Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SGCA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6442 sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) chr17 + 48238365 - 48243865 48243365 Transcription Factor Binding Sites   Download all TFBS in the SGCA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 48246492 48246510 8.0E-06 TTGCCTGAAGATGGTGGCA 19 CTCF_MA0139.1 JASPAR + 48246826 48246844 9.0E-06 CCCCCACAAGAGGGCAACA 19 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 48241415 48241426 4.0E-06 TCCAAAAATAGC 12 ESR2_MA0258.1 JASPAR - 48246598 48246615 5.0E-06 CAGGGTCACATTGCACCA 18 ELF4_ETS_full_monomeric_12_1 SELEX - 48246583 48246594 1.0E-06 AACGCGGAAGTG 12 EWSR1-FLI1_MA0149.1 JASPAR - 48241553 48241570 0.0E+00 GGGAGGGAGGAAGAAAGG 18 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 48241415 48241426 5.0E-06 TCCAAAAATAGC 12 POU2F2_POU_DBD_monomeric_11_1 SELEX + 48238676 48238686 6.0E-06 ATATGGAAATG 11 ZNF238_C2H2_full_monomeric_13_1 SELEX + 48238440 48238452 1.0E-05 GATCCAGCTGTGC 13 MEF2B_MADS_full_dimeric_12_1 SELEX + 48241415 48241426 4.0E-06 TCCAAAAATAGC 12 CUX1_CUT_DBD_dimeric_18_1 SELEX - 48238355 48238372 5.0E-06 ATCAATGAGATAATGGAA 8 ELF3_ETS_full_monomeric_13_1 SELEX - 48246582 48246594 2.0E-06 AACGCGGAAGTGG 13 MEF2A_MA0052.1 JASPAR - 48241416 48241425 8.0E-06 CTATTTTTGG 10 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 48246824 48246835 7.0E-06 TTCCCCCACAAG 12 SP1_MA0079.2 JASPAR - 48241440 48241449 7.0E-06 CCCCGCCCCC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 48238678 48238691 1.0E-06 ATGGAAATGTCCTT 14 SP4_C2H2_full_monomeric_17_1 SELEX + 48246518 48246534 8.0E-06 ATAGCCACGCCCGCTGT 17 CTCF_C2H2_full_monomeric_17_1 SELEX + 48239010 48239026 6.0E-06 CGCGCCCTCTCGTGGCG 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 48246637 48246647 7.0E-06 ACCCCACCCCC 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 48238619 48238634 3.0E-06 TACCCAGAATCCCCCG 16 POU3F1_POU_DBD_monomeric_12_1 SELEX + 48238676 48238687 4.0E-06 ATATGGAAATGT 12 CUX2_CUT_DBD_dimeric_18_1 SELEX - 48238355 48238372 2.0E-06 ATCAATGAGATAATGGAA 8 POU6F2_POU_full_monomeric_10_1 SELEX - 48243716 48243725 8.0E-06 GCTCATTAAA 10 EHF_ETS_full_monomeric_12_1 SELEX - 48246583 48246594 2.0E-06 AACGCGGAAGTG 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 48238369 48238384 7.0E-06 GGGGTAAGAAGGATCA 16 PPARG_MA0066.1 JASPAR - 48246596 48246615 4.0E-06 CAGGGTCACATTGCACCAGT 20 ELF5_ETS_full_monomeric_11_1 SELEX - 48246583 48246593 7.0E-06 ACGCGGAAGTG 11 ELF1_ETS_full_monomeric_12_1 SELEX - 48246583 48246594 1.0E-06 AACGCGGAAGTG 12 NR3C1_MA0113.1 JASPAR + 48238745 48238762 1.0E-06 GAGATCATTATGTCCAGC 18 ELF3_ETS_DBD_monomeric_12_1 SELEX - 48246583 48246594 2.0E-06 AACGCGGAAGTG 12 ETV6_ETS_full_monomeric_10_1 SELEX - 48246583 48246592 5.0E-06 CGCGGAAGTG 10 RUNX1_MA0002.2 JASPAR - 48239945 48239955 5.0E-06 TTCTGTGGTCT 11 TP53_MA0106.1 JASPAR + 48238678 48238697 7.0E-06 ATGGAAATGTCCTTGGAAGT 20 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 48246824 48246837 6.0E-06 TTCCCCCACAAGAG 14 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 48246607 48246625 9.0E-06 GTGACCCTGGTGAGGAGGG 19 IRF3_IRF_full_trimeric_21_1 SELEX - 48238346 48238366 7.0E-06 GAGATAATGGAAGCGAAAGCG 2 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 48246824 48246835 7.0E-06 TTCCCCCACAAG 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 48238676 48238687 4.0E-06 ATATGGAAATGT 12 RREB1_MA0073.1 JASPAR - 48246632 48246651 7.0E-06 CCCCACCCCACCCCCGGACC 20 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 48247219 48247228 6.0E-06 AACATATTTT 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 48247219 48247228 8.0E-06 AAAATATGTT 10 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 48247216 48247229 7.0E-06 ATCAACATATTTTA 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 48247216 48247229 1.0E-05 TAAAATATGTTGAT 14 V_FOXP1_01_M00987 TRANSFAC - 48246774 48246793 5.0E-06 GTGTGTGTGTGTGTGTGTAT 20 V_TEL1_02_M02070 TRANSFAC - 48246583 48246592 8.0E-06 CGCGGAAGTG 10 V_GATA1_Q6_M02004 TRANSFAC + 48239174 48239188 1.0E-06 GATGCAGATAAAGAA 15 V_NF1_Q6_01_M00806 TRANSFAC - 48247201 48247217 1.0E-05 ATGGGACAGTGCCAAGC 17 V_MEF2_02_M00231 TRANSFAC + 48241409 48241430 5.0E-06 GGTGGCTCCAAAAATAGCCAGG 22 V_OCT1_01_M00135 TRANSFAC + 48238672 48238690 7.0E-06 GGGGATATGGAAATGTCCT 19 V_AP4_Q6_M00176 TRANSFAC - 48238442 48238451 5.0E-06 CACAGCTGGA 10 V_EAR2_Q2_M01728 TRANSFAC + 48239146 48239159 3.0E-06 TTTCCTTTGTCCCT 14 V_SP1_03_M02281 TRANSFAC - 48241440 48241449 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 48241441 48241451 3.0E-06 GGGGCGGGGAG 11 V_SP1_02_M01303 TRANSFAC + 48246638 48246648 5.0E-06 GGGGTGGGGTG 11 V_NR3C1_01_M02219 TRANSFAC + 48238745 48238762 1.0E-06 GAGATCATTATGTCCAGC 18 V_BARBIE_01_M00238 TRANSFAC + 48238610 48238624 1.0E-06 ATAAAAAGGCGGGGG 15 V_RPC155_01_M01798 TRANSFAC - 48246866 48246881 8.0E-06 GCGGGAGTTGGAGACC 16 V_TRF1_01_M01237 TRANSFAC - 48246928 48246942 1.0E-05 GTAGGGAAAGGGTTT 15 V_RUNX1_01_M02257 TRANSFAC - 48239945 48239955 5.0E-06 TTCTGTGGTCT 11 V_STAF_01_M00262 TRANSFAC - 48238615 48238636 0.0E+00 TGTACCCAGAATCCCCCGCCTT 22 V_KROX_Q6_M00982 TRANSFAC + 48238945 48238958 4.0E-06 CCCGCCCCCGACTC 14 V_AMEF2_Q6_M00403 TRANSFAC + 48243750 48243767 4.0E-06 CAGGCTAAATTTGGCCCT 18 V_MAZ_Q6_01_M02023 TRANSFAC - 48243344 48243357 5.0E-06 CAGGGAGGAGAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 48246637 48246650 4.0E-06 GGGGGTGGGGTGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 48246672 48246685 1.0E-06 ATGGGAGGGAAGGG 14 V_REST_01_M01256 TRANSFAC - 48238467 48238488 6.0E-06 AGGAGGGACTGTCCGAGGTGCC 22 V_SP1SP3_Q4_M01219 TRANSFAC - 48241437 48241447 8.0E-06 CCGCCCCCTGC 11 V_ERR1_Q3_M01841 TRANSFAC + 48238682 48238696 6.0E-06 AAATGTCCTTGGAAG 15 V_SOX12_04_M02900 TRANSFAC + 48239175 48239190 5.0E-06 ATGCAGATAAAGAAAA 16 V_MEF2_04_M00233 TRANSFAC + 48241409 48241430 5.0E-06 GGTGGCTCCAAAAATAGCCAGG 22 V_RREB1_01_M00257 TRANSFAC - 48246638 48246651 1.0E-06 CCCCACCCCACCCC 14 V_MEF2_Q6_01_M00941 TRANSFAC - 48241416 48241427 2.0E-06 GGCTATTTTTGG 12 V_TEL1_01_M01993 TRANSFAC - 48246583 48246592 8.0E-06 CGCGGAAGTG 10 V_CTCF_02_M01259 TRANSFAC - 48239011 48239030 1.0E-06 AGTCCGCCACGAGAGGGCGC 20 V_CTCF_02_M01259 TRANSFAC + 48246489 48246508 9.0E-06 TACTTGCCTGAAGATGGTGG 20 V_CTCF_02_M01259 TRANSFAC + 48246823 48246842 2.0E-06 TTTCCCCCACAAGAGGGCAA 20 V_CTCF_01_M01200 TRANSFAC - 48239009 48239028 4.0E-06 TCCGCCACGAGAGGGCGCGT 20 V_CTCF_01_M01200 TRANSFAC + 48246491 48246510 8.0E-06 CTTGCCTGAAGATGGTGGCA 20 V_PAX8_B_M00328 TRANSFAC + 48239950 48239967 8.0E-06 ACAGAAACGCATGATGTG 18 V_TFIII_Q6_M00706 TRANSFAC - 48241565 48241573 6.0E-06 AGAGGGAGG 9 V_BCL6B_04_M02844 TRANSFAC - 48243487 48243502 7.0E-06 CTTACCACCCCTAAAT 16 V_SP4_Q5_M01273 TRANSFAC - 48241440 48241450 9.0E-06 TCCCCGCCCCC 11 V_MYOD_Q6_02_M02100 TRANSFAC - 48241396 48241404 8.0E-06 CAGCTGTCT 9 V_POU6F1_02_M01462 TRANSFAC + 48243713 48243729 4.0E-06 CCCTTTAATGAGCTGGC 17 V_LUN1_01_M00480 TRANSFAC - 48238657 48238673 8.0E-06 CCCCAGACATTTTGGGA 17 V_DELTAEF1_01_M00073 TRANSFAC - 48246461 48246471 8.0E-06 ACCCACCTTAA 11 V_AIRE_01_M00999 TRANSFAC - 48240037 48240062 1.0E-06 TTTGTAGTTGGATCTAGAGGCCTTAT 26 V_ZFP206_01_M01742 TRANSFAC + 48238976 48238986 4.0E-06 CGCGCAGGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 48238977 48238987 8.0E-06 TGCGCCTGCGC 11 V_FPM315_01_M01587 TRANSFAC + 48238822 48238833 9.0E-06 AGGGGAGGACGA 12 V_ZABC1_01_M01306 TRANSFAC + 48238539 48238546 1.0E-05 ATTCCAAC 8 V_DMRT2_01_M01147 TRANSFAC + 48247169 48247184 8.0E-06 TAATTGACAACATTCT 16 V_PUR1_Q4_M01721 TRANSFAC - 48247207 48247215 6.0E-06 GGGACAGTG 9 V_POU6F1_03_M01479 TRANSFAC + 48243713 48243729 3.0E-06 CCCTTTAATGAGCTGGC 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 48241553 48241570 0.0E+00 GGGAGGGAGGAAGAAAGG 18 V_VDR_Q3_M00444 TRANSFAC - 48243347 48243361 2.0E-06 GGGGCAGGGAGGAGA 15 V_SP1_Q2_01_M00933 TRANSFAC - 48241440 48241449 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC + 48241439 48241451 5.0E-06 AGGGGGCGGGGAG 13 V_TAACC_B_M00331 TRANSFAC + 48239933 48239955 6.0E-06 AAGACACTACTAAGACCACAGAA 23 V_ESR2_01_M02377 TRANSFAC - 48246598 48246615 5.0E-06 CAGGGTCACATTGCACCA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.