Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
646498 chromosome 3 open reading frame 84 chr3 -49228791 - 49234291 49229291

Transcription Factor Binding Sites

 
Download all TFBS in the promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 49229359 49229374 1.0E-06 AAGGGGCAACAGGTCA 16
ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 49229400 49229411 6.0E-06 GTTTTTCTCACA 12
RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 49229356 49229373 4.0E-06 AGGGGCAACAGGTCATGT 18
MEF2A_MA0052.1 JASPAR + 49229444 49229453 4.0E-06 TTATATATAG 10
MEF2A_MA0052.1 JASPAR - 49229444 49229453 5.0E-06 CTATATATAA 10
NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 49229358 49229373 2.0E-06 AGGGGCAACAGGTCAT 16
NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 49229366 49229381 9.0E-06 AAGGACAAAGGGGCAA 16
POU1F1_POU_DBD_monomeric_17_1 SELEX - 49229497 49229513 1.0E-06 TCTTTGAATATTTCATT 17
Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 49229359 49229373 8.0E-06 AGGGGCAACAGGTCA 15
RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 49229358 49229373 3.0E-06 AGGGGCAACAGGTCAT 16
RARA_nuclearreceptor_full_dimeric_15_1 SELEX - 49229359 49229373 1.0E-06 AGGGGCAACAGGTCA 15
RARA_nuclearreceptor_full_dimeric_15_1 SELEX - 49229367 49229381 2.0E-06 AAGGACAAAGGGGCA 15
V_HNF3G_Q4_M02015 TRANSFAC + 49229340 49229347 7.0E-06 TGTTTGTT 8
V_GR_Q6_M00192 TRANSFAC - 49229509 49229527 9.0E-06 TGCATTTAAAATGTTCTTT 19
V_ZBRK1_01_M01105 TRANSFAC - 49229357 49229371 5.0E-06 GGGCAACAGGTCATG 15
V_TBP_06_M02814 TRANSFAC + 49229441 49229456 2.0E-06 CCCTTATATATAGAAA 16
V_TBP_06_M02814 TRANSFAC - 49229441 49229456 1.0E-05 TTTCTATATATAAGGG 16
V_GR_Q6_02_M01836 TRANSFAC - 49229509 49229521 2.0E-06 TAAAATGTTCTTT 13
V_ZFP105_04_M02931 TRANSFAC - 49224544 49224560 9.0E-06 GGGCGTCAATAAATTAT 17
V_OCT1_Q6_M00195 TRANSFAC + 49229501 49229515 9.0E-06 AAATATTCAAAGAAC 15
V_SMAD3_03_M02794 TRANSFAC - 49228511 49228527 7.0E-06 AGTTCCCAGACATGATC 17
V_NFE2_Q6_M02104 TRANSFAC - 49229340 49229355 8.0E-06 ACTGTCTCAACAAACA 16
V_SMAD1_01_M01590 TRANSFAC - 49229370 49229381 7.0E-06 AAGGACAAAGGG 12
V_NANOG_02_M01247 TRANSFAC - 49224561 49224580 9.0E-06 TTGAGAGAACAAAACTCATT 20
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL