Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

RNF222


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
643904 chr17 +8296144 - 8306144 0

Transcription Factor Binding Sites

 
Download all TFBS in the RNF222 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
HSF2_HSF_DBD_trimeric_13_1 SELEX - 8297018 8297030 9.0E-06 TTCCAGAAGCATC 13
FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 8297407 8297418 4.0E-06 TAAAAAAACAAA 12
TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 8297537 8297547 3.0E-06 TGCCTGAGGCA 11
TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 8297537 8297547 1.0E-06 TGCCTCAGGCA 11
TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 8297537 8297547 4.0E-06 TGCCTGAGGCA 11
TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 8297537 8297547 1.0E-06 TGCCTCAGGCA 11
NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 8297139 8297155 3.0E-06 AGGTCACTGCCTCACCT 17
NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX - 8297139 8297155 3.0E-06 AGGTGAGGCAGTGACCT 17
HSF4_HSF_DBD_trimeric_13_1 SELEX - 8297018 8297030 6.0E-06 TTCCAGAAGCATC 13
TEAD3_TEA_DBD_dimeric_17_1 SELEX + 8297510 8297526 7.0E-06 TCATTCTCCAAATTCTT 17
Foxd3_MA0041.1 JASPAR - 8297408 8297419 5.0E-06 CTTTGTTTTTTT 12
TFAP2C_TFAP_full_dimeric_11_1 SELEX + 8297537 8297547 3.0E-06 TGCCTGAGGCA 11
TFAP2C_TFAP_full_dimeric_11_1 SELEX - 8297537 8297547 1.0E-06 TGCCTCAGGCA 11
Pou5f1_MA0142.1 JASPAR + 8297427 8297441 9.0E-06 CTTACACATTCAAAT 15
TEAD1_TEA_full_dimeric_17_1 SELEX + 8297510 8297526 5.0E-06 TCATTCTCCAAATTCTT 17
Sox2_MA0143.1 JASPAR - 8297406 8297420 4.0E-06 GCTTTGTTTTTTTAA 15
Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 8297537 8297547 6.0E-06 TGCCTGAGGCA 11
Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 8297537 8297547 3.0E-06 TGCCTCAGGCA 11
TEAD1_MA0090.1 JASPAR + 8297364 8297375 3.0E-06 TGCATTCCTCTG 12
V_ZSCAN4_03_M02838 TRANSFAC + 8297120 8297136 1.0E-05 ATCATGTACACACATGG 17
V_TCF3_01_M01594 TRANSFAC - 8297408 8297420 0.0E+00 GCTTTGTTTTTTT 13
V_FOXD3_01_M00130 TRANSFAC - 8297408 8297419 5.0E-06 CTTTGTTTTTTT 12
V_DEAF1_02_M01002 TRANSFAC - 8297279 8297303 8.0E-06 ACTAGCACGGGCTTTTCTGGAAAAT 25
V_MMEF2_Q6_M00405 TRANSFAC + 8297402 8297417 0.0E+00 CTGTTTAAAAAAACAA 16
V_POU5F1_02_M02245 TRANSFAC + 8297427 8297441 9.0E-06 CTTACACATTCAAAT 15
V_LXRB_RXRA_Q5_M02021 TRANSFAC + 8297137 8297151 1.0E-06 TGAGGTCACTGCCTC 15
V_ELF4_04_M02850 TRANSFAC + 8297404 8297420 3.0E-06 GTTTAAAAAAACAAAGC 17
V_FOXA2_02_M02853 TRANSFAC + 8297407 8297421 9.0E-06 TAAAAAAACAAAGCT 15
V_HNF3_Q6_M00791 TRANSFAC + 8297406 8297418 6.0E-06 TTAAAAAAACAAA 13
V_PAX5_01_M00143 TRANSFAC + 8296137 8296164 9.0E-06 GCAGCACCCAGGGCAGGATGGCGGCCAC 21
V_YY1_Q6_02_M01035 TRANSFAC + 8297273 8297283 5.0E-06 GTGGCCATTTT 11
V_ZBRK1_01_M01105 TRANSFAC - 8297438 8297452 1.0E-06 GGCCAGCAGGCATTT 15
V_TEF_01_M01305 TRANSFAC + 8297364 8297375 3.0E-06 TGCATTCCTCTG 12
V_MEF2_Q6_01_M00941 TRANSFAC - 8297405 8297416 6.0E-06 TGTTTTTTTAAA 12
V_OCT4_02_M01124 TRANSFAC - 8297404 8297418 6.0E-06 TTTGTTTTTTTAAAC 15
V_FOXO1_Q5_M01216 TRANSFAC + 8297410 8297418 1.0E-06 AAAAACAAA 9
V_IPF1_05_M01255 TRANSFAC + 8297430 8297441 7.0E-06 ACACATTCAAAT 12
V_MYOD_Q6_01_M00929 TRANSFAC + 8297204 8297221 1.0E-06 GGGAAGCAGGTGGCTAAG 18
V_FOXL1_04_M02753 TRANSFAC + 8297405 8297421 4.0E-06 TTTAAAAAAACAAAGCT 17
V_ZBTB12_04_M02928 TRANSFAC + 8297416 8297430 9.0E-06 AAAGCTTAGAACTTA 15
V_PLZF_02_M01075 TRANSFAC + 8297379 8297407 8.0E-06 TAAGTGTGGCTATAAAGCAATGACTGTTT 29
V_HSF_Q6_M00641 TRANSFAC - 8297018 8297030 4.0E-06 TTCCAGAAGCATC 13
V_LXRA_RXRA_Q3_M00647 TRANSFAC + 8297135 8297149 5.0E-06 GGTGAGGTCACTGCC 15
V_SOX2_01_M02246 TRANSFAC - 8297406 8297420 4.0E-06 GCTTTGTTTTTTTAA 15
V_SRF_06_M02916 TRANSFAC + 8297404 8297420 0.0E+00 GTTTAAAAAAACAAAGC 17
V_SRF_06_M02916 TRANSFAC + 8297405 8297421 1.0E-06 TTTAAAAAAACAAAGCT 17
V_SRF_06_M02916 TRANSFAC + 8297406 8297422 8.0E-06 TTAAAAAAACAAAGCTT 17
V_FOXO1_01_M00473 TRANSFAC + 8297409 8297418 2.0E-06 AAAAAACAAA 10
V_AP2ALPHA_03_M01047 TRANSFAC + 8297535 8297549 7.0E-06 GCTGCCTGAGGCAGT 15
V_AP2ALPHA_03_M01047 TRANSFAC - 8297535 8297549 7.0E-06 ACTGCCTCAGGCAGC 15
V_NANOG_02_M01247 TRANSFAC + 8297406 8297425 0.0E+00 TTAAAAAAACAAAGCTTAGA 20
V_OCT4_01_M01125 TRANSFAC + 8297427 8297441 5.0E-06 CTTACACATTCAAAT 15
V_HSF1_Q6_01_M02017 TRANSFAC + 8297018 8297031 8.0E-06 GATGCTTCTGGAAG 14
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL