Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NPFFR1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 64106 neuropeptide FF receptor 1 chr10 - 72042950 - 72048450 72043450 Transcription Factor Binding Sites   Download all TFBS in the NPFFR1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 72041541 72041556 3.0E-06 TTACATAATTTATGGC 16 POU4F3_POU_DBD_monomeric_16_1 SELEX + 72041541 72041556 1.0E-06 TTACATAATTTATGGC 16 NFIX_NFI_full_monomeric_9_2 SELEX + 72042105 72042113 8.0E-06 TTTGCCAAT 9 POU1F1_POU_DBD_monomeric_17_1 SELEX + 72041538 72041554 3.0E-06 AATTTACATAATTTATG 17 POU3F1_POU_DBD_monomeric_12_2 SELEX - 72041542 72041553 1.0E-05 ATAAATTATGTA 12 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 72046590 72046606 1.0E-06 CCTTCCCACAACACATG 17 POU4F1_POU_DBD_monomeric_14_1 SELEX + 72041541 72041554 0.0E+00 TTACATAATTTATG 14 V_HOXA9_01_M01351 TRANSFAC - 72041543 72041559 5.0E-06 ATAGCCATAAATTATGT 17 V_CDX2_Q5_01_M01659 TRANSFAC - 72041546 72041556 1.0E-05 GCCATAAATTA 11 V_IRF3_05_M02767 TRANSFAC - 72041565 72041578 4.0E-06 AAAATTGGAAACCA 14 V_HOXB9_01_M01426 TRANSFAC - 72041544 72041559 9.0E-06 ATAGCCATAAATTATG 16 V_CDX2_01_M01449 TRANSFAC - 72041545 72041560 9.0E-06 GATAGCCATAAATTAT 16 V_OCT1_04_M00138 TRANSFAC - 72041532 72041554 0.0E+00 CATAAATTATGTAAATTAAATAA 23 V_POU6F1_01_M00465 TRANSFAC + 72041543 72041553 0.0E+00 ACATAATTTAT 11 V_POU6F1_01_M00465 TRANSFAC - 72041545 72041555 1.0E-06 CCATAAATTAT 11 V_AML2_Q3_01_M01854 TRANSFAC - 72046531 72046541 5.0E-06 CCAAACCATAT 11 V_HOXD8_01_M01432 TRANSFAC + 72041542 72041558 1.0E-06 TACATAATTTATGGCTA 17 V_SOX5_04_M02910 TRANSFAC + 72041541 72041555 4.0E-06 TTACATAATTTATGG 15 V_HOXC9_01_M01416 TRANSFAC - 72041545 72041560 7.0E-06 GATAGCCATAAATTAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.