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SLC6A13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6540 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 chr12 - 371539 - 377039 372039 Transcription Factor Binding Sites   Download all TFBS in the SLC6A13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 372059 372067 8.0E-06 GCACTTGAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 368363 368372 5.0E-06 GTAATAAATA 10 TBX1_TBX_DBD_dimeric_20_2 SELEX + 372923 372942 6.0E-06 TTGACACCAGAGAGTGTGGG 20 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 368363 368372 9.0E-06 GTAATAAATA 10 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 372219 372234 9.0E-06 ACACTTCATAAGCTCA 16 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 372025 372036 5.0E-06 ACTTTAAATAGC 12 ZNF435_C2H2_full_dimeric_18_1 SELEX + 370722 370739 2.0E-06 CATGTTAACAGAACTTTC 18 NFIL3_MA0025.1 JASPAR + 376912 376922 2.0E-06 TTATGTAACTA 11 DBP_bZIP_full_dimeric_12_1 SELEX - 376910 376921 1.0E-05 AGTTACATAAGT 12 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 368463 368476 6.0E-06 GTCATCATCAACAG 14 TEAD1_TEA_full_monomeric_10_1 SELEX + 372088 372097 5.0E-06 CACATTCCAC 10 MEF2B_MADS_full_dimeric_12_1 SELEX - 372025 372036 3.0E-06 ACTTTAAATAGC 12 MEF2A_MA0052.1 JASPAR + 372026 372035 4.0E-06 CTATTTAAAG 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 368363 368373 4.0E-06 AGTAATAAATA 11 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 373007 373016 5.0E-06 AACAGCTGCC 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 373005 373018 8.0E-06 ATAACAGCTGCCAT 14 Gata1_MA0035.2 JASPAR + 373684 373694 1.0E-05 AGTGATAAGGA 11 TBX20_TBX_full_dimeric_16_1 SELEX - 372916 372931 2.0E-06 TGGTGTCAAAGTCTGA 16 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 372089 372096 1.0E-05 ACATTCCA 8 Myf_MA0055.1 JASPAR - 373727 373738 8.0E-06 CAACAGCAGCAG 12 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 372088 372097 4.0E-06 CACATTCCAC 10 RUNX1_MA0002.2 JASPAR - 368436 368446 5.0E-06 TTCTGTGGTCT 11 RUNX1_MA0002.2 JASPAR - 368496 368506 5.0E-06 TTCTGTGGTCT 11 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 368363 368373 3.0E-06 AGTAATAAATA 11 TEAD1_MA0090.1 JASPAR + 372088 372099 4.0E-06 CACATTCCACCC 12 V_OBOX6_01_M01445 TRANSFAC + 373024 373038 5.0E-06 CTTAAGGGATTATTC 15 V_DBX1_01_M01483 TRANSFAC + 368359 368375 9.0E-06 CTACTATTTATTACTTA 17 V_DBX1_01_M01483 TRANSFAC - 368359 368375 1.0E-06 TAAGTAATAAATAGTAG 17 V_OBOX5_05_M03066 TRANSFAC + 373025 373041 5.0E-06 TTAAGGGATTATTCACA 17 V_GATA1_Q6_M02004 TRANSFAC + 373681 373695 7.0E-06 GTCAGTGATAAGGAC 15 V_ALX4_01_M00619 TRANSFAC - 373031 373043 4.0E-06 ACTGTGAATAATC 13 V_HNF1_02_M01379 TRANSFAC - 367406 367422 2.0E-06 TGGAGGTTAACTTGAAT 17 V_CBF_02_M01080 TRANSFAC - 368373 368388 1.0E-05 TGTTCTGTGGTCTTAA 16 V_CBF_02_M01080 TRANSFAC - 368433 368448 1.0E-05 TGTTCTGTGGTCTTAA 16 V_CBF_02_M01080 TRANSFAC - 368493 368508 1.0E-05 TGTTCTGTGGTCTTAA 16 V_MEF2_02_M00231 TRANSFAC - 368357 368378 6.0E-06 TCTTAAGTAATAAATAGTAGCT 22 V_ISL2_01_M01328 TRANSFAC + 368364 368379 5.0E-06 ATTTATTACTTAAGAC 16 V_ISL2_01_M01328 TRANSFAC + 368424 368439 8.0E-06 ACTTATTACTTAAGAC 16 V_ISL2_01_M01328 TRANSFAC + 368484 368499 8.0E-06 ACTTATTACTTAAGAC 16 V_ISL2_01_M01328 TRANSFAC - 373022 373037 9.0E-06 AATAATCCCTTAAGGA 16 V_GATA_C_M00203 TRANSFAC + 373686 373696 7.0E-06 TGATAAGGACA 11 V_HOXC6_01_M01406 TRANSFAC - 368360 368376 8.0E-06 TTAAGTAATAAATAGTA 17 V_NKX24_01_M01350 TRANSFAC + 372055 372070 1.0E-06 TGTGGCACTTGAAATT 16 V_AP4_Q6_01_M00927 TRANSFAC - 373008 373016 1.0E-05 AACAGCTGC 9 V_NKX62_Q2_M00489 TRANSFAC - 368361 368372 0.0E+00 GTAATAAATAGT 12 V_MEF2A_Q6_M02024 TRANSFAC + 372027 372036 9.0E-06 TATTTAAAGT 10 V_AP1_Q6_M00174 TRANSFAC + 372990 373000 7.0E-06 GATGACTAACT 11 V_OBOX5_02_M01480 TRANSFAC + 373025 373041 5.0E-06 TTAAGGGATTATTCACA 17 V_DBP_Q6_01_M01872 TRANSFAC + 376912 376919 5.0E-06 TTATGTAA 8 V_MYF_01_M01302 TRANSFAC - 373727 373738 8.0E-06 CAACAGCAGCAG 12 V_E4BP4_01_M00045 TRANSFAC + 376910 376921 4.0E-06 ACTTATGTAACT 12 V_RUNX1_01_M02257 TRANSFAC - 368436 368446 5.0E-06 TTCTGTGGTCT 11 V_RUNX1_01_M02257 TRANSFAC - 368496 368506 5.0E-06 TTCTGTGGTCT 11 V_NKX26_01_M01322 TRANSFAC + 372055 372070 5.0E-06 TGTGGCACTTGAAATT 16 V_IRX4_01_M01410 TRANSFAC + 372892 372908 8.0E-06 ACAGTACATGTAGTGGA 17 V_AP1_Q4_M00188 TRANSFAC + 372990 373000 7.0E-06 GATGACTAACT 11 V_CDX2_01_M01449 TRANSFAC - 368361 368376 3.0E-06 TTAAGTAATAAATAGT 16 V_MAZ_Q6_01_M02023 TRANSFAC - 372120 372133 1.0E-05 AGGGGAGGGGAGAA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 372125 372138 0.0E+00 AGGGGAGGGGAGGG 14 V_NKX22_02_M01372 TRANSFAC + 372055 372071 7.0E-06 TGTGGCACTTGAAATTC 17 V_MEF2_03_M00232 TRANSFAC - 372021 372042 3.0E-06 AACCACACTTTAAATAGCCAGC 22 V_ASCL2_03_M02737 TRANSFAC - 373003 373019 1.0E-06 AATAACAGCTGCCATTT 17 V_CDX1_01_M01373 TRANSFAC - 368361 368376 2.0E-06 TTAAGTAATAAATAGT 16 V_PIT1_01_M01465 TRANSFAC + 368363 368379 9.0E-06 TATTTATTACTTAAGAC 17 V_CRX_02_M01436 TRANSFAC + 373024 373039 7.0E-06 CTTAAGGGATTATTCA 16 V_GATA1_09_M02254 TRANSFAC + 373684 373694 1.0E-05 AGTGATAAGGA 11 V_TEF_01_M01305 TRANSFAC + 372088 372099 4.0E-06 CACATTCCACCC 12 V_MEF2_Q6_01_M00941 TRANSFAC + 372024 372035 4.0E-06 GGCTATTTAAAG 12 V_NCX_02_M01420 TRANSFAC - 368359 368375 4.0E-06 TAAGTAATAAATAGTAG 17 V_HNF4A_Q6_01_M02016 TRANSFAC + 370712 370726 6.0E-06 AAGCAAAGTTCATGT 15 V_AP1_01_M00517 TRANSFAC - 372989 373001 8.0E-06 CAGTTAGTCATCA 13 V_STAT3_03_M01595 TRANSFAC + 373665 373680 8.0E-06 GCTTCCAGGAAAGACT 16 V_IRX3_01_M01318 TRANSFAC + 372892 372908 4.0E-06 ACAGTACATGTAGTGGA 17 V_IRF7_01_M00453 TRANSFAC + 372063 372080 7.0E-06 TTGAAATTCTAAACTTGG 18 V_VBP_01_M00228 TRANSFAC - 376911 376920 3.0E-06 GTTACATAAG 10 V_GR_Q6_02_M01836 TRANSFAC - 368441 368453 1.0E-06 CAAACTGTTCTGT 13 V_GR_Q6_02_M01836 TRANSFAC - 368501 368513 1.0E-06 CAAACTGTTCTGT 13 V_IRX3_02_M01485 TRANSFAC + 372892 372908 8.0E-06 ACAGTACATGTAGTGGA 17 V_NKX25_03_M01414 TRANSFAC + 372055 372070 1.0E-06 TGTGGCACTTGAAATT 16 V_HOXB8_01_M01451 TRANSFAC - 368361 368376 3.0E-06 TTAAGTAATAAATAGT 16 V_HDX_01_M01333 TRANSFAC - 372160 372176 5.0E-06 ACTGCGAAATCACTCAT 17 V_TEF1_Q6_03_M01817 TRANSFAC - 372089 372097 6.0E-06 GTGGAATGT 9 V_OTX2_01_M01387 TRANSFAC + 373025 373041 2.0E-06 TTAAGGGATTATTCACA 17 V_IRX2_01_M01405 TRANSFAC + 372892 372908 5.0E-06 ACAGTACATGTAGTGGA 17 V_RARA_03_M02787 TRANSFAC + 370712 370727 7.0E-06 AAGCAAAGTTCATGTT 16 V_MYF6_03_M02781 TRANSFAC - 373005 373020 4.0E-06 GAATAACAGCTGCCAT 16 V_SATB1_01_M01232 TRANSFAC - 368366 368377 8.0E-06 CTTAAGTAATAA 12 V_SATB1_01_M01232 TRANSFAC - 368486 368497 8.0E-06 CTTAAGTAATAA 12 V_HOXD8_01_M01432 TRANSFAC - 368359 368375 1.0E-06 TAAGTAATAAATAGTAG 17 V_GSC_01_M01428 TRANSFAC - 373025 373041 8.0E-06 TGTGAATAATCCCTTAA 17 V_PITX2_01_M01447 TRANSFAC + 373025 373041 2.0E-06 TTAAGGGATTATTCACA 17 V_MEF2A_05_M01301 TRANSFAC + 372024 372035 3.0E-06 GGCTATTTAAAG 12 V_HOXA10_01_M01464 TRANSFAC - 368360 368375 0.0E+00 TAAGTAATAAATAGTA 16 V_OBOX5_01_M01381 TRANSFAC + 373025 373041 5.0E-06 TTAAGGGATTATTCACA 17 V_OBOX6_02_M03068 TRANSFAC + 373024 373038 5.0E-06 CTTAAGGGATTATTC 15 V_IRXB3_01_M01377 TRANSFAC + 372892 372908 9.0E-06 ACAGTACATGTAGTGGA 17 V_ATATA_B_M00311 TRANSFAC - 376910 376919 1.0E-05 TTACATAAGT 10 V_OTX1_01_M01366 TRANSFAC + 373025 373041 5.0E-06 TTAAGGGATTATTCACA 17 V_GLIS2_04_M02863 TRANSFAC + 368365 368378 1.0E-06 TTTATTACTTAAGA 14 V_GLIS2_04_M02863 TRANSFAC + 368425 368438 2.0E-06 CTTATTACTTAAGA 14 V_GLIS2_04_M02863 TRANSFAC + 368485 368498 2.0E-06 CTTATTACTTAAGA 14 V_STAT1_05_M01260 TRANSFAC + 373664 373685 6.0E-06 AGCTTCCAGGAAAGACTGTCAG 22 V_OBOX6_06_M03067 TRANSFAC - 373025 373041 5.0E-06 TGTGAATAATCCCTTAA 17 V_NKX21_01_M01312 TRANSFAC + 372055 372070 1.0E-06 TGTGGCACTTGAAATT 16 V_HOXC9_01_M01416 TRANSFAC - 368361 368376 2.0E-06 TTAAGTAATAAATAGT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.