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SS18 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6760 synovial sarcoma translocation, chromosome 18 chr18 - 23670111 - 23675611 23670611 Transcription Factor Binding Sites   Download all TFBS in the SS18 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 23669511 23669528 1.0E-05 ACTTTAAATATTTTTGTT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 23669819 23669836 1.0E-05 TCAATAAATATTTGCTGC 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 23669819 23669836 6.0E-06 GCAGCAAATATTTATTGA 18 TBX20_TBX_full_monomeric_11_1 SELEX + 23671448 23671458 7.0E-06 AAGTTGTGAAA 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX + 23669779 23669789 3.0E-06 CATGACTCACC 11 E2F3_E2F_DBD_dimeric_18_2 SELEX + 23669808 23669825 9.0E-06 AAAATAGGCGCTCAATAA 18 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 23671299 23671318 3.0E-06 CTGACCCGAAACCGGGACAC 20 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 23671299 23671318 3.0E-06 GTGTCCCGGTTTCGGGTCAG 20 POU2F1_POU_DBD_dimeric_14_1 SELEX + 23669513 23669526 3.0E-06 CAAAAATATTTAAA 14 GRHL1_CP2_full_dimeric_12_1 SELEX + 23670277 23670288 1.0E-06 AAAACCGGTTCA 12 GRHL1_CP2_full_dimeric_12_1 SELEX - 23670277 23670288 3.0E-06 TGAACCGGTTTT 12 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 23670749 23670765 6.0E-06 ACGGTCAAGAAAGTTCG 17 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 23670749 23670766 4.0E-06 GACGGTCAAGAAAGTTCG 18 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 23669513 23669526 4.0E-06 CAAAAATATTTAAA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 23669513 23669526 6.0E-06 CAAAAATATTTAAA 14 RUNX2_RUNX_DBD_dimeric_18_1 SELEX + 23669785 23669802 6.0E-06 TCACCACAGTAGCCTCAG 18 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 23670749 23670765 7.0E-06 ACGGTCAAGAAAGTTCG 17 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 23669513 23669526 1.0E-05 CAAAAATATTTAAA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 23669514 23669525 3.0E-06 AAAAATATTTAA 12 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 23669513 23669526 9.0E-06 CAAAAATATTTAAA 14 TFCP2_CP2_full_dimeric_10_1 SELEX + 23670278 23670287 1.0E-06 AAACCGGTTC 10 TFCP2_CP2_full_dimeric_10_1 SELEX - 23670278 23670287 4.0E-06 GAACCGGTTT 10 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 23669701 23669711 8.0E-06 ATAAATACACA 11 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 23670749 23670765 5.0E-06 ACGGTCAAGAAAGTTCG 17 FEV_MA0156.1 JASPAR + 23670859 23670866 1.0E-05 CAGGAAAT 8 FEV_MA0156.1 JASPAR + 23670913 23670920 1.0E-05 CAGGAAAT 8 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 23668588 23668604 5.0E-06 CTGATTGTAGCAATTAA 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 23668588 23668604 4.0E-06 TTAATTGCTACAATCAG 17 JDP2_bZIP_full_dimeric_9_1 SELEX + 23669780 23669788 7.0E-06 ATGACTCAC 9 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 23669514 23669525 5.0E-06 AAAAATATTTAA 12 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 23671480 23671490 1.0E-05 TCTCTTAAAAA 11 FOXI1_forkhead_full_dimeric_17_1 SELEX + 23669518 23669534 3.0E-06 ATATTTAAAGTAAACTG 17 GRHL1_CP2_DBD_dimeric_10_1 SELEX + 23670278 23670287 1.0E-06 AAACCGGTTC 10 GRHL1_CP2_DBD_dimeric_10_1 SELEX - 23670278 23670287 4.0E-06 GAACCGGTTT 10 FOXC1_MA0032.1 JASPAR - 23671492 23671499 7.0E-06 AGTAAGTA 8 RUNX1_MA0002.2 JASPAR - 23670521 23670531 8.0E-06 GTCTGTGGCTT 11 POU3F3_POU_DBD_dimeric_12_1 SELEX + 23669514 23669525 3.0E-06 AAAAATATTTAA 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 23669353 23669363 7.0E-06 GTTCATAAAAT 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 23669506 23669518 6.0E-06 AACAAAACAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 23669508 23669520 3.0E-06 CAAAACAAAAATA 13 E2F2_E2F_DBD_dimeric_18_1 SELEX + 23669808 23669825 5.0E-06 AAAATAGGCGCTCAATAA 18 RUNX3_RUNX_DBD_dimeric_18_1 SELEX + 23669785 23669802 8.0E-06 TCACCACAGTAGCCTCAG 18 RUNX3_RUNX_DBD_dimeric_18_1 SELEX + 23670512 23670529 9.0E-06 GGGCCGCGAAAGCCACAG 18 V_FOXP1_01_M00987 TRANSFAC - 23669502 23669521 0.0E+00 ATATTTTTGTTTTGTTTTAT 20 V_FOXP1_01_M00987 TRANSFAC - 23669506 23669525 8.0E-06 TTAAATATTTTTGTTTTGTT 20 V_HNF3B_01_M00131 TRANSFAC - 23669511 23669525 1.0E-06 TTAAATATTTTTGTT 15 V_TCF3_01_M01594 TRANSFAC - 23669506 23669518 1.0E-06 TTTTTGTTTTGTT 13 V_LEF1_04_M02774 TRANSFAC - 23668678 23668694 7.0E-06 GAGTCCCTTGATCTTAC 17 V_CDX2_Q5_01_M01659 TRANSFAC + 23669819 23669829 2.0E-06 TCAATAAATAT 11 V_BACH2_01_M00490 TRANSFAC - 23669779 23669789 3.0E-06 GGTGAGTCATG 11 V_ATF5_01_M01295 TRANSFAC + 23671044 23671054 5.0E-06 CTTCATCCTTA 11 V_ZFP410_04_M02936 TRANSFAC - 23670630 23670646 2.0E-06 TCCCCCCTCCCCGCATT 17 V_FOXD3_01_M00130 TRANSFAC - 23669512 23669523 8.0E-06 AAATATTTTTGT 12 V_BCL6_01_M01183 TRANSFAC - 23669504 23669519 3.0E-06 ATTTTTGTTTTGTTTT 16 V_BCL6_01_M01183 TRANSFAC - 23669515 23669530 0.0E+00 TTACTTTAAATATTTT 16 V_DEAF1_02_M01002 TRANSFAC - 23670548 23670572 6.0E-06 GAGCGCTCGGGACTTGCCGATAGTG 25 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 23669380 23669391 1.0E-05 AAATGTCAAAAG 12 V_SRY_02_M00160 TRANSFAC + 23669503 23669514 3.0E-06 TAAAACAAAACA 12 V_SRY_02_M00160 TRANSFAC + 23669508 23669519 9.0E-06 CAAAACAAAAAT 12 V_PRX2_Q2_M02115 TRANSFAC + 23669522 23669530 7.0E-06 TTAAAGTAA 9 V_HOXD13_01_M01404 TRANSFAC + 23669351 23669366 9.0E-06 TTGTTCATAAAATAAA 16 V_CDX_Q5_M00991 TRANSFAC + 23669509 23669526 5.0E-06 AAAACAAAAATATTTAAA 18 V_MEF2A_Q6_M02024 TRANSFAC + 23669519 23669528 9.0E-06 TATTTAAAGT 10 V_TRF1_01_M01237 TRANSFAC - 23671294 23671308 2.0E-06 TTCGGGTCAGGGTTA 15 V_ELF4_04_M02850 TRANSFAC + 23669353 23669369 8.0E-06 GTTCATAAAATAAAGCA 17 V_ELF4_04_M02850 TRANSFAC + 23669817 23669833 7.0E-06 GCTCAATAAATATTTGC 17 V_BACH1_01_M00495 TRANSFAC - 23669777 23669791 1.0E-06 GTGGTGAGTCATGGT 15 V_SOX7_03_M02807 TRANSFAC + 23669499 23669520 7.0E-06 AGCATAAAACAAAACAAAAATA 22 V_SOX7_03_M02807 TRANSFAC + 23669504 23669525 0.0E+00 AAAACAAAACAAAAATATTTAA 22 V_POU3F2_01_M00463 TRANSFAC - 23669357 23669370 8.0E-06 TTGCTTTATTTTAT 14 V_ZFP105_03_M02827 TRANSFAC + 23669507 23669521 2.0E-06 ACAAAACAAAAATAT 15 V_CART1_01_M00416 TRANSFAC + 23668548 23668565 1.0E-05 AAATAATTCATCTAAGTA 18 V_RUNX1_01_M02257 TRANSFAC - 23670521 23670531 8.0E-06 GTCTGTGGCTT 11 V_ARID5A_03_M02736 TRANSFAC + 23669515 23669528 4.0E-06 AAAATATTTAAAGT 14 V_ARID5A_03_M02736 TRANSFAC - 23669819 23669832 7.0E-06 CAAATATTTATTGA 14 V_HIC1_06_M02867 TRANSFAC - 23670786 23670801 2.0E-06 GGGGGTGCCCATAAGG 16 V_SP4_03_M02810 TRANSFAC + 23670936 23670952 4.0E-06 CGGCCCGCCCCCTTCGC 17 V_KROX_Q6_M00982 TRANSFAC + 23670358 23670371 1.0E-05 CCCGCCTCCGCCTC 14 V_HSF1_01_M00146 TRANSFAC - 23670749 23670758 5.0E-06 AGAAAGTTCG 10 V_SP1_Q6_M00196 TRANSFAC + 23670077 23670089 7.0E-06 GCGGGGCGGGGCG 13 V_HNF3_Q6_M00791 TRANSFAC + 23669508 23669520 8.0E-06 CAAAACAAAAATA 13 V_HNF3_Q6_M00791 TRANSFAC + 23669818 23669830 9.0E-06 CTCAATAAATATT 13 V_IRC900814_04_M02870 TRANSFAC - 23669709 23669724 9.0E-06 AATGTAAGTCGTGATA 16 V_MEF2_03_M00232 TRANSFAC - 23669513 23669534 3.0E-06 CAGTTTACTTTAAATATTTTTG 22 V_TATA_C_M00216 TRANSFAC + 23669678 23669687 6.0E-06 CCTTTAAAAA 10 V_NFE4_Q5_M02105 TRANSFAC + 23670968 23670979 9.0E-06 CTCCCTCTCCGG 12 V_OCT1_04_M00138 TRANSFAC + 23669512 23669534 5.0E-06 ACAAAAATATTTAAAGTAAACTG 23 V_IK2_01_M00087 TRANSFAC - 23670327 23670338 3.0E-06 GTTTGGGAACAC 12 V_SP1SP3_Q4_M01219 TRANSFAC + 23670940 23670950 4.0E-06 CCGCCCCCTTC 11 V_MEF2_04_M00233 TRANSFAC - 23669513 23669534 8.0E-06 CAGTTTACTTTAAATATTTTTG 22 V_XFD2_01_M00268 TRANSFAC + 23669819 23669832 5.0E-06 TCAATAAATATTTG 14 V_HNF4_DR1_Q3_M00764 TRANSFAC - 23669375 23669387 6.0E-06 TGACATTTGCCCA 13 V_MAFK_Q3_M02022 TRANSFAC + 23669781 23669791 8.0E-06 TGACTCACCAC 11 V_TBP_06_M02814 TRANSFAC - 23669515 23669530 1.0E-05 TTACTTTAAATATTTT 16 V_SOX11_03_M02795 TRANSFAC + 23669501 23669517 1.0E-05 CATAAAACAAAACAAAA 17 V_ISGF4G_04_M02875 TRANSFAC - 23671027 23671040 2.0E-06 GAAAAACTGAACTA 14 V_FOXO1_Q5_M01216 TRANSFAC + 23669508 23669516 8.0E-06 CAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC - 23671475 23671483 1.0E-05 AAAAACAGA 9 V_MAF_Q6_01_M00983 TRANSFAC - 23669780 23669790 8.0E-06 TGGTGAGTCAT 11 V_KAISO_01_M01119 TRANSFAC - 23671401 23671410 1.0E-06 TTCCTGCTAA 10 V_GATA4_Q3_M00632 TRANSFAC - 23671473 23671484 8.0E-06 AAAAAACAGAGA 12 V_TFIII_Q6_M00706 TRANSFAC - 23670967 23670975 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC - 23670078 23670088 2.0E-06 GCCCCGCCCCG 11 V_AP1_Q4_01_M00926 TRANSFAC - 23669780 23669787 1.0E-05 TGAGTCAT 8 V_GABPBETA_Q3_M01876 TRANSFAC + 23670912 23670922 7.0E-06 ACAGGAAATGC 11 V_FAC1_01_M00456 TRANSFAC + 23669505 23669518 0.0E+00 AAACAAAACAAAAA 14 V_DR1_Q3_M00762 TRANSFAC + 23669375 23669387 6.0E-06 TGGGCAAATGTCA 13 V_ZBTB3_03_M02825 TRANSFAC + 23669316 23669332 1.0E-06 GAAAGCACTGCATTTCC 17 V_FOXL1_02_M02857 TRANSFAC + 23669499 23669514 1.0E-06 AGCATAAAACAAAACA 16 V_FOXL1_02_M02857 TRANSFAC + 23669504 23669519 0.0E+00 AAAACAAAACAAAAAT 16 V_FOXJ3_06_M02855 TRANSFAC + 23669503 23669519 0.0E+00 TAAAACAAAACAAAAAT 17 V_NANOG_01_M01123 TRANSFAC - 23670861 23670872 0.0E+00 GGGACCATTTCC 12 V_GATA3_01_M00077 TRANSFAC + 23671160 23671168 4.0E-06 GAGATAGGG 9 V_FRA1_Q5_M01267 TRANSFAC - 23669780 23669787 1.0E-05 TGAGTCAT 8 V_FOXO3_01_M00477 TRANSFAC - 23669505 23669518 6.0E-06 TTTTTGTTTTGTTT 14 V_TBX15_02_M01264 TRANSFAC + 23671441 23671458 3.0E-06 TGGAATTAAGTTGTGAAA 18 V_ETS1_B_M00339 TRANSFAC + 23670912 23670926 4.0E-06 ACAGGAAATGCGAGC 15 V_IRF1_Q6_01_M01881 TRANSFAC + 23670456 23670469 8.0E-06 CGGTTTCACCTTCT 14 V_SRF_06_M02916 TRANSFAC + 23669500 23669516 5.0E-06 GCATAAAACAAAACAAA 17 V_SRF_06_M02916 TRANSFAC + 23669501 23669517 3.0E-06 CATAAAACAAAACAAAA 17 V_SRF_06_M02916 TRANSFAC + 23669502 23669518 9.0E-06 ATAAAACAAAACAAAAA 17 V_HFH3_01_M00289 TRANSFAC - 23669819 23669831 9.0E-06 AAATATTTATTGA 13 V_VDR_Q3_M00444 TRANSFAC - 23670488 23670502 3.0E-06 GAGGCAAGGGGGAGA 15 V_NFE2_Q6_M02104 TRANSFAC + 23669779 23669794 1.0E-06 CATGACTCACCACAGT 16 V_SOX2_Q6_M01272 TRANSFAC - 23669507 23669522 1.0E-06 AATATTTTTGTTTTGT 16 V_HOXA10_01_M01464 TRANSFAC + 23669351 23669366 5.0E-06 TTGTTCATAAAATAAA 16 V_HOXD10_01_M01375 TRANSFAC + 23669351 23669367 8.0E-06 TTGTTCATAAAATAAAG 17 V_FEV_01_M02269 TRANSFAC + 23670859 23670866 1.0E-05 CAGGAAAT 8 V_FEV_01_M02269 TRANSFAC + 23670913 23670920 1.0E-05 CAGGAAAT 8 V_PPARA_01_M00242 TRANSFAC + 23669368 23669387 5.0E-06 CAACAGTTGGGCAAATGTCA 20 V_NANOG_02_M01247 TRANSFAC + 23669504 23669523 1.0E-06 AAAACAAAACAAAAATATTT 20 V_HSF1_Q6_01_M02017 TRANSFAC + 23670750 23670763 5.0E-06 GAACTTTCTTGACC 14 V_ER_Q6_M00191 TRANSFAC + 23671289 23671307 2.0E-06 GAAAGTAACCCTGACCCGA 19

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