Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LMF1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 64788 lipase maturation factor 1 chr16 - 1020484 - 1025984 1020984 Transcription Factor Binding Sites   Download all TFBS in the LMF1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR - 1021147 1021157 4.0E-06 CGCGTGGGCGG 11 HINFP1_C2H2_full_dimeric_19_1 SELEX + 1020758 1020776 7.0E-06 GCGGATGTCCCGGGCCCGC 19 MESP1_bHLH_DBD_dimeric_10_1 SELEX - 1025066 1025075 4.0E-06 AACACCTGCT 10 MYF6_bHLH_full_dimeric_10_1 SELEX + 1024947 1024956 7.0E-06 AACATCTGTT 10 MYF6_bHLH_full_dimeric_10_1 SELEX - 1024947 1024956 8.0E-06 AACAGATGTT 10 NHLH1_MA0048.1 JASPAR + 1024698 1024709 8.0E-06 CAGCAGCTGCGG 12 NHLH1_MA0048.1 JASPAR - 1024698 1024709 6.0E-06 CCGCAGCTGCTG 12 YY1_C2H2_full_monomeric_11_1 SELEX + 1020952 1020962 6.0E-06 GCCGCCATTGT 11 EGR1_C2H2_full_monomeric_14_1 SELEX + 1021146 1021159 8.0E-06 CCCGCCCACGCGCG 14 Pax4_MA0068.1 JASPAR - 1025301 1025330 1.0E-06 AAAAAAAATTACACATTCGTTTCCTAACAT 30 Klf4_MA0039.2 JASPAR - 1021083 1021092 5.0E-06 TGGGTGGGGC 10 TCF7L1_HMG_full_monomeric_12_1 SELEX + 1018794 1018805 3.0E-06 GGAGATCAAAGG 12 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 1022372 1022383 6.0E-06 AGCCCTCAGGCA 12 LEF1_HMG_DBD_monomeric_15_1 SELEX + 1018794 1018808 2.0E-06 GGAGATCAAAGGAGC 15 TCF4_bHLH_full_dimeric_10_1 SELEX - 1025066 1025075 7.0E-06 AACACCTGCT 10 ZNF740_C2H2_full_monomeric_10_1 SELEX + 1025016 1025025 5.0E-06 ACCCCCCCAC 10 EGR2_C2H2_full_monomeric_15_1 SELEX + 1021145 1021159 7.0E-06 CCCCGCCCACGCGCG 15 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 1024945 1024958 5.0E-06 CTAACATCTGTTGC 14 RFX3_RFX_DBD_dimeric_15_1 SELEX + 1018951 1018965 7.0E-06 GTTTGCTAAGTGACA 15 SP4_C2H2_full_monomeric_17_1 SELEX + 1021003 1021019 1.0E-06 GAGGCCCCGCCCATTCT 17 SP4_C2H2_full_monomeric_17_1 SELEX + 1021022 1021038 1.0E-06 GAGGCCCCGCCCATTCT 17 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 1018794 1018805 1.0E-06 GGAGATCAAAGG 12 SP1_C2H2_DBD_monomeric_11_1 SELEX + 1021144 1021154 1.0E-05 GCCCCGCCCAC 11 JDP2_bZIP_full_dimeric_9_1 SELEX + 1025103 1025111 7.0E-06 ATGACTCAC 9 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 1022372 1022383 8.0E-06 AGCCCTCAGGCA 12 Zfp740_C2H2_DBD_monomeric_10_1 SELEX + 1025016 1025025 2.0E-06 ACCCCCCCAC 10 EGR2_C2H2_DBD_monomeric_11_1 SELEX + 1021147 1021157 6.0E-06 CCGCCCACGCG 11 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 1022372 1022383 6.0E-06 AGCCCTCAGGCA 12 NHLH1_bHLH_full_dimeric_10_1 SELEX + 1024699 1024708 5.0E-06 AGCAGCTGCG 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 1024699 1024708 4.0E-06 CGCAGCTGCT 10 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 1022372 1022383 8.0E-06 AGCCCTCAGGCA 12 RREB1_MA0073.1 JASPAR + 1025015 1025034 2.0E-06 AACCCCCCCACCCCCCACGT 20 TCF3_bHLH_DBD_dimeric_10_1 SELEX - 1025066 1025075 2.0E-06 AACACCTGCT 10 RXR_RAR_DR5_MA0159.1 JASPAR - 1025138 1025154 7.0E-06 GGTGCAGGGAGAGGACA 17 V_LEF1_04_M02774 TRANSFAC - 1018793 1018809 3.0E-06 GGCTCCTTTGATCTCCG 17 V_BACH2_01_M00490 TRANSFAC - 1025102 1025112 4.0E-06 TGTGAGTCATC 11 TAL1_TCF3_MA0091.1 JASPAR + 1024945 1024956 2.0E-06 CTAACATCTGTT 12 V_ETS_B_M00340 TRANSFAC - 1018871 1018884 1.0E-05 AGCAGGAAGTCCCA 14 V_ZFP740_03_M02834 TRANSFAC + 1025020 1025035 6.0E-06 CCCCACCCCCCACGTG 16 V_SPZ1_01_M00446 TRANSFAC + 1021621 1021635 4.0E-06 TCAGGAGGGAAGGGC 15 V_EGR1_02_M01972 TRANSFAC - 1021147 1021157 6.0E-06 CGCGTGGGCGG 11 V_NERF_Q2_M00531 TRANSFAC + 1020660 1020677 2.0E-06 CAGCAGGAAGGAGGGCTG 18 V_SP1_02_M01303 TRANSFAC - 1025018 1025028 5.0E-06 GGGGTGGGGGG 11 V_MEF2A_Q6_M02024 TRANSFAC - 1018726 1018735 2.0E-06 TATTTTAAGC 10 V_NRSE_B_M00325 TRANSFAC - 1024688 1024708 8.0E-06 CGCAGCTGCTGGGAGCGTGGC 21 V_PPARGRXRA_01_M02262 TRANSFAC - 1021516 1021530 5.0E-06 CTGGGAGAAAGGGGA 15 V_AP1_Q6_M00174 TRANSFAC + 1025102 1025112 1.0E-05 GATGACTCACA 11 V_HMGA2_01_M01300 TRANSFAC + 1024881 1024895 9.0E-06 ATTTACCCCAATTTT 15 V_BACH1_01_M00495 TRANSFAC - 1025100 1025114 6.0E-06 TCTGTGAGTCATCGT 15 V_GC_01_M00255 TRANSFAC - 1021004 1021017 1.0E-06 AATGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC - 1021023 1021036 1.0E-06 AATGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC - 1021042 1021055 9.0E-06 GAGAGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC - 1021123 1021136 9.0E-06 AGGGGGCGGTGCCT 14 V_PR_Q2_M00960 TRANSFAC - 1022856 1022865 7.0E-06 GAGAGAACAG 10 V_PR_01_M00954 TRANSFAC + 1022842 1022868 9.0E-06 TCTGCTGGGAGCTCCTGTTCTCTCTGA 27 V_TCFAP2C_03_M02821 TRANSFAC - 1022876 1022890 2.0E-06 AGACCCTGAGGGAAA 15 V_SP4_03_M02810 TRANSFAC + 1021124 1021140 5.0E-06 GGCACCGCCCCCTCCAG 17 V_KROX_Q6_M00982 TRANSFAC + 1021085 1021098 6.0E-06 CCCACCCACACCCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 1021322 1021331 4.0E-06 CCCTCCCCCA 10 V_OLF1_01_M00261 TRANSFAC - 1020437 1020458 7.0E-06 AGGAGTTCCCAGGAGAGCTGGG 22 V_SP1_Q6_M00196 TRANSFAC - 1021005 1021017 5.0E-06 AATGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 1021024 1021036 5.0E-06 AATGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 1021143 1021155 8.0E-06 CGTGGGCGGGGCC 13 V_AP2BETA_Q3_M01858 TRANSFAC + 1022367 1022382 5.0E-06 GTGTGTGCCTGAGGGC 16 V_EGR1_Q6_M01873 TRANSFAC - 1021147 1021156 7.0E-06 GCGTGGGCGG 10 V_PAX5_01_M00143 TRANSFAC + 1022554 1022581 7.0E-06 CCTGGGACCACGCCTGCAGAGCGGGCCC 28 V_ASCL2_03_M02737 TRANSFAC - 1025062 1025078 8.0E-06 CACAACACCTGCTCTCT 17 V_JUNDM2_04_M02876 TRANSFAC + 1025099 1025114 4.0E-06 GACGATGACTCACAGA 16 V_SP1SP3_Q4_M01219 TRANSFAC + 1021128 1021138 1.0E-06 CCGCCCCCTCC 11 V_TAL1BETAE47_01_M00065 TRANSFAC - 1024944 1024959 1.0E-06 GGCAACAGATGTTAGC 16 V_ERBETA_Q5_M01875 TRANSFAC - 1020822 1020836 6.0E-06 TTCTGGCTGACCCGG 15 V_ZIC3_05_M02941 TRANSFAC - 1024989 1025003 2.0E-06 AGTCACAGCAGGATC 15 V_RREB1_01_M00257 TRANSFAC + 1021084 1021097 6.0E-06 CCCCACCCACACCC 14 V_HIC1_02_M01072 TRANSFAC + 1021162 1021176 6.0E-06 AGCGGGTGCCCGGAG 15 V_IK3_01_M00088 TRANSFAC + 1020445 1020457 5.0E-06 TCCTGGGAACTCC 13 V_TAL1BETAITF2_01_M00070 TRANSFAC - 1024944 1024959 1.0E-06 GGCAACAGATGTTAGC 16 V_NEUROD_02_M01288 TRANSFAC + 1024748 1024759 9.0E-06 GTCCAGCTGTCC 12 V_SP4_Q5_M01273 TRANSFAC + 1021144 1021154 9.0E-06 GCCCCGCCCAC 11 V_AP1_Q4_01_M00926 TRANSFAC - 1025103 1025110 1.0E-05 TGAGTCAT 8 V_MYOD_01_M00001 TRANSFAC + 1025065 1025076 5.0E-06 GAGCAGGTGTTG 12 V_LEF1_Q2_01_M01022 TRANSFAC + 1018797 1018806 6.0E-06 GATCAAAGGA 10 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 1024944 1024959 1.0E-06 GGCAACAGATGTTAGC 16 V_CBF_01_M01079 TRANSFAC - 1018731 1018746 6.0E-06 GGTCAAGCGGATATTT 16 V_FRA1_Q5_M01267 TRANSFAC - 1025103 1025110 1.0E-05 TGAGTCAT 8 V_E47_01_M00002 TRANSFAC + 1025064 1025078 8.0E-06 AGAGCAGGTGTTGTG 15 V_ZFP281_01_M01597 TRANSFAC - 1025020 1025030 4.0E-06 GGGGGGTGGGG 11 V_R_01_M00273 TRANSFAC + 1024801 1024821 7.0E-06 TTGTCCCTGGCATGCGGTGGC 21 V_LEF1TCF1_Q4_M00978 TRANSFAC - 1018795 1018805 2.0E-06 CCTTTGATCTC 11 V_RXR_RAR_01_M02272 TRANSFAC - 1025138 1025154 7.0E-06 GGTGCAGGGAGAGGACA 17 V_TCFAP2A_03_M02819 TRANSFAC - 1022876 1022890 1.0E-06 AGACCCTGAGGGAAA 15 V_ZFP281_04_M02831 TRANSFAC + 1025018 1025032 8.0E-06 CCCCCCACCCCCCAC 15 V_HOMEZ_01_M01429 TRANSFAC + 1018943 1018959 2.0E-06 ACTTCATCGTTTGCTAA 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 1021083 1021096 3.0E-06 GGTGTGGGTGGGGC 14 V_TCFAP2E_03_M02822 TRANSFAC - 1022876 1022890 8.0E-06 AGACCCTGAGGGAAA 15 V_SP1_Q4_01_M00932 TRANSFAC - 1021143 1021155 4.0E-06 CGTGGGCGGGGCC 13 V_DEC_Q1_M00997 TRANSFAC + 1025027 1025039 9.0E-06 CCCCACGTGAGGC 13 V_NR2F2_04_M02887 TRANSFAC + 1020818 1020833 3.0E-06 CGATCCGGGTCAGCCA 16 PPARG_RXRA_MA0065.2 JASPAR - 1021516 1021530 5.0E-06 CTGGGAGAAAGGGGA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.