Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

XYLT1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 64131 xylosyltransferase I chr16 - 17564238 - 17569738 17564738 Transcription Factor Binding Sites   Download all TFBS in the XYLT1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 17561977 17561995 6.0E-06 AGACCAGAAGGGGGCAGGC 19 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 17568229 17568236 5.0E-06 ATAAACAA 8 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 17565645 17565664 9.0E-06 TCCTCCTGGCTCAAGGTCAC 20 FOXF2_MA0030.1 JASPAR - 17568228 17568241 8.0E-06 CTGAGATAAACAAA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 17560948 17560959 5.0E-06 AAAATCAACATT 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 17568225 17568237 0.0E+00 GATAAACAAACAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 17560948 17560958 9.0E-06 AAAATCAACAT 11 TBP_MA0108.2 JASPAR + 17568244 17568258 6.0E-06 TTATAAAAAGCCATG 15 EWSR1-FLI1_MA0149.1 JASPAR + 17564884 17564901 5.0E-06 GGAGGAAAAGGAGGAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 17564888 17564905 2.0E-06 GAAAAGGAGGAGGGAAAG 18 EWSR1-FLI1_MA0149.1 JASPAR + 17564893 17564910 5.0E-06 GGAGGAGGGAAAGGAAGG 18 Esrrb_MA0141.1 JASPAR - 17565646 17565657 1.0E-06 GGCTCAAGGTCA 12 SOX8_HMG_DBD_dimeric_14_1 SELEX + 17563110 17563123 7.0E-06 GAAATATGCATTCA 14 ISL2_homeodomain_DBD_monomeric_8_1 SELEX - 17561487 17561494 1.0E-05 GCACTTAA 8 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 17568405 17568423 8.0E-06 TCTTTGGGTAAGGAGGTGA 19 TEAD1_TEA_full_monomeric_10_1 SELEX - 17562850 17562859 9.0E-06 AACATTCCTA 10 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 17563239 17563250 0.0E+00 TGCCCTAAGGCA 12 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 17563239 17563250 1.0E-06 TGCCTTAGGGCA 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 17561376 17561391 6.0E-06 TTAAAGCTCTTAAATA 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 17568226 17568236 0.0E+00 ATAAACAAACA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 17568243 17568252 9.0E-06 CTTATAAAAA 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 17568223 17568236 3.0E-06 ATAAACAAACAACT 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 17563108 17563121 9.0E-06 TAGAAATATGCATT 14 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 17563161 17563176 6.0E-06 TAGCCGTTAAAGGATA 16 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 17560946 17560959 7.0E-06 GAAAAATCAACATT 14 FOXI1_MA0042.1 JASPAR + 17568223 17568234 2.0E-06 AGTTGTTTGTTT 12 SP4_C2H2_full_monomeric_17_1 SELEX - 17564853 17564869 4.0E-06 CAGGCCCCGCCCTCTCC 17 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 17565645 17565654 3.0E-06 TCAAGGTCAC 10 NFATC1_NFAT_full_dimeric_15_1 SELEX + 17564984 17564998 2.0E-06 TTCCCAAGGCGGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 17564984 17564998 3.0E-06 TTTCCGCCTTGGGAA 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 17568226 17568236 0.0E+00 ATAAACAAACA 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 17568243 17568252 7.0E-06 CTTATAAAAA 10 Foxd3_MA0041.1 JASPAR - 17560949 17560960 1.0E-06 AAATGTTGATTT 12 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 17565645 17565655 5.0E-06 CTCAAGGTCAC 11 Nkx3-2_MA0122.1 JASPAR + 17561487 17561495 1.0E-05 TTAAGTGCA 9 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 17563239 17563250 0.0E+00 TGCCCTAAGGCA 12 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 17563239 17563250 0.0E+00 TGCCTTAGGGCA 12 Pou5f1_MA0142.1 JASPAR - 17560951 17560965 1.0E-06 CTTTGAAATGTTGAT 15 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 17568242 17568252 6.0E-06 ACTTATAAAAA 11 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 17565644 17565654 3.0E-06 TCAAGGTCACC 11 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 17568243 17568252 6.0E-06 CTTATAAAAA 10 TP53_MA0106.1 JASPAR - 17561424 17561443 2.0E-06 GAGGGCATGTCCATAAAAGA 20 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 17563239 17563250 0.0E+00 TGCCCTAAGGCA 12 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 17563239 17563250 3.0E-06 TGCCTTAGGGCA 12 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 17568229 17568236 5.0E-06 ATAAACAA 8 Sox2_MA0143.1 JASPAR - 17560952 17560966 8.0E-06 CCTTTGAAATGTTGA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 17568226 17568238 0.0E+00 AGATAAACAAACA 13 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 17563239 17563250 0.0E+00 TGCCCTAAGGCA 12 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 17563239 17563250 2.0E-06 TGCCTTAGGGCA 12 NFIA_NFI_full_monomeric_10_1 SELEX + 17567906 17567915 1.0E-06 AGTGCCAAAT 10 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 17560946 17560959 9.0E-06 GAAAAATCAACATT 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 17568223 17568236 2.0E-06 ATAAACAAACAACT 14 V_CEBPG_Q6_M00622 TRANSFAC + 17560887 17560899 5.0E-06 CTGATGTCTAAAA 13 V_HSF2_01_M00147 TRANSFAC + 17562852 17562861 1.0E-05 GGAATGTTCT 10 V_HNF3B_01_M00131 TRANSFAC - 17560948 17560962 0.0E+00 TGAAATGTTGATTTT 15 V_AP1_Q2_M00173 TRANSFAC - 17565375 17565385 0.0E+00 AGTGACTCAGT 11 V_GEN_INI_B_M00315 TRANSFAC - 17567912 17567919 1.0E-05 CCTCATTT 8 V_CDX2_Q5_01_M01659 TRANSFAC - 17561424 17561434 4.0E-06 TCCATAAAAGA 11 V_MAFK_03_M02776 TRANSFAC - 17560949 17560963 1.0E-05 TTGAAATGTTGATTT 15 V_SMAD3_Q6_01_M01888 TRANSFAC + 17563214 17563226 1.0E-06 AGACAGACACACA 13 V_NRSF_Q4_M01028 TRANSFAC + 17564329 17564347 4.0E-06 GCTGTCCCCGCGGTTCTCC 19 V_NRSF_Q4_M01028 TRANSFAC - 17564587 17564605 1.0E-05 GCGCTGCTCGCGGCGCTCA 19 V_NRSF_Q4_M01028 TRANSFAC - 17564596 17564614 8.0E-06 TCGCACTCGGCGCTGCTCG 19 V_HMGIY_Q3_M01010 TRANSFAC - 17563107 17563121 2.0E-06 AATGCATATTTCTAT 15 V_FOXD3_01_M00130 TRANSFAC - 17560949 17560960 2.0E-06 AAATGTTGATTT 12 V_ERR3_Q2_01_M02094 TRANSFAC - 17565644 17565656 1.0E-06 GCTCAAGGTCACC 13 V_LRH1_Q5_01_M02098 TRANSFAC - 17565646 17565656 2.0E-06 GCTCAAGGTCA 11 V_FOXO4_02_M00476 TRANSFAC + 17568226 17568239 8.0E-06 TGTTTGTTTATCTC 14 V_POU5F1_02_M02245 TRANSFAC - 17560951 17560965 1.0E-06 CTTTGAAATGTTGAT 15 V_CBF_02_M01080 TRANSFAC - 17568118 17568133 0.0E+00 AGGACTGTGGTTAAAT 16 V_AP2_Q6_01_M00915 TRANSFAC - 17564864 17564876 6.0E-06 CCTCCCCCAGGCC 13 V_FOXJ1_03_M02750 TRANSFAC - 17568224 17568239 6.0E-06 GAGATAAACAAACAAC 16 V_SPZ1_01_M00446 TRANSFAC + 17564893 17564907 6.0E-06 GGAGGAGGGAAAGGA 15 V_HFH4_01_M00742 TRANSFAC + 17568223 17568235 6.0E-06 AGTTGTTTGTTTA 13 V_NERF_Q2_M00531 TRANSFAC + 17562013 17562030 9.0E-06 GGGCAGGAACTGGGTGGG 18 V_AREB6_04_M00415 TRANSFAC - 17563207 17563215 8.0E-06 CTGTTTCTT 9 V_NKX24_01_M01350 TRANSFAC - 17561375 17561390 4.0E-06 TAAAGCTCTTAAATAT 16 V_SP1_02_M01303 TRANSFAC + 17565266 17565276 5.0E-06 GGGGTGGGGAG 11 V_FOXP3_01_M01599 TRANSFAC - 17568229 17568236 5.0E-06 ATAAACAA 8 V_HOXC13_01_M01317 TRANSFAC - 17561374 17561389 5.0E-06 AAAGCTCTTAAATATT 16 V_TCFAP2C_04_M02925 TRANSFAC + 17563238 17563251 6.0E-06 ATGCCCTAAGGCAG 14 V_TCFAP2C_04_M02925 TRANSFAC - 17563238 17563251 2.0E-06 CTGCCTTAGGGCAT 14 V_TAL1_GATA1_01_M02243 TRANSFAC - 17568093 17568110 2.0E-06 GTGGAGGAAGCAGATAAC 18 V_NRSE_B_M00325 TRANSFAC + 17564574 17564594 3.0E-06 AGCAGCAGCACCGTGAGCGCC 21 V_AP1_Q6_M00174 TRANSFAC - 17565375 17565385 3.0E-06 AGTGACTCAGT 11 V_ZNF219_01_M01122 TRANSFAC - 17564910 17564921 8.0E-06 CGCCCCCACCCC 12 V_GC_01_M00255 TRANSFAC + 17564855 17564868 2.0E-06 AGAGGGCGGGGCCT 14 V_GEN_INI3_B_M00314 TRANSFAC - 17567912 17567919 1.0E-05 CCTCATTT 8 V_POU3F2_01_M00463 TRANSFAC - 17563107 17563120 3.0E-06 ATGCATATTTCTAT 14 V_OCT1_02_M00136 TRANSFAC + 17563109 17563123 2.0E-06 AGAAATATGCATTCA 15 V_HOXB13_01_M01467 TRANSFAC + 17568240 17568255 5.0E-06 AGACTTATAAAAAGCC 16 V_ZFP410_03_M02832 TRANSFAC + 17565828 17565844 2.0E-06 GCATATGGGATGGCGTT 17 V_HNF3G_Q4_M02015 TRANSFAC + 17568226 17568233 7.0E-06 TGTTTGTT 8 V_ARID5A_03_M02736 TRANSFAC + 17561372 17561385 6.0E-06 CTAATATTTAAGAG 14 V_NKX31_02_M02782 TRANSFAC - 17561483 17561499 9.0E-06 TTGGTGCACTTAAGAAG 17 V_TATA_01_M00252 TRANSFAC + 17568244 17568258 6.0E-06 TTATAAAAAGCCATG 15 V_ZBP89_Q4_M01816 TRANSFAC - 17564868 17564877 2.0E-06 TCCTCCCCCA 10 V_AP1_Q4_M00188 TRANSFAC - 17565375 17565385 0.0E+00 AGTGACTCAGT 11 V_SP1_Q6_M00196 TRANSFAC + 17564855 17564867 4.0E-06 AGAGGGCGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 17565265 17565278 2.0E-06 AGGGGTGGGGAGGA 14 V_HNF3_Q6_M00791 TRANSFAC - 17568224 17568236 1.0E-06 ATAAACAAACAAC 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 17568226 17568236 0.0E+00 TGTTTGTTTAT 11 V_EGR1_Q6_M01873 TRANSFAC - 17564705 17564714 4.0E-06 GCGGGGGCGG 10 V_EGR1_04_M02848 TRANSFAC - 17561817 17561832 4.0E-06 TCAGGAGTGGGACATT 16 V_TATA_C_M00216 TRANSFAC - 17561425 17561434 6.0E-06 TCCATAAAAG 10 V_ELF5_01_M01197 TRANSFAC - 17563159 17563169 1.0E-05 TAAAGGATATT 11 V_IK2_01_M00087 TRANSFAC + 17565868 17565879 8.0E-06 CTCTGGGAATAC 12 Tal1_Gata1_MA0140.1 JASPAR - 17568093 17568110 2.0E-06 GTGGAGGAAGCAGATAAC 18 V_GR_Q6_M00192 TRANSFAC + 17565359 17565377 1.0E-05 GATGTACTAAGTGTTCACT 19 V_ZBRK1_01_M01105 TRANSFAC + 17565586 17565600 2.0E-06 GGGAAACAGGTCTTG 15 V_MEF2_Q6_01_M00941 TRANSFAC - 17568244 17568255 6.0E-06 GGCTTTTTATAA 12 V_CTCF_02_M01259 TRANSFAC - 17561979 17561998 4.0E-06 AGGAGACCAGAAGGGGGCAG 20 V_CTCF_01_M01200 TRANSFAC - 17561977 17561996 4.0E-06 GAGACCAGAAGGGGGCAGGC 20 V_MZF1_02_M00084 TRANSFAC + 17564814 17564826 2.0E-06 GGGTGATGGGGAA 13 V_BLIMP1_Q6_M01066 TRANSFAC + 17564893 17564908 1.0E-06 GGAGGAGGGAAAGGAA 16 V_ISGF4G_04_M02875 TRANSFAC - 17565089 17565102 3.0E-06 GGAAAACAGGACCT 14 V_AP1_Q2_01_M00924 TRANSFAC + 17565753 17565764 7.0E-06 TGACTCAGTCTT 12 V_FOXO1_Q5_M01216 TRANSFAC - 17568228 17568236 2.0E-06 ATAAACAAA 9 V_NKX32_02_M01482 TRANSFAC - 17561375 17561391 1.0E-05 TTAAAGCTCTTAAATAT 17 V_KAISO_01_M01119 TRANSFAC - 17565480 17565489 8.0E-06 ATCCTGCGAA 10 V_SF1_Q6_01_M01132 TRANSFAC + 17565646 17565654 3.0E-06 TGACCTTGA 9 V_BCL6B_04_M02844 TRANSFAC - 17565261 17565276 3.0E-06 CTCCCCACCCCTTCAA 16 V_FREAC2_01_M00290 TRANSFAC - 17568226 17568241 6.0E-06 CTGAGATAAACAAACA 16 V_USF_Q6_01_M00796 TRANSFAC + 17565201 17565212 8.0E-06 GGACACGTGAGA 12 V_HFH8_01_M00294 TRANSFAC + 17568223 17568235 3.0E-06 AGTTGTTTGTTTA 13 V_GATA1_05_M00346 TRANSFAC - 17568092 17568101 2.0E-06 GCAGATAACA 10 V_MYF6_04_M02885 TRANSFAC + 17563212 17563226 8.0E-06 ACAGACAGACACACA 15 V_FAC1_01_M00456 TRANSFAC + 17563220 17563233 0.0E+00 ACACACAACACATT 14 V_TAL1_01_M01591 TRANSFAC + 17565689 17565701 8.0E-06 CTTTCTCCTCTGT 13 V_TAL1_01_M01591 TRANSFAC - 17565971 17565983 1.0E-06 CTTTCTTCTCTTT 13 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 17568140 17568148 8.0E-06 GAGGGTGGG 9 V_AP1FJ_Q2_M00172 TRANSFAC - 17565375 17565385 0.0E+00 AGTGACTCAGT 11 V_FOXL1_04_M02753 TRANSFAC - 17568225 17568241 1.0E-05 CTGAGATAAACAAACAA 17 V_GEN_INI2_B_M00313 TRANSFAC - 17567912 17567919 1.0E-05 CCTCATTT 8 V_ERR2_01_M01589 TRANSFAC - 17565643 17565654 0.0E+00 TCAAGGTCACCG 12 V_TCFAP2B_03_M02820 TRANSFAC + 17563238 17563251 1.0E-06 ATGCCCTAAGGCAG 14 V_TCFAP2B_03_M02820 TRANSFAC - 17563238 17563251 1.0E-06 CTGCCTTAGGGCAT 14 V_FPM315_01_M01587 TRANSFAC + 17565659 17565670 3.0E-06 GGAGGAGGAGGA 12 V_NRSF_01_M00256 TRANSFAC + 17564574 17564594 9.0E-06 AGCAGCAGCACCGTGAGCGCC 21 V_FOXO3_01_M00477 TRANSFAC + 17568226 17568239 7.0E-06 TGTTTGTTTATCTC 14 V_TBX15_02_M01264 TRANSFAC + 17565197 17565214 6.0E-06 AGGTGGACACGTGAGAAA 18 V_MTATA_B_M00320 TRANSFAC - 17565793 17565809 6.0E-06 GTGTATAAAGCCCTGGG 17 V_ETS1_B_M00339 TRANSFAC + 17562015 17562029 1.0E-05 GCAGGAACTGGGTGG 15 V_ZFP281_01_M01597 TRANSFAC + 17564868 17564878 9.0E-06 TGGGGGAGGAG 11 V_ZFP281_01_M01597 TRANSFAC + 17564908 17564918 5.0E-06 AGGGGGTGGGG 11 V_EGR1_06_M02744 TRANSFAC + 17564704 17564717 4.0E-06 GCCGCCCCCGCGCT 14 V_SOX14_04_M02901 TRANSFAC + 17562019 17562035 7.0E-06 GAACTGGGTGGGCACAG 17 V_SOX2_01_M02246 TRANSFAC - 17560952 17560966 8.0E-06 CCTTTGAAATGTTGA 15 V_ZFP281_04_M02831 TRANSFAC - 17564906 17564920 1.0E-05 GCCCCCACCCCCTTC 15 V_HFH3_01_M00289 TRANSFAC + 17568223 17568235 0.0E+00 AGTTGTTTGTTTA 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 17564884 17564901 5.0E-06 GGAGGAAAAGGAGGAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 17564888 17564905 2.0E-06 GAAAAGGAGGAGGGAAAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 17564893 17564910 5.0E-06 GGAGGAGGGAAAGGAAGG 18 V_FOXJ2_01_M00422 TRANSFAC - 17568221 17568238 1.0E-06 AGATAAACAAACAACTCT 18 V_FOXJ2_01_M00422 TRANSFAC - 17568225 17568242 3.0E-06 TCTGAGATAAACAAACAA 18 V_ERR1_Q2_01_M02093 TRANSFAC - 17565643 17565653 4.0E-06 CAAGGTCACCG 11 V_SOX18_04_M02905 TRANSFAC - 17563112 17563127 8.0E-06 AGACTGAATGCATATT 16 V_SMAD3_Q6_M00701 TRANSFAC - 17563214 17563222 3.0E-06 TGTCTGTCT 9 V_FOXO1_01_M00473 TRANSFAC - 17568228 17568237 7.0E-06 GATAAACAAA 10 V_NFE2_01_M00037 TRANSFAC + 17565374 17565384 6.0E-06 CACTGAGTCAC 11 V_HNF3B_Q6_M02014 TRANSFAC + 17568225 17568233 1.0E-05 TTGTTTGTT 9 V_PIT1_Q6_M00802 TRANSFAC - 17563104 17563121 2.0E-06 AATGCATATTTCTATCAT 18 V_SOX15_04_M02903 TRANSFAC - 17565729 17565743 7.0E-06 CGGGATGAAATTTGA 15 V_FREAC4_01_M00292 TRANSFAC + 17560946 17560961 9.0E-06 GAAAAATCAACATTTC 16 V_FOXO4_01_M00472 TRANSFAC - 17568226 17568236 1.0E-06 ATAAACAAACA 11 V_AP2ALPHA_02_M01045 TRANSFAC - 17563238 17563252 1.0E-06 TCTGCCTTAGGGCAT 15 V_CP2_01_M00072 TRANSFAC + 17563861 17563871 9.0E-06 GCAAAAACCAG 11 V_SP1_Q4_01_M00932 TRANSFAC + 17564855 17564867 1.0E-06 AGAGGGCGGGGCC 13 V_GLIS2_04_M02863 TRANSFAC + 17561371 17561384 5.0E-06 TCTAATATTTAAGA 14 V_FOXK1_03_M02752 TRANSFAC - 17568225 17568241 3.0E-06 CTGAGATAAACAAACAA 17 V_T3RALPHA_Q6_M01724 TRANSFAC - 17563551 17563561 4.0E-06 GTTCAGGTCAC 11 V_OCT4_01_M01125 TRANSFAC - 17560951 17560965 1.0E-06 CTTTGAAATGTTGAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.