Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SHMT1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6470 serine hydroxymethyltransferase 1 (soluble) chr17 - 18266356 - 18271856 18266856 Transcription Factor Binding Sites   Download all TFBS in the SHMT1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SRY_HMG_DBD_dimeric_15_1 SELEX - 18265938 18265952 7.0E-06 AGAAATAACATTGTA 15 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 18266866 18266876 1.0E-05 GCCCCGCCCCC 11 SOX21_HMG_DBD_dimeric_13_2 SELEX + 18267137 18267149 1.0E-06 TGAATTTTGTTCA 13 SOX9_HMG_full_dimeric_17_3 SELEX + 18267135 18267151 5.0E-06 AGTGAATTTTGTTCATG 17 SOX7_HMG_full_dimeric_17_2 SELEX + 18267135 18267151 1.0E-06 AGTGAATTTTGTTCATG 17 STAT1_MA0137.2 JASPAR + 18267070 18267084 1.0E-06 GATTTCCAGGAAGAC 15 STAT1_MA0137.2 JASPAR - 18267070 18267084 1.0E-06 GTCTTCCTGGAAATC 15 SOX15_HMG_full_dimeric_15_3 SELEX - 18267136 18267150 4.0E-06 ATGAACAAAATTCAC 15 Sox17_HMG_DBD_dimeric_15_2 SELEX + 18267136 18267150 8.0E-06 GTGAATTTTGTTCAT 15 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX + 18265964 18265980 7.0E-06 AACTGGTGTTTCCAGTC 17 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 18265964 18265980 9.0E-06 GACTGGAAACACCAGTT 17 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 18266154 18266165 4.0E-06 ATTCCCCACAGG 12 SP1_MA0079.2 JASPAR + 18266867 18266876 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 18266863 18266879 5.0E-06 TTGGCCCCGCCCCCGGA 17 SOX15_HMG_full_dimeric_15_1 SELEX - 18265938 18265952 8.0E-06 AGAAATAACATTGTA 15 SOX14_HMG_DBD_dimeric_15_1 SELEX + 18267136 18267150 9.0E-06 GTGAATTTTGTTCAT 15 Stat3_MA0144.1 JASPAR - 18267072 18267081 4.0E-06 TTCCTGGAAA 10 Stat3_MA0144.1 JASPAR + 18267073 18267082 1.0E-06 TTCCAGGAAG 10 CREB3L1_bZIP_full_dimeric_14_1 SELEX + 18266769 18266782 8.0E-06 CAGCCACGTGACCA 14 Sox3_HMG_DBD_dimeric_17_3 SELEX + 18267135 18267151 1.0E-06 AGTGAATTTTGTTCATG 17 ZNF410_C2H2_DBD_monomeric_17_1 SELEX + 18266460 18266476 9.0E-06 GCCACCCCATCATACCG 17 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 18266018 18266035 2.0E-06 TGTGCTGACCTCAGCTGG 18 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 18266018 18266035 5.0E-06 CCAGCTGAGGTCAGCACA 18 ZNF524_C2H2_full_monomeric_14_1 SELEX + 18266638 18266651 1.0E-05 CTCGGACCCGAAGC 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 18266154 18266165 4.0E-06 ATTCCCCACAGG 12 Sox3_HMG_DBD_dimeric_17_1 SELEX - 18265937 18265953 7.0E-06 CAGAAATAACATTGTAG 17 V_STAT5A_Q6_M01890 TRANSFAC + 18267069 18267081 1.0E-06 AGATTTCCAGGAA 13 V_USF_Q6_M00187 TRANSFAC - 18266771 18266780 2.0E-06 GTCACGTGGC 10 V_MAX_Q6_M01830 TRANSFAC + 18266768 18266779 1.0E-06 CCAGCCACGTGA 12 V_EBOX_Q6_01_M01034 TRANSFAC + 18266772 18266781 2.0E-06 CCACGTGACC 10 V_MAFB_03_M02879 TRANSFAC - 18265945 18265959 5.0E-06 TTCTTGCAGAAATAA 15 V_FOXJ2_02_M00423 TRANSFAC - 18265938 18265951 1.0E-05 GAAATAACATTGTA 14 V_SP1_Q6_01_M00931 TRANSFAC - 18266866 18266875 4.0E-06 GGGGCGGGGC 10 V_GTF2IRD1_01_M01229 TRANSFAC + 18267126 18267134 3.0E-06 GGGATTATG 9 V_AP4_Q6_M00176 TRANSFAC + 18266027 18266036 5.0E-06 CTCAGCTGGA 10 V_STAT5B_01_M00459 TRANSFAC + 18267070 18267084 4.0E-06 GATTTCCAGGAAGAC 15 V_STAT5B_01_M00459 TRANSFAC - 18267070 18267084 7.0E-06 GTCTTCCTGGAAATC 15 V_SP1_03_M02281 TRANSFAC + 18266867 18266876 7.0E-06 CCCCGCCCCC 10 V_PPARGRXRA_01_M02262 TRANSFAC + 18266032 18266046 8.0E-06 CTGGACCAAGGGTCA 15 V_SP1_Q6_M00196 TRANSFAC - 18266865 18266877 1.0E-06 CGGGGGCGGGGCC 13 V_BCL6_Q3_M01171 TRANSFAC - 18266110 18266119 8.0E-06 TGTTCTAGGA 10 V_ZBRK1_01_M01105 TRANSFAC + 18266215 18266229 3.0E-06 GGGGCGCAGGCTTTG 15 V_HNF4A_Q6_01_M02016 TRANSFAC + 18266035 18266049 6.0E-06 GACCAAGGGTCACTT 15 V_STAT3_03_M01595 TRANSFAC + 18267071 18267086 1.0E-06 ATTTCCAGGAAGACTA 16 V_SP4_Q5_M01273 TRANSFAC + 18266866 18266876 1.0E-06 GCCCCGCCCCC 11 V_USF_Q6_01_M00796 TRANSFAC + 18266770 18266781 2.0E-06 AGCCACGTGACC 12 V_NFYC_Q5_M02107 TRANSFAC + 18266882 18266895 3.0E-06 CGCCCAATCAGAGA 14 V_STAT1STAT1_Q3_M01212 TRANSFAC + 18267071 18267083 0.0E+00 ATTTCCAGGAAGA 13 V_T3RBETA_Q6_01_M02119 TRANSFAC - 18266022 18266038 6.0E-06 GGTCCAGCTGAGGTCAG 17 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 18266018 18266032 8.0E-06 GCTGAGGTCAGCACA 15 V_STAT5A_01_M00457 TRANSFAC - 18267070 18267084 7.0E-06 GTCTTCCTGGAAATC 15 V_SP1_Q2_01_M00933 TRANSFAC + 18266867 18266876 4.0E-06 CCCCGCCCCC 10 V_ARP1_01_M00155 TRANSFAC - 18266177 18266192 9.0E-06 TCCACTTTTGGCCCGT 16 V_NFYA_Q5_M02106 TRANSFAC + 18266882 18266895 8.0E-06 CGCCCAATCAGAGA 14 V_SP1_Q4_01_M00932 TRANSFAC - 18266865 18266877 1.0E-06 CGGGGGCGGGGCC 13 V_STAT1_05_M01260 TRANSFAC - 18267063 18267084 5.0E-06 GTCTTCCTGGAAATCTTGGTCC 22 V_STAT1_05_M01260 TRANSFAC + 18267070 18267091 4.0E-06 GATTTCCAGGAAGACTACACAG 22 PPARG_RXRA_MA0065.2 JASPAR + 18266032 18266046 8.0E-06 CTGGACCAAGGGTCA 15 V_NF1_Q6_M00193 TRANSFAC - 18266432 18266449 1.0E-05 CTTTGGCAAGAATGCGAA 18 V_T3RALPHA_Q6_M01724 TRANSFAC - 18266022 18266032 3.0E-06 GCTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.