRANSFAC - 62600206 62600222 2.0E-06 ATGGGCTGCTGCCAAGA 17 V_ETS_B_M00340 TRANSFAC + 62599176 62599189 4.0E-06 AACAGGAAGTCCCA 14 V_SP1_Q6_01_M00931 TRANSFAC - 62599671 62599680 7.0E-06 GGGGCGGGGT 10 V_AREB6_04_M00415 TRANSFAC - 62599172 62599180 8.0E-06 CTGTTTCAA 9 V_SP1_02_M01303 TRANSFAC - 62599670 62599680 8.0E-06 GGGGCGGGGTC 11 V_AP4_Q6_01_M00927 TRANSFAC + 62599740 62599748 6.0E-06 ACCAGCTGC 9 V_EVX1_01_M01475 TRANSFAC - 62599224 62599240 4.0E-06 TTAGCTAATGAGTGGTT 17 V_EVX1_01_M01475 TRANSFAC + 62599225 62599241 7.0E-06 ACCACTCATTAGCTAAG 17 V_NFY_Q6_01_M00775 TRANSFAC - 62599648 62599660 3.0E-06 CCTTAGCCAATGG 13 V_STAT4_Q4_M01666 TRANSFAC - 62599163 62599176 6.0E-06 TTCAAATAAACACC 14 V_EVX2_01_M01386 TRANSFAC + 62599224 62599240 7.0E-06 AACCACTCATTAGCTAA 17 V_EVX2_01_M01386 TRANSFAC - 62599225 62599241 8.0E-06 CTTAGCTAATGAGTGGT 17 V_ZNF219_01_M01122 TRANSFAC + 62599188 62599199 5.0E-06 CACCCCCCGCCC 12 V_RUNX1_01_M02257 TRANSFAC + 62600130 62600140 5.0E-06 GTCTGTGGTCT 11 V_NGFIC_01_M00244 TRANSFAC - 62600249 62600260 7.0E-06 TGGCGTGGGTGG 12 V_SP4_03_M02810 TRANSFAC - 62599564 62599580 3.0E-06 GGGACCGCCCCCTCGTC 17 V_MAZ_Q6_01_M02023 TRANSFAC - 62599339 62599352 7.0E-06 GGCGGGGGGAAGGG 14 V_LHX2_01_M01325 TRANSFAC + 62599225 62599241 7.0E-06 ACCACTCATTAGCTAAG 17 V_SZF11_01_M01109 TRANSFAC - 62598896 62598910 8.0E-06 ACAGGGGAAAAGCGG 15 V_DUXBL_01_M02968 TRANSFAC + 62598795 62598811 2.0E-06 CACCCCAATCAACAAAT 17 V_ZBRK1_01_M01105 TRANSFAC + 62599307 62599321 6.0E-06 GGCCGGCAGGACTTG 15 V_SPIB_01_M01204 TRANSFAC + 62599173 62599189 3.0E-06 TGAAACAGGAAGTCCCA 17 V_RREB1_01_M00257 TRANSFAC + 62599614 62599627 7.0E-06 CCCCACACCCAAAC 14 V_TAXCREB_02_M00115 TRANSFAC + 62598717 62598731 9.0E-06 GAGACGCATAACCTC 15 V_CETS1P54_01_M00032 TRANSFAC + 62599177 62599186 9.0E-06 ACAGGAAGTC 10 V_SP1_01_M00008 TRANSFAC - 62599671 62599680 3.0E-06 GGGGCGGGGT 10 V_EMX2_01_M01461 TRANSFAC - 62599224 62599240 4.0E-06 TTAGCTAATGAGTGGTT 17 V_EMX2_01_M01461 TRANSFAC + 62599225 62599241 6.0E-06 ACCACTCATTAGCTAAG 17 V_ELK1_01_M00007 TRANSFAC + 62599174 62599189 0.0E+00 GAAACAGGAAGTCCCA 16 V_ELF1_Q6_M00746 TRANSFAC + 62599174 62599185 2.0E-06 GAAACAGGAAGT 12 V_HFH8_01_M00294 TRANSFAC + 62599162 62599174 2.0E-06 GGGTGTTTATTTG 13 V_E2F_03_M00516 TRANSFAC + 62598842 62598853 6.0E-06 TTTCGCGCCCAG 12 V_CAAT_01_M00254 TRANSFAC - 62599648 62599659 8.0E-06 CTTAGCCAATGG 12 V_SMAD4_04_M02898 TRANSFAC + 62599342 62599358 3.0E-06 TTCCCCCCGCCAGTCGT 17 V_NFY_01_M00287 TRANSFAC - 62599644 62599659 2.0E-06 CTTAGCCAATGGGAGG 16 V_FPM315_01_M01587 TRANSFAC - 62599479 62599490 6.0E-06 CGGGGAGGAGGC 12 V_PADS_C_M00211 TRANSFAC + 62600133 62600141 4.0E-06 TGTGGTCTC 9 V_ASCL2_04_M02841 TRANSFAC + 62599055 62599070 8.0E-06 CTAACCCAGCCCTTTC 16 V_STAT1STAT1_Q3_M01212 TRANSFAC - 62599166 62599178 1.0E-05 GTTTCAAATAAAC 13 V_ZFP281_01_M01597 TRANSFAC - 62599551 62599561 1.0E-06 TGGGGGTGGGG 11 V_HFH3_01_M00289 TRANSFAC + 62599162 62599174 2.0E-06 GGGTGTTTATTTG 13 V_FOXJ2_01_M00422 TRANSFAC - 62599160 62599177 1.0E-06 TTTCAAATAAACACCCAG 18 V_SMAD3_Q6_M00701 TRANSFAC - 62598514 62598522 1.0E-05 TGTCTGCCT 9 V_HOXB3_01_M01330 TRANSFAC - 62599224 62599240 4.0E-06 TTAGCTAATGAGTGGTT 17 V_NFYA_Q5_M02106 TRANSFAC - 62599644 62599657 4.0E-06 TAGCCAATGGGAGG 14 V_NF1_Q6_M00193 TRANSFAC + 62600206 62600223 8.0E-06 TCTTGGCAGCAGCCCATG 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.