Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 646862 uncharacterized LOC646862 chr19 + 58902456 - 58907956 58907456 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 58912351 58912369 9.0E-06 TGATCACAAGAGGGTGCCG 19 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 58906905 58906915 1.0E-05 GCCCCGCCCCC 11 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 58906276 58906287 6.0E-06 GTATTGCTGACT 12 GATA5_GATA_DBD_monomeric_8_1 SELEX - 58910867 58910874 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX - 58910867 58910874 7.0E-06 AGATAAGA 8 SP1_MA0079.2 JASPAR - 58906905 58906914 7.0E-06 CCCCGCCCCC 10 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 58906276 58906296 2.0E-06 GTATTGCTGACTCAGAACCAT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 58906276 58906296 5.0E-06 ATGGTTCTGAGTCAGCAATAC 21 GATA3_GATA_full_monomeric_8_1 SELEX - 58910867 58910874 7.0E-06 AGATAAGA 8 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 58906393 58906407 5.0E-06 TGCCACGCCCTCAGA 15 MAFG_bZIP_full_dimeric_21_1 SELEX + 58906276 58906296 3.0E-06 GTATTGCTGACTCAGAACCAT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 58906276 58906296 2.0E-06 ATGGTTCTGAGTCAGCAATAC 21 MAFK_bZIP_full_monomeric_12_1 SELEX + 58906275 58906286 2.0E-06 AGTATTGCTGAC 12 V_MEQ_01_M02049 TRANSFAC + 58910857 58910865 7.0E-06 AACACACAC 9 V_AP1_Q2_M00173 TRANSFAC + 58906281 58906291 3.0E-06 GCTGACTCAGA 11 V_APOLYA_B_M00310 TRANSFAC + 58912025 58912039 2.0E-06 AATAAATTCTCTTTT 15 V_MAFK_03_M02776 TRANSFAC + 58906274 58906288 2.0E-06 AAGTATTGCTGACTC 15 V_MAFB_05_M02775 TRANSFAC + 58906275 58906291 0.0E+00 AGTATTGCTGACTCAGA 17 V_SP1_Q6_01_M00931 TRANSFAC + 58906906 58906915 4.0E-06 GGGGCGGGGC 10 V_IRF_Q6_01_M00972 TRANSFAC - 58911832 58911842 1.0E-05 AGAAGAGAAAG 11 V_NFAT3_Q3_M01734 TRANSFAC + 58912034 58912043 6.0E-06 TCTTTTTCCT 10 V_SP1_03_M02281 TRANSFAC - 58906905 58906914 7.0E-06 CCCCGCCCCC 10 V_AP4_Q6_02_M01860 TRANSFAC + 58907003 58907015 1.0E-06 CCAGCTGCTGGCA 13 V_PU1_Q4_M01172 TRANSFAC + 58908108 58908126 1.0E-06 TACATCTTCTTCCTCATCC 19 V_WT1_Q6_01_M02036 TRANSFAC + 58907977 58907986 4.0E-06 CGCCCCCGCC 10 V_SOX13_03_M02797 TRANSFAC + 58912017 58912032 9.0E-06 TCGACGACAATAAATT 16 V_GC_01_M00255 TRANSFAC + 58906904 58906917 6.0E-06 AGGGGGCGGGGCAG 14 V_HELIOSA_02_M01004 TRANSFAC - 58912036 58912046 6.0E-06 TGAAGGAAAAA 11 V_POLY_C_M00212 TRANSFAC + 58912024 58912041 6.0E-06 CAATAAATTCTCTTTTTC 18 V_KROX_Q6_M00982 TRANSFAC + 58907975 58907988 2.0E-06 GCCGCCCCCGCCGC 14 V_SP1_Q6_M00196 TRANSFAC + 58906904 58906916 4.0E-06 AGGGGGCGGGGCA 13 V_CDX2_01_M01449 TRANSFAC + 58912019 58912034 5.0E-06 GACGACAATAAATTCT 16 V_MAZ_Q6_01_M02023 TRANSFAC - 58907433 58907446 2.0E-06 CTGGGAGGAGAGGA 14 V_EGR1_Q6_M01873 TRANSFAC - 58907976 58907985 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC + 58911828 58911842 4.0E-06 TCCTCTTTCTCTTCT 15 V_SOX_Q6_M01014 TRANSFAC - 58911759 58911771 1.0E-06 CTCTTTGTTTGAA 13 V_ZBRK1_01_M01105 TRANSFAC - 58911733 58911747 8.0E-06 GGCAGGCAGACATTG 15 V_KLF7_03_M02773 TRANSFAC - 58906394 58906409 9.0E-06 TGTGCCACGCCCTCAG 16 V_MAFK_Q3_M02022 TRANSFAC - 58906279 58906289 4.0E-06 TGAGTCAGCAA 11 V_SP1_01_M00008 TRANSFAC - 58911900 58911909 7.0E-06 GGGGCAGGGT 10 V_TFIII_Q6_M00706 TRANSFAC + 58907048 58907056 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC - 58906905 58906915 1.0E-06 GCCCCGCCCCC 11 V_AP1FJ_Q2_M00172 TRANSFAC + 58906281 58906291 7.0E-06 GCTGACTCAGA 11 V_SIRT6_01_M01797 TRANSFAC - 58910867 58910874 7.0E-06 AGATAAGA 8 V_FPM315_01_M01587 TRANSFAC + 58907049 58907060 2.0E-06 GAGGGAGGAGGC 12 V_ASCL2_04_M02841 TRANSFAC + 58911874 58911889 1.0E-05 CTCTGCCCACCCCATC 16 V_T3RBETA_Q6_01_M02119 TRANSFAC - 58907427 58907443 2.0E-06 GGAGGAGAGGAGGTCAG 17 V_IRC900814_03_M02766 TRANSFAC + 58912016 58912031 5.0E-06 ATCGACGACAATAAAT 16 V_VMAF_01_M00035 TRANSFAC + 58906277 58906295 0.0E+00 TATTGCTGACTCAGAACCA 19 V_NFE2_Q6_M02104 TRANSFAC - 58906276 58906291 7.0E-06 TCTGAGTCAGCAATAC 16 V_SMAD3_Q6_M00701 TRANSFAC + 58911736 58911744 1.0E-05 TGTCTGCCT 9 V_IPF1_Q4_01_M01013 TRANSFAC + 58907098 58907112 2.0E-06 TCTGTCATTACTCTG 15 V_SP1_Q2_01_M00933 TRANSFAC - 58906905 58906914 4.0E-06 CCCCGCCCCC 10 V_CMAF_01_M01070 TRANSFAC + 58906275 58906293 2.0E-06 AGTATTGCTGACTCAGAAC 19 V_SP1_Q4_01_M00932 TRANSFAC + 58906904 58906916 1.0E-06 AGGGGGCGGGGCA 13 V_GATA1_06_M00347 TRANSFAC - 58910867 58910876 1.0E-05 CAAGATAAGA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.