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LINGO3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 645191 leucine rich repeat and Ig domain containing 3 chr19 - 2307656 - 2313156 2308156 Transcription Factor Binding Sites   Download all TFBS in the LINGO3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 2304319 2304331 4.0E-06 GAAAAAATAAACA 13 SOX21_HMG_DBD_dimeric_15_1 SELEX + 2304182 2304196 8.0E-06 AACAATGCCTGTGTG 15 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 2304458 2304466 5.0E-06 CTTAATCCC 9 Foxa2_MA0047.2 JASPAR - 2304320 2304331 9.0E-06 TGTTTATTTTTT 12 SOX4_HMG_DBD_dimeric_16_1 SELEX + 2304181 2304196 5.0E-06 AAACAATGCCTGTGTG 16 SRY_HMG_DBD_dimeric_15_1 SELEX - 2304182 2304196 6.0E-06 CACACAGGCATTGTT 15 FOXA1_MA0148.1 JASPAR - 2304321 2304331 9.0E-06 TGTTTATTTTT 11 SOX2_HMG_full_dimeric_17_1 SELEX - 2304181 2304197 3.0E-06 GCACACAGGCATTGTTT 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 2304215 2304231 3.0E-06 AGAAACAGCAGTGAACA 17 FOXL1_forkhead_full_dimeric_13_1 SELEX + 2304320 2304332 2.0E-06 AAAAAATAAACAG 13 SOX8_HMG_full_dimeric_15_1 SELEX + 2304182 2304196 6.0E-06 AACAATGCCTGTGTG 15 PITX1_homeodomain_full_monomeric_8_1 SELEX - 2304458 2304465 1.0E-05 TTAATCCC 8 TCF7L1_HMG_full_monomeric_12_1 SELEX - 2309152 2309163 1.0E-06 GAAGATCAAAGG 12 LEF1_HMG_DBD_monomeric_15_1 SELEX - 2309149 2309163 0.0E+00 GAAGATCAAAGGCCT 15 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 2304172 2304182 3.0E-06 AGCACTTAAAA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 2304321 2304331 1.0E-06 AAAAATAAACA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 2304318 2304331 2.0E-06 GGAAAAAATAAACA 14 SOX18_HMG_full_dimeric_15_1 SELEX + 2304182 2304196 4.0E-06 AACAATGCCTGTGTG 15 SOX15_HMG_full_dimeric_15_1 SELEX - 2304182 2304196 3.0E-06 CACACAGGCATTGTT 15 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 2309152 2309163 0.0E+00 GAAGATCAAAGG 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 2304321 2304331 0.0E+00 AAAAATAAACA 11 SOX7_HMG_full_dimeric_17_1 SELEX + 2304181 2304197 3.0E-06 AAACAATGCCTGTGTGC 17 Mycn_MA0104.2 JASPAR - 2308303 2308312 8.0E-06 CCCACGTGGC 10 Foxd3_MA0041.1 JASPAR - 2304319 2304330 5.0E-06 GTTTATTTTTTC 12 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 2304458 2304465 1.0E-05 TTAATCCC 8 Sox11_HMG_DBD_dimeric_15_1 SELEX + 2304182 2304196 1.0E-05 AACAATGCCTGTGTG 15 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 2304172 2304182 2.0E-06 AGCACTTAAAA 11 Sox1_HMG_DBD_dimeric_15_1 SELEX - 2304182 2304196 5.0E-06 CACACAGGCATTGTT 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 2304319 2304331 0.0E+00 GAAAAAATAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 2304319 2304331 1.0E-06 GAAAAAATAAACA 13 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 2304431 2304442 4.0E-06 TTACATGGAAAA 12 SOX9_HMG_full_dimeric_17_1 SELEX + 2304181 2304197 2.0E-06 AAACAATGCCTGTGTGC 17 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 2304172 2304182 3.0E-06 AGCACTTAAAA 11 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 2304318 2304331 4.0E-06 GGAAAAAATAAACA 14 V_HNF3B_01_M00131 TRANSFAC - 2304322 2304336 2.0E-06 TTCCCTGTTTATTTT 15 V_FREAC7_01_M00293 TRANSFAC + 2304320 2304335 3.0E-06 AAAAAATAAACAGGGA 16 V_LEF1_04_M02774 TRANSFAC + 2309148 2309164 2.0E-06 CAGGCCTTTGATCTTCG 17 V_OBOX5_05_M03066 TRANSFAC + 2304454 2304470 6.0E-06 AGATGGGATTAAGTAAG 17 V_FOXD3_01_M00130 TRANSFAC - 2304319 2304330 5.0E-06 GTTTATTTTTTC 12 V_NKX29_01_M01352 TRANSFAC - 2304166 2304182 4.0E-06 TTTTAAGTGCTTGTTGA 17 V_TCF4_Q5_01_M02033 TRANSFAC - 2309150 2309159 7.0E-06 ATCAAAGGCC 10 V_ISL2_01_M01328 TRANSFAC + 2304168 2304183 7.0E-06 AACAAGCACTTAAAAA 16 V_AP4_Q6_M00176 TRANSFAC - 2309810 2309819 2.0E-06 CACAGCTGGT 10 V_HNF3_Q6_01_M01012 TRANSFAC - 2304319 2304336 0.0E+00 TTCCCTGTTTATTTTTTC 18 V_GATA_C_M00203 TRANSFAC + 2304417 2304427 4.0E-06 AGATAAGGCCA 11 V_NKX24_01_M01350 TRANSFAC + 2304169 2304184 9.0E-06 ACAAGCACTTAAAAAC 16 V_PU1_Q4_M01172 TRANSFAC + 2303157 2303175 9.0E-06 CCCATCTGCTTCCTGTCTC 19 V_CMYC_02_M01154 TRANSFAC - 2308302 2308313 9.0E-06 GCCCACGTGGCC 12 V_NFAT2_01_M01748 TRANSFAC + 2304435 2304443 3.0E-06 ATGGAAAAA 9 V_TCFAP2E_04_M02926 TRANSFAC + 2304314 2304327 1.0E-06 TATGGGAAAAAATA 14 V_WT1_Q6_01_M02036 TRANSFAC - 2308239 2308248 4.0E-06 CGCCCCCGCC 10 V_ETS_Q4_M00771 TRANSFAC + 2303160 2303171 9.0E-06 ATCTGCTTCCTG 12 V_CRX_Q4_M00623 TRANSFAC - 2304456 2304468 8.0E-06 TACTTAATCCCAT 13 V_OBOX5_02_M01480 TRANSFAC + 2304454 2304470 6.0E-06 AGATGGGATTAAGTAAG 17 V_HELIOSA_02_M01004 TRANSFAC + 2304433 2304443 5.0E-06 ACATGGAAAAA 11 V_GFI1_01_M00250 TRANSFAC + 2304233 2304256 6.0E-06 AACAGACAAATCCCTGCTTTCTGT 24 V_GATA3_05_M02859 TRANSFAC + 2304448 2304469 8.0E-06 CTCTGCAGATGGGATTAAGTAA 22 V_NKX31_02_M02782 TRANSFAC + 2304168 2304184 3.0E-06 AACAAGCACTTAAAAAC 17 V_NKX26_01_M01322 TRANSFAC + 2304169 2304184 7.0E-06 ACAAGCACTTAAAAAC 16 V_HNF3_Q6_M00791 TRANSFAC + 2304321 2304333 2.0E-06 AAAAATAAACAGG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 2304321 2304331 1.0E-06 TGTTTATTTTT 11 V_NKX22_02_M01372 TRANSFAC + 2304169 2304185 3.0E-06 ACAAGCACTTAAAAACA 17 V_MATH1_Q2_M01716 TRANSFAC - 2309809 2309818 6.0E-06 ACAGCTGGTG 10 V_NKX52_01_M01315 TRANSFAC + 2304169 2304185 1.0E-06 ACAAGCACTTAAAAACA 17 V_AP4_Q5_M00175 TRANSFAC - 2309810 2309819 6.0E-06 CACAGCTGGT 10 V_HMX1_02_M01481 TRANSFAC + 2304169 2304185 4.0E-06 ACAAGCACTTAAAAACA 17 V_ZBRK1_01_M01105 TRANSFAC - 2304184 2304198 7.0E-06 GGCACACAGGCATTG 15 V_XFD2_01_M00268 TRANSFAC + 2304322 2304335 2.0E-06 AAAATAAACAGGGA 14 V_HFH1_01_M00129 TRANSFAC - 2304323 2304334 8.0E-06 CCCTGTTTATTT 12 V_STAT4_Q5_M02117 TRANSFAC + 2304210 2304219 8.0E-06 TTAAGAGAAA 10 V_MYCN_01_M02259 TRANSFAC - 2308303 2308312 8.0E-06 CCCACGTGGC 10 V_NKX23_01_M01457 TRANSFAC - 2304167 2304182 0.0E+00 TTTTAAGTGCTTGTTG 16 V_NKX32_02_M01482 TRANSFAC + 2304168 2304184 0.0E+00 AACAAGCACTTAAAAAC 17 V_GATA4_Q3_M00632 TRANSFAC - 2304243 2304254 2.0E-06 AGAAAGCAGGGA 12 V_CIZ_01_M00734 TRANSFAC + 2304319 2304327 3.0E-06 GAAAAAATA 9 V_NKX25_03_M01414 TRANSFAC + 2304169 2304184 1.0E-05 ACAAGCACTTAAAAAC 16 V_TAL1_01_M01591 TRANSFAC - 2309732 2309744 1.0E-05 CCTCCTTCTCACC 13 V_GATA1_04_M00128 TRANSFAC + 2304414 2304426 9.0E-06 TGCAGATAAGGCC 13 V_AREB6_02_M00413 TRANSFAC - 2303274 2303285 9.0E-06 TCTCACCTGTTT 12 V_FOXL1_04_M02753 TRANSFAC + 2304320 2304336 9.0E-06 AAAAAATAAACAGGGAA 17 V_LUN1_01_M00480 TRANSFAC - 2309461 2309477 3.0E-06 TCCCAGCTACTTGGGAG 17 V_NKX3A_02_M01383 TRANSFAC + 2304167 2304183 3.0E-06 CAACAAGCACTTAAAAA 17 V_MAX_04_M02881 TRANSFAC - 2304293 2304306 9.0E-06 CTGCCATGTGACAG 14 V_PITX1_01_M01484 TRANSFAC - 2304396 2304412 6.0E-06 TTCCGGGGATTAGAACC 17 V_BDP1_01_M01796 TRANSFAC - 2309978 2309989 1.0E-06 GGAATTGAACCA 12 V_DOBOX5_01_M01463 TRANSFAC + 2304454 2304470 4.0E-06 AGATGGGATTAAGTAAG 17 V_FOXA2_03_M02260 TRANSFAC - 2304320 2304331 9.0E-06 TGTTTATTTTTT 12 V_LMO2COM_02_M00278 TRANSFAC + 2304416 2304424 3.0E-06 CAGATAAGG 9 V_NFAT2_02_M01749 TRANSFAC + 2304431 2304441 6.0E-06 TTACATGGAAA 11 V_TBX5_Q5_M01044 TRANSFAC - 2308291 2308300 3.0E-06 CTCACACCTG 10 V_LEF1TCF1_Q4_M00978 TRANSFAC + 2309152 2309162 0.0E+00 CCTTTGATCTT 11 V_HSF_Q6_M00641 TRANSFAC - 2309741 2309753 8.0E-06 TTCCCGAGGCCTC 13 V_FOXJ2_01_M00422 TRANSFAC + 2304319 2304336 8.0E-06 GAAAAAATAAACAGGGAA 18 V_BARHL2_01_M01446 TRANSFAC + 2304168 2304183 8.0E-06 AACAAGCACTTAAAAA 16 V_SOX12_03_M02796 TRANSFAC - 2304176 2304189 8.0E-06 GCATTGTTTTTAAG 14 V_PIT1_Q6_M00802 TRANSFAC - 2304457 2304474 0.0E+00 AATTCTTACTTAATCCCA 18 V_SRY_05_M02917 TRANSFAC + 2304176 2304192 5.0E-06 CTTAAAAACAATGCCTG 17 V_ARP1_01_M00155 TRANSFAC + 2309982 2309997 8.0E-06 TCAATTCCTGGCCCCA 16 V_HMX3_02_M01413 TRANSFAC + 2304169 2304185 1.0E-06 ACAAGCACTTAAAAACA 17 V_OBOX5_01_M01381 TRANSFAC + 2304454 2304470 2.0E-06 AGATGGGATTAAGTAAG 17 V_BRF1_01_M01747 TRANSFAC + 2309978 2309990 3.0E-06 TGGTTCAATTCCT 13 V_TCF3_05_M02920 TRANSFAC + 2304315 2304329 1.0E-06 ATGGGAAAAAATAAA 15 V_OTX1_01_M01366 TRANSFAC + 2304454 2304470 4.0E-06 AGATGGGATTAAGTAAG 17 V_OBOX6_06_M03067 TRANSFAC - 2304454 2304470 2.0E-06 CTTACTTAATCCCATCT 17 V_OTX3_01_M01403 TRANSFAC + 2304453 2304469 4.0E-06 CAGATGGGATTAAGTAA 17 V_IPF1_06_M01438 TRANSFAC + 2303297 2303312 5.0E-06 CAGCTAATGAGCAGAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.