Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 653486 secretoglobin, family 1C, member 1-like chr11 + 188079 - 193579 193079 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 192170 192188 0.0E+00 CAGCCACTAGGTGGCAGCA 19 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 188336 188353 6.0E-06 GACATTAAGCTGAAATTA 18 POU3F3_POU_DBD_monomeric_12_1 SELEX - 191522 191533 9.0E-06 TTTAATAATTTT 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 191518 191534 9.0E-06 ATAAAAAATTATTAAAA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 191525 191541 1.0E-05 ATTATTAAAACTAAACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 188178 188189 4.0E-06 GCTATAAATATA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 188178 188189 2.0E-06 GCTATAAATATA 12 Pax4_MA0068.1 JASPAR + 191511 191540 1.0E-06 AAAATATATAAAAAATTATTAAAACTAAAC 30 RUNX3_RUNX_full_monomeric_10_1 SELEX + 191630 191639 3.0E-06 AAACCACAAT 10 RUNX3_RUNX_full_monomeric_10_1 SELEX + 191654 191663 3.0E-06 AAACCACAAT 10 MEF2B_MADS_full_dimeric_12_1 SELEX + 188178 188189 6.0E-06 GCTATAAATATA 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 188338 188353 1.0E-05 TAATTTCAGCTTAATG 16 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 191630 191638 8.0E-06 AAACCACAA 9 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 191654 191662 8.0E-06 AAACCACAA 9 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX - 188324 188341 8.0E-06 AATGTCTTTTGTAGGGCA 18 Foxq1_MA0040.1 JASPAR - 191534 191544 1.0E-06 TATTGTTTAGT 11 MEF2A_MA0052.1 JASPAR - 188179 188188 5.0E-06 ATATTTATAG 10 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 191520 191534 5.0E-06 AAAAAATTATTAAAA 15 FOXI1_MA0042.1 JASPAR - 191533 191544 1.0E-05 TATTGTTTAGTT 12 CTCF_C2H2_full_monomeric_17_1 SELEX - 192171 192187 8.0E-06 GCTGCCACCTAGTGGCT 17 NFATC1_NFAT_full_dimeric_15_1 SELEX + 192033 192047 4.0E-06 TTTCCAGGATGGGAT 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 192033 192047 9.0E-06 ATCCCATCCTGGAAA 15 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 188336 188353 4.0E-06 GACATTAAGCTGAAATTA 18 VENTX_homeodomain_DBD_dimeric_21_1 SELEX + 188338 188358 1.0E-05 CATTAAGCTGAAATTAATTAA 21 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 192047 192055 9.0E-06 CACATAAAA 9 RUNX1_MA0002.2 JASPAR - 191630 191640 9.0E-06 CATTGTGGTTT 11 RUNX1_MA0002.2 JASPAR - 191654 191664 9.0E-06 CATTGTGGTTT 11 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 191520 191534 8.0E-06 AAAAAATTATTAAAA 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 191522 191533 8.0E-06 AAAATTATTAAA 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 188336 188353 6.0E-06 GACATTAAGCTGAAATTA 18 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 191512 191524 2.0E-06 AAATATATAAAAA 13 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 188775 188786 8.0E-06 TGACATAAAAAT 12 V_DMRT4_01_M01149 TRANSFAC + 192101 192113 4.0E-06 AATGTAACAAGGA 13 V_MINI20_B_M00324 TRANSFAC + 194590 194610 4.0E-06 CTCTGCCCCCACAGAGGGGCA 21 V_HNF3B_01_M00131 TRANSFAC - 191532 191546 7.0E-06 CTTATTGTTTAGTTT 15 V_MSX3_01_M01341 TRANSFAC + 188266 188281 0.0E+00 AAAAGCCAATTAAGAT 16 V_DBX1_01_M01483 TRANSFAC + 191512 191528 1.0E-06 AAATATATAAAAAATTA 17 V_DBX1_01_M01483 TRANSFAC - 191512 191528 4.0E-06 TAATTTTTTATATATTT 17 V_DBX1_01_M01483 TRANSFAC + 191515 191531 5.0E-06 TATATAAAAAATTATTA 17 V_DBX1_01_M01483 TRANSFAC - 191515 191531 3.0E-06 TAATAATTTTTTATATA 17 V_DBX1_01_M01483 TRANSFAC - 191516 191532 3.0E-06 TTAATAATTTTTTATAT 17 V_DBX1_01_M01483 TRANSFAC + 191519 191535 0.0E+00 TAAAAAATTATTAAAAC 17 V_DBX1_01_M01483 TRANSFAC + 191522 191538 1.0E-06 AAAATTATTAAAACTAA 17 V_FREAC7_01_M00293 TRANSFAC + 188176 188191 6.0E-06 TGGCTATAAATATAAC 16 V_CDX2_Q5_01_M01659 TRANSFAC + 188178 188188 8.0E-06 GCTATAAATAT 11 V_XFD1_01_M00267 TRANSFAC + 191615 191628 3.0E-06 CAAGTAAACACATT 14 V_FOXA2_04_M02749 TRANSFAC + 191530 191546 4.0E-06 TAAAACTAAACAATAAG 17 V_DMRT3_01_M01148 TRANSFAC + 191638 191652 8.0E-06 ATGTGGTTACAATTG 15 V_HNF1_02_M01379 TRANSFAC + 188715 188731 3.0E-06 GCTGACTTAACTAAATG 17 V_SOX30_03_M02804 TRANSFAC + 192202 192217 9.0E-06 TTTGAACAATGCAGCT 16 V_BCL6_01_M01183 TRANSFAC - 191511 191526 4.0E-06 ATTTTTTATATATTTT 16 V_BCL6_01_M01183 TRANSFAC - 191523 191538 2.0E-06 TTAGTTTTAATAATTT 16 V_AML3_Q6_M01856 TRANSFAC + 191631 191638 1.0E-05 AACCACAA 8 V_AML3_Q6_M01856 TRANSFAC + 191655 191662 1.0E-05 AACCACAA 8 V_MMEF2_Q6_M00405 TRANSFAC + 188177 188192 0.0E+00 GGCTATAAATATAACC 16 V_SATB1_Q3_M01723 TRANSFAC + 191708 191723 1.0E-05 TTTAAAAATGACAAAT 16 V_SOX5_01_M00042 TRANSFAC + 191536 191545 2.0E-06 TAAACAATAA 10 V_MEF2_02_M00231 TRANSFAC + 188172 188193 4.0E-06 CCTCTGGCTATAAATATAACCC 22 V_ISL2_01_M01328 TRANSFAC + 188266 188281 2.0E-06 AAAAGCCAATTAAGAT 16 V_SRY_02_M00160 TRANSFAC + 191535 191546 2.0E-06 CTAAACAATAAG 12 V_NFAT3_Q3_M01734 TRANSFAC - 191730 191739 6.0E-06 TGTTTTTCCT 10 V_AP4_Q6_M00176 TRANSFAC + 191671 191680 2.0E-06 CACAGCTGGT 10 V_GATA1_03_M00127 TRANSFAC - 191980 191993 0.0E+00 ATGAAGATTATAGT 14 V_SOX11_04_M02899 TRANSFAC + 191522 191535 3.0E-06 AAAATTATTAAAAC 14 V_AP2_Q6_01_M00915 TRANSFAC + 192019 192031 9.0E-06 CATCCCCCAGGCT 13 V_HNF3_Q6_01_M01012 TRANSFAC - 191529 191546 5.0E-06 CTTATTGTTTAGTTTTAA 18 V_FOXJ1_03_M02750 TRANSFAC + 191511 191526 9.0E-06 AAAATATATAAAAAAT 16 V_FOXJ1_03_M02750 TRANSFAC + 191615 191630 3.0E-06 CAAGTAAACACATTGA 16 V_AP4_Q6_02_M01860 TRANSFAC + 192577 192589 6.0E-06 ACAGCTGTGTCCA 13 V_HOXD13_01_M01404 TRANSFAC + 191523 191538 9.0E-06 AAATTATTAAAACTAA 16 V_SOX21_03_M02803 TRANSFAC + 191518 191533 5.0E-06 ATAAAAAATTATTAAA 16 V_SOX21_03_M02803 TRANSFAC - 191518 191533 2.0E-06 TTTAATAATTTTTTAT 16 V_PAX6_02_M01391 TRANSFAC - 191517 191532 5.0E-06 TTAATAATTTTTTATA 16 V_MEF2A_Q6_M02024 TRANSFAC - 188178 188187 2.0E-06 TATTTATAGC 10 V_MEF2A_Q6_M02024 TRANSFAC + 188310 188319 7.0E-06 TATTTTAACA 10 V_TRF1_01_M01237 TRANSFAC - 191866 191880 0.0E+00 TTAGGGTTAGGGTTA 15 V_TRF1_01_M01237 TRANSFAC - 191872 191886 0.0E+00 TTAGGGTTAGGGTTA 15 V_TRF1_01_M01237 TRANSFAC - 191878 191892 2.0E-06 TAGGGGTTAGGGTTA 15 V_TRF1_01_M01237 TRANSFAC - 191885 191899 6.0E-06 TTAGGGGTAGGGGTT 15 V_TRF1_01_M01237 TRANSFAC - 191995 192009 3.0E-06 CTAGGGATAGGGTGG 15 V_ELF4_04_M02850 TRANSFAC + 191515 191531 5.0E-06 TATATAAAAAATTATTA 17 V_COMP1_01_M00057 TRANSFAC + 191745 191768 2.0E-06 TCTTTTCATTGCCAGTGGAACACA 24 V_SOX7_03_M02807 TRANSFAC + 191531 191552 2.0E-06 AAAACTAAACAATAAGTTAAAC 22 V_MTERF_01_M01245 TRANSFAC + 192267 192280 2.0E-06 TGGTTTTGTTTGGT 14 V_HELIOSA_02_M01004 TRANSFAC + 191727 191737 6.0E-06 TGAAGGAAAAA 11 V_FOXA2_02_M02853 TRANSFAC + 191711 191725 7.0E-06 AAAAATGACAAATTG 15 V_DBX2_01_M01360 TRANSFAC + 191517 191532 4.0E-06 TATAAAAAATTATTAA 16 V_DBX2_01_M01360 TRANSFAC - 191519 191534 2.0E-06 TTTTAATAATTTTTTA 16 V_CEBPE_Q6_M01868 TRANSFAC + 189402 189415 1.0E-06 TAAGCTTTCTAAAT 14 V_CEBPE_Q6_M01868 TRANSFAC + 191691 191704 3.0E-06 TAGAATTGCTAAAC 14 V_ZFP105_03_M02827 TRANSFAC + 191534 191548 9.0E-06 ACTAAACAATAAGTT 15 V_RUNX1_01_M02257 TRANSFAC - 191630 191640 9.0E-06 CATTGTGGTTT 11 V_RUNX1_01_M02257 TRANSFAC - 191654 191664 9.0E-06 CATTGTGGTTT 11 V_HNF1_Q6_M00790 TRANSFAC - 191518 191535 4.0E-06 GTTTTAATAATTTTTTAT 18 V_NFAT_Q6_M00302 TRANSFAC - 188166 188177 1.0E-06 CAGAGGAAAAAA 12 V_NKX26_01_M01322 TRANSFAC + 188267 188282 4.0E-06 AAAGCCAATTAAGATC 16 V_ZBTB7B_04_M02930 TRANSFAC - 188760 188776 2.0E-06 CATGGGACCACCATCAT 17 V_NKX61_01_M00424 TRANSFAC - 188269 188281 3.0E-06 ATCTTAATTGGCT 13 V_XFD3_01_M00269 TRANSFAC + 191532 191545 9.0E-06 AAACTAAACAATAA 14 V_HES1_Q2_M01009 TRANSFAC + 192137 192151 3.0E-06 AACGCGTGTGGCCCA 15 V_AML2_01_M01759 TRANSFAC + 191631 191638 1.0E-05 AACCACAA 8 V_AML2_01_M01759 TRANSFAC + 191655 191662 1.0E-05 AACCACAA 8 V_RSRFC4_Q2_M00407 TRANSFAC + 188176 188192 7.0E-06 TGGCTATAAATATAACC 17 V_AMEF2_Q6_M00403 TRANSFAC + 188177 188194 8.0E-06 GGCTATAAATATAACCCG 18 V_HOXA3_07_M02869 TRANSFAC + 188332 188345 6.0E-06 AAAAGACATTAAGC 14 V_HNF3A_01_M01261 TRANSFAC + 191616 191625 3.0E-06 AAGTAAACAC 10 V_HNF1_Q6_01_M01011 TRANSFAC + 191517 191537 1.0E-06 TATAAAAAATTATTAAAACTA 21 V_MEF2_03_M00232 TRANSFAC + 188172 188193 1.0E-06 CCTCTGGCTATAAATATAACCC 22 V_SOX18_03_M02801 TRANSFAC - 192200 192215 7.0E-06 CTGCATTGTTCAAATC 16 V_OCT1_04_M00138 TRANSFAC + 191499 191521 5.0E-06 GAATTTGTCTTCAAAATATATAA 23 V_OCT1_04_M00138 TRANSFAC - 191509 191531 2.0E-06 TAATAATTTTTTATATATTTTGA 23 V_OCT1_04_M00138 TRANSFAC + 191510 191532 4.0E-06 CAAAATATATAAAAAATTATTAA 23 V_OCT1_04_M00138 TRANSFAC + 191520 191542 2.0E-06 AAAAAATTATTAAAACTAAACAA 23 V_OCT1_08_M01354 TRANSFAC - 191519 191534 2.0E-06 TTTTAATAATTTTTTA 16 V_PIT1_01_M01465 TRANSFAC - 191515 191531 9.0E-06 TAATAATTTTTTATATA 17 V_AP4_Q5_M00175 TRANSFAC + 191671 191680 6.0E-06 CACAGCTGGT 10 V_SOX12_04_M02900 TRANSFAC + 191512 191527 4.0E-06 AAATATATAAAAAATT 16 V_MEF2_04_M00233 TRANSFAC + 188172 188193 6.0E-06 CCTCTGGCTATAAATATAACCC 22 V_BBX_04_M02843 TRANSFAC - 188307 188323 7.0E-06 CAACTGTTAAAATACAG 17 V_BBX_04_M02843 TRANSFAC + 188308 188324 8.0E-06 TGTATTTTAACAGTTGT 17 V_OCAB_Q6_M02113 TRANSFAC + 188280 188290 7.0E-06 ATCTGCAAACC 11 V_HFH1_01_M00129 TRANSFAC - 191533 191544 0.0E+00 TATTGTTTAGTT 12 V_MEF2_Q6_01_M00941 TRANSFAC - 188181 188192 1.0E-06 GGTTATATTTAT 12 V_MEF2_Q6_01_M00941 TRANSFAC - 191709 191720 8.0E-06 TGTCATTTTTAA 12 V_NCX_02_M01420 TRANSFAC + 191512 191528 7.0E-06 AAATATATAAAAAATTA 17 V_NCX_02_M01420 TRANSFAC - 191512 191528 3.0E-06 TAATTTTTTATATATTT 17 V_NCX_02_M01420 TRANSFAC + 191519 191535 1.0E-06 TAAAAAATTATTAAAAC 17 V_NCX_02_M01420 TRANSFAC + 191522 191538 6.0E-06 AAAATTATTAAAACTAA 17 V_HB24_01_M01399 TRANSFAC - 191517 191531 8.0E-06 TAATAATTTTTTATA 15 V_TBP_06_M02814 TRANSFAC + 191509 191524 0.0E+00 TCAAAATATATAAAAA 16 V_TBP_06_M02814 TRANSFAC - 191509 191524 0.0E+00 TTTTTATATATTTTGA 16 V_TBP_06_M02814 TRANSFAC + 191511 191526 1.0E-06 AAAATATATAAAAAAT 16 V_TBP_06_M02814 TRANSFAC - 191511 191526 0.0E+00 ATTTTTTATATATTTT 16 V_TBP_06_M02814 TRANSFAC + 191513 191528 1.0E-06 AATATATAAAAAATTA 16 V_TBP_06_M02814 TRANSFAC - 191513 191528 3.0E-06 TAATTTTTTATATATT 16 V_CTCF_02_M01259 TRANSFAC + 192167 192186 0.0E+00 CATCAGCCACTAGGTGGCAG 20 V_CTCF_01_M01200 TRANSFAC + 192169 192188 0.0E+00 TCAGCCACTAGGTGGCAGCA 20 V_SOX9_B1_M00410 TRANSFAC + 191534 191547 9.0E-06 ACTAAACAATAAGT 14 V_FOXO1_Q5_M01216 TRANSFAC + 191733 191741 8.0E-06 AAAAACAAG 9 V_HFH8_01_M00294 TRANSFAC - 191615 191627 9.0E-06 ATGTGTTTACTTG 13 V_S8_01_M00099 TRANSFAC + 188266 188281 5.0E-06 AAAAGCCAATTAAGAT 16 V_MINI19_B_M00323 TRANSFAC + 194590 194610 4.0E-06 CTCTGCCCCCACAGAGGGGCA 21 V_SOX15_03_M02799 TRANSFAC + 191533 191549 1.0E-06 AACTAAACAATAAGTTA 17 V_MTF1_06_M02882 TRANSFAC + 191512 191525 2.0E-06 AAATATATAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 191514 191527 5.0E-06 ATATATAAAAAATT 14 V_MTF1_06_M02882 TRANSFAC + 191524 191537 6.0E-06 AATTATTAAAACTA 14 V_TBP_01_M00471 TRANSFAC + 188180 188187 4.0E-06 TATAAATA 8 V_AP3_Q6_M00690 TRANSFAC + 189409 189416 5.0E-06 TCTAAATT 8 V_NKX25_03_M01414 TRANSFAC + 188267 188282 7.0E-06 AAAGCCAATTAAGATC 16 V_BARHL1_01_M01332 TRANSFAC + 188266 188281 0.0E+00 AAAAGCCAATTAAGAT 16 V_FOXL1_02_M02857 TRANSFAC + 191526 191541 2.0E-06 TTATTAAAACTAAACA 16 V_FOXL1_02_M02857 TRANSFAC + 191531 191546 2.0E-06 AAAACTAAACAATAAG 16 V_OCT1_Q6_M00195 TRANSFAC - 188745 188759 1.0E-05 ATGTATGCAATGCAC 15 V_TCF7_04_M02921 TRANSFAC + 191524 191538 7.0E-06 AATTATTAAAACTAA 15 V_TCF1_06_M02815 TRANSFAC + 188715 188731 3.0E-06 GCTGACTTAACTAAATG 17 V_DMRT7_01_M01151 TRANSFAC + 188296 188309 7.0E-06 TTGTTGTAATTCTG 14 V_DMRT7_01_M01151 TRANSFAC - 191622 191635 5.0E-06 TGGTTTCAATGTGT 14 V_BDP1_01_M01796 TRANSFAC + 192199 192210 9.0E-06 GGATTTGAACAA 12 V_FOXO3_01_M00477 TRANSFAC - 191532 191545 4.0E-06 TTATTGTTTAGTTT 14 V_ASCL2_04_M02841 TRANSFAC + 191989 192004 2.0E-06 TTCATCCCACCCTATC 16 V_FOX_Q2_M00809 TRANSFAC - 191511 191523 3.0E-06 TTTTATATATTTT 13 V_RSRFC4_01_M00026 TRANSFAC - 188176 188191 9.0E-06 GTTATATTTATAGCCA 16 V_PLZF_02_M01075 TRANSFAC + 191507 191535 9.0E-06 CTTCAAAATATATAAAAAATTATTAAAAC 29 V_OCT1_06_M00162 TRANSFAC + 188725 188738 3.0E-06 CTAAATGTGATTTT 14 V_SOX21_04_M02907 TRANSFAC - 191532 191548 6.0E-06 AACTTATTGTTTAGTTT 17 V_TBX22_01_M01195 TRANSFAC - 191609 191627 7.0E-06 ATGTGTTTACTTGCCATCT 19 V_SOX8_03_M02808 TRANSFAC - 191533 191549 3.0E-06 TAACTTATTGTTTAGTT 17 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 191630 191637 1.0E-05 TGTGGTTT 8 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 191654 191661 1.0E-05 TGTGGTTT 8 V_SATB1_01_M01232 TRANSFAC - 192057 192068 5.0E-06 TATTCGAAACAA 12 V_HOXD8_01_M01432 TRANSFAC + 191519 191535 3.0E-06 TAAAAAATTATTAAAAC 17 V_BARHL2_01_M01446 TRANSFAC + 188266 188281 0.0E+00 AAAAGCCAATTAAGAT 16 V_SOX12_03_M02796 TRANSFAC + 188293 188306 7.0E-06 CATTTGTTGTAATT 14 V_SOX12_03_M02796 TRANSFAC - 191532 191545 9.0E-06 TTATTGTTTAGTTT 14 V_PIT1_Q6_M00802 TRANSFAC - 191680 191697 7.0E-06 AATTCTAACAGATATAGA 18 V_SRY_05_M02917 TRANSFAC + 191532 191548 1.0E-06 AAACTAAACAATAAGTT 17 V_MEF2_01_M00006 TRANSFAC + 188179 188194 5.0E-06 CTATAAATATAACCCG 16 V_MEF2A_05_M01301 TRANSFAC + 188177 188188 9.0E-06 GGCTATAAATAT 12 V_MEF2A_05_M01301 TRANSFAC - 188181 188192 1.0E-06 GGTTATATTTAT 12 V_LHX4_01_M01421 TRANSFAC - 188266 188282 3.0E-06 GATCTTAATTGGCTTTT 17 V_SOX5_07_M02909 TRANSFAC + 191519 191535 3.0E-06 TAAAAAATTATTAAAAC 17 V_ZFP128_04_M02932 TRANSFAC + 188178 188191 3.0E-06 GCTATAAATATAAC 14 V_ZFP128_04_M02932 TRANSFAC - 188178 188191 1.0E-06 GTTATATTTATAGC 14 V_HOXD10_01_M01375 TRANSFAC + 191523 191539 4.0E-06 AAATTATTAAAACTAAA 17 V_TCF11MAFG_01_M00284 TRANSFAC + 191657 191678 2.0E-06 CCACAATGAGATAGCACAGCTG 22 V_GLIS2_04_M02863 TRANSFAC + 191522 191535 4.0E-06 AAAATTATTAAAAC 14 V_ARID5A_04_M02840 TRANSFAC - 188302 188318 3.0E-06 GTTAAAATACAGAATTA 17 V_FOXK1_03_M02752 TRANSFAC + 191530 191546 4.0E-06 TAAAACTAAACAATAAG 17 V_SOX14_03_M02798 TRANSFAC + 192306 192321 1.0E-05 GTCCATTGTAATATGT 16 V_CEBPA_Q6_M01866 TRANSFAC - 191694 191706 2.0E-06 GAGTTTAGCAATT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.