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GFRA4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 64096 GDNF family receptor alpha 4 chr20 - 3643546 - 3649046 3644046 Transcription Factor Binding Sites   Download all TFBS in the GFRA4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 3646221 3646233 3.0E-06 ACAAACAAAAAAA 13 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 3639764 3639783 5.0E-06 ATCACCTCACCTAAGGAAGC 20 POU2F1_POU_DBD_dimeric_14_1 SELEX + 3647791 3647804 2.0E-06 CTTTCATATGCAAA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 3647791 3647804 8.0E-06 TTTGCATATGAAAG 14 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 3647703 3647714 4.0E-06 CATCATAAAATA 12 NFIA_NFI_full_dimeric_15_1 SELEX + 3647063 3647077 1.0E-06 TTGGCCCCATGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 3647063 3647077 5.0E-06 CTGGCATGGGGCCAA 15 TBR1_TBX_DBD_monomeric_10_1 SELEX + 3646826 3646835 9.0E-06 AGGTGTGACA 10 FOXA1_MA0148.1 JASPAR + 3646227 3646237 9.0E-06 TGTTTGTTTTG 11 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 3639801 3639818 1.0E-06 TGAGGCCACTGGAGGTCA 18 ESR2_MA0258.1 JASPAR + 3646540 3646557 1.0E-06 CAAGGTCTTTATGACCTG 18 ESR2_MA0258.1 JASPAR - 3646541 3646558 1.0E-05 ACAGGTCATAAAGACCTT 18 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 3646225 3646236 3.0E-06 AAAACAAACAAA 12 TBX5_TBX_DBD_dimeric_20_1 SELEX - 3646495 3646514 1.0E-05 AGGCGCGGTAGCTCACGCCT 20 FOXL1_forkhead_full_dimeric_13_1 SELEX - 3646226 3646238 7.0E-06 ACAAAACAAACAA 13 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 3639802 3639818 2.0E-06 GAGGCCACTGGAGGTCA 17 ZNF232_C2H2_full_monomeric_19_1 SELEX - 3639615 3639633 1.0E-05 CTGCCCAATGTGGACCCAG 19 NFIX_NFI_full_dimeric_15_2 SELEX + 3647063 3647077 6.0E-06 TTGGCCCCATGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 3647063 3647077 2.0E-06 CTGGCATGGGGCCAA 15 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 3639801 3639818 2.0E-06 TGAGGCCACTGGAGGTCA 18 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 3647704 3647713 5.0E-06 ATCATAAAAT 10 IRF1_MA0050.1 JASPAR - 3639676 3639687 7.0E-06 GATAATGAAACT 12 EOMES_TBX_DBD_monomeric_13_1 SELEX + 3646825 3646837 4.0E-06 AAGGTGTGACAGA 13 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 3647704 3647713 3.0E-06 ATCATAAAAT 10 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 3646227 3646237 1.0E-05 CAAAACAAACA 11 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 3639802 3639818 1.0E-06 GAGGCCACTGGAGGTCA 17 ESR1_MA0112.2 JASPAR + 3646537 3646556 2.0E-06 CAGCAAGGTCTTTATGACCT 20 ESR1_MA0112.2 JASPAR - 3646542 3646561 5.0E-06 GATACAGGTCATAAAGACCT 20 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 3647791 3647804 5.0E-06 CTTTCATATGCAAA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 3647791 3647804 9.0E-06 TTTGCATATGAAAG 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 3647792 3647803 9.0E-06 TTTCATATGCAA 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 3647792 3647803 8.0E-06 TTGCATATGAAA 12 TBR1_TBX_full_monomeric_11_1 SELEX + 3646825 3646835 4.0E-06 AAGGTGTGACA 11 FOXI1_MA0042.1 JASPAR + 3646224 3646235 1.0E-06 TTTTGTTTGTTT 12 znf143_MA0088.1 JASPAR - 3639655 3639674 0.0E+00 CATTTCCCAGCCTCCCTTGC 20 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 3646541 3646557 7.0E-06 AAGGTCTTTATGACCTG 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 3646227 3646237 6.0E-06 CAAAACAAACA 11 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 3639802 3639818 1.0E-06 GAGGCCACTGGAGGTCA 17 TBX21_TBX_full_monomeric_10_1 SELEX + 3646825 3646834 8.0E-06 AAGGTGTGAC 10 TBX2_TBX_full_monomeric_11_1 SELEX + 3646825 3646835 4.0E-06 AAGGTGTGACA 11 Foxd3_MA0041.1 JASPAR + 3646224 3646235 1.0E-06 TTTTGTTTGTTT 12 NFIB_NFI_full_dimeric_15_1 SELEX + 3647063 3647077 1.0E-06 TTGGCCCCATGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 3647063 3647077 6.0E-06 CTGGCATGGGGCCAA 15 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 3647792 3647803 6.0E-06 TTTCATATGCAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 3647792 3647803 5.0E-06 TTGCATATGAAA 12 Pou5f1_MA0142.1 JASPAR + 3647791 3647805 0.0E+00 CTTTCATATGCAAAC 15 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 3647704 3647713 2.0E-06 ATCATAAAAT 10 TBX20_TBX_DBD_monomeric_15_1 SELEX + 3646822 3646836 3.0E-06 AAGAAGGTGTGACAG 15 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 3647705 3647713 8.0E-06 ATCATAAAA 9 POU3F3_POU_DBD_dimeric_12_1 SELEX - 3647792 3647803 8.0E-06 TTGCATATGAAA 12 Sox2_MA0143.1 JASPAR + 3647790 3647804 0.0E+00 CCTTTCATATGCAAA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 3646223 3646235 1.0E-06 AAACAAACAAAAA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 3646227 3646239 2.0E-06 AACAAAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 3646221 3646233 1.0E-06 ACAAACAAAAAAA 13 RREB1_MA0073.1 JASPAR - 3646221 3646240 1.0E-06 AAACAAAACAAACAAAAAAA 20 RREB1_MA0073.1 JASPAR + 3647821 3647840 6.0E-06 CCATACACCAACCACCCCCT 20 RREB1_MA0073.1 JASPAR + 3647825 3647844 0.0E+00 ACACCAACCACCCCCTTCAA 20 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 3646224 3646237 8.0E-06 CAAAACAAACAAAA 14 V_FOXP1_01_M00987 TRANSFAC + 3646220 3646239 1.0E-06 ATTTTTTTGTTTGTTTTGTT 20 V_FOXP1_01_M00987 TRANSFAC + 3646221 3646240 2.0E-06 TTTTTTTGTTTGTTTTGTTT 20 V_FOXP1_01_M00987 TRANSFAC + 3646222 3646241 5.0E-06 TTTTTTGTTTGTTTTGTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 3646224 3646243 0.0E+00 TTTTGTTTGTTTTGTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 3646226 3646245 0.0E+00 TTGTTTGTTTTGTTTTTTGA 20 V_HNF3B_01_M00131 TRANSFAC + 3646222 3646236 2.0E-06 TTTTTTGTTTGTTTT 15 V_FREAC7_01_M00293 TRANSFAC - 3646223 3646238 8.0E-06 ACAAAACAAACAAAAA 16 V_TCF3_01_M01594 TRANSFAC + 3647790 3647802 3.0E-06 CCTTTCATATGCA 13 V_APOLYA_B_M00310 TRANSFAC - 3639669 3639683 7.0E-06 ATGAAACTGCATTTC 15 V_POU3F3_01_M03090 TRANSFAC - 3647792 3647808 5.0E-06 TCGGTTTGCATATGAAA 17 V_EVI1_05_M00082 TRANSFAC - 3646528 3646538 5.0E-06 TGATAAAATAG 11 V_ESR1_01_M02261 TRANSFAC + 3646537 3646556 2.0E-06 CAGCAAGGTCTTTATGACCT 20 V_ESR1_01_M02261 TRANSFAC - 3646542 3646561 5.0E-06 GATACAGGTCATAAAGACCT 20 V_FOXD3_01_M00130 TRANSFAC + 3646224 3646235 1.0E-06 TTTTGTTTGTTT 12 V_BCL6_01_M01183 TRANSFAC + 3646221 3646236 2.0E-06 TTTTTTTGTTTGTTTT 16 V_BCL6_01_M01183 TRANSFAC + 3646226 3646241 7.0E-06 TTGTTTGTTTTGTTTT 16 V_POU5F1_02_M02245 TRANSFAC + 3647791 3647805 0.0E+00 CTTTCATATGCAAAC 15 V_EOMES_03_M02747 TRANSFAC + 3646822 3646838 8.0E-06 AAGAAGGTGTGACAGAT 17 V_DR4_Q2_M00965 TRANSFAC - 3639802 3639818 1.0E-06 TGACCTCCAGTGGCCTC 17 V_OCTAMER_01_M01324 TRANSFAC - 3647792 3647808 5.0E-06 TCGGTTTGCATATGAAA 17 V_HNF3_Q6_01_M01012 TRANSFAC + 3646222 3646239 0.0E+00 TTTTTTGTTTGTTTTGTT 18 V_HNF3_Q6_01_M01012 TRANSFAC + 3646226 3646243 4.0E-06 TTGTTTGTTTTGTTTTTT 18 V_FOXJ1_03_M02750 TRANSFAC - 3646221 3646236 2.0E-06 AAAACAAACAAAAAAA 16 V_HFH4_01_M00742 TRANSFAC + 3646224 3646236 0.0E+00 TTTTGTTTGTTTT 13 V_PU1_Q4_M01172 TRANSFAC - 3639734 3639752 7.0E-06 AGCTCTCACTTCCTCATGG 19 V_ETS_Q4_M00771 TRANSFAC - 3639738 3639749 1.0E-05 TCTCACTTCCTC 12 V_SPI1_03_M02078 TRANSFAC + 3639737 3639746 4.0E-06 TGAGGAAGTG 10 V_ZFP105_03_M02827 TRANSFAC - 3646220 3646234 0.0E+00 AACAAACAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC - 3646223 3646237 6.0E-06 CAAAACAAACAAAAA 15 V_HNF3G_Q4_M02015 TRANSFAC + 3646227 3646234 7.0E-06 TGTTTGTT 8 V_GFI1_01_M00250 TRANSFAC + 3639586 3639609 0.0E+00 ACAAAAAAAATCAATGCTCTTAGC 24 V_STAF_01_M00262 TRANSFAC - 3639652 3639673 5.0E-06 ATTTCCCAGCCTCCCTTGCAGC 22 V_HNF3_Q6_M00791 TRANSFAC - 3646225 3646237 0.0E+00 CAAAACAAACAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 3646227 3646237 1.0E-06 TGTTTGTTTTG 11 V_SREBP_Q6_M01168 TRANSFAC - 3639772 3639786 7.0E-06 CCCATCACCTCACCT 15 V_ISRE_01_M00258 TRANSFAC + 3639675 3639689 9.0E-06 CAGTTTCATTATCTG 15 V_SOX12_04_M02900 TRANSFAC - 3646220 3646235 4.0E-06 AAACAAACAAAAAAAT 16 V_ERALPHA_01_M01801 TRANSFAC + 3646542 3646556 2.0E-06 AGGTCTTTATGACCT 15 V_ERALPHA_01_M01801 TRANSFAC - 3646542 3646556 2.0E-06 AGGTCATAAAGACCT 15 V_OCAB_Q6_M02113 TRANSFAC + 3647796 3647806 1.0E-06 ATATGCAAACC 11 V_HFH1_01_M00129 TRANSFAC + 3646224 3646235 7.0E-06 TTTTGTTTGTTT 12 V_STAF_02_M00264 TRANSFAC - 3639653 3639673 0.0E+00 ATTTCCCAGCCTCCCTTGCAG 21 V_SOX11_03_M02795 TRANSFAC - 3646219 3646235 7.0E-06 AAACAAACAAAAAAATC 17 V_TBX5_01_M01019 TRANSFAC + 3646824 3646835 4.0E-06 GAAGGTGTGACA 12 V_GATA4_Q3_M00632 TRANSFAC + 3639701 3639712 3.0E-06 AGAAAGAAGAGA 12 V_GATA1_05_M00346 TRANSFAC - 3646531 3646540 6.0E-06 GCTGATAAAA 10 V_FAC1_01_M00456 TRANSFAC - 3646227 3646240 0.0E+00 AAACAAAACAAACA 14 V_TAL1_01_M01591 TRANSFAC - 3646816 3646828 2.0E-06 CCTTCTTCTCTCT 13 V_FOXL1_02_M02857 TRANSFAC - 3646226 3646241 0.0E+00 AAAACAAAACAAACAA 16 V_FOXJ3_06_M02855 TRANSFAC - 3646226 3646242 1.0E-06 AAAAACAAAACAAACAA 17 V_FOXJ3_06_M02855 TRANSFAC - 3646690 3646706 6.0E-06 CACGCCAAAACACAAGA 17 V_ERR1_Q2_M00511 TRANSFAC - 3646549 3646562 8.0E-06 AGATACAGGTCATA 14 V_SMAD3_03_M02794 TRANSFAC - 3646591 3646607 3.0E-06 CGTTTCCAGACAGTTAC 17 V_NRF2_Q4_M00821 TRANSFAC + 3639672 3639684 1.0E-05 ATGCAGTTTCATT 13 V_FOXO3_01_M00477 TRANSFAC + 3646227 3646240 9.0E-06 TGTTTGTTTTGTTT 14 V_SPIC_02_M02077 TRANSFAC + 3639737 3639746 5.0E-06 TGAGGAAGTG 10 V_FOX_Q2_M00809 TRANSFAC + 3646224 3646236 0.0E+00 TTTTGTTTGTTTT 13 V_T3RBETA_Q6_01_M02119 TRANSFAC + 3639803 3639819 4.0E-06 AGGCCACTGGAGGTCAC 17 V_SMAD_Q6_01_M00974 TRANSFAC - 3646595 3646605 6.0E-06 TTTCCAGACAG 11 V_TBX5_Q5_M01044 TRANSFAC - 3646825 3646834 8.0E-06 GTCACACCTT 10 V_SOX2_01_M02246 TRANSFAC + 3647790 3647804 0.0E+00 CCTTTCATATGCAAA 15 V_HFH3_01_M00289 TRANSFAC + 3646224 3646236 1.0E-06 TTTTGTTTGTTTT 13 V_FOXJ2_01_M00422 TRANSFAC - 3646222 3646239 0.0E+00 AACAAAACAAACAAAAAA 18 V_HOMEZ_01_M01429 TRANSFAC - 3646520 3646536 5.0E-06 ATAAAATAGTTTGCAGT 17 V_HNF3B_Q6_M02014 TRANSFAC + 3646226 3646234 1.0E-05 TTGTTTGTT 9 V_CTF1_01_M01196 TRANSFAC - 3647063 3647076 2.0E-06 TGGCATGGGGCCAA 14 V_CTF1_01_M01196 TRANSFAC + 3647064 3647077 3.0E-06 TGGCCCCATGCCAG 14 TLX1_NFIC_MA0119.1 JASPAR - 3647063 3647076 2.0E-06 TGGCATGGGGCCAA 14 TLX1_NFIC_MA0119.1 JASPAR + 3647064 3647077 3.0E-06 TGGCCCCATGCCAG 14 V_PAX4_04_M00380 TRANSFAC - 3646214 3646243 1.0E-06 AAAAAACAAAACAAACAAAAAAATCAGCTT 30 V_ESR2_01_M02377 TRANSFAC + 3646540 3646557 1.0E-06 CAAGGTCTTTATGACCTG 18 V_ESR2_01_M02377 TRANSFAC - 3646541 3646558 1.0E-05 ACAGGTCATAAAGACCTT 18 V_SPIB_03_M02076 TRANSFAC + 3639737 3639746 5.0E-06 TGAGGAAGTG 10 V_NANOG_02_M01247 TRANSFAC - 3646218 3646237 8.0E-06 CAAAACAAACAAAAAAATCA 20 V_NANOG_02_M01247 TRANSFAC - 3646222 3646241 2.0E-06 AAAACAAAACAAACAAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 3646227 3646246 1.0E-06 CTCAAAAAACAAAACAAACA 20 V_NANOG_02_M01247 TRANSFAC - 3647785 3647804 8.0E-06 TTTGCATATGAAAGGCATGA 20 V_OCT4_01_M01125 TRANSFAC + 3647791 3647805 0.0E+00 CTTTCATATGCAAAC 15 V_ER_Q6_M00191 TRANSFAC + 3646540 3646558 3.0E-06 CAAGGTCTTTATGACCTGT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.