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SEMA3F Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6405 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F chr3 + 50187847 - 50193347 50192847 Transcription Factor Binding Sites   Download all TFBS in the SEMA3F promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 50192011 50192029 5.0E-06 TGCTCAGCAGGTGGCGGTG 19 Pax6_MA0069.1 JASPAR - 50195440 50195453 6.0E-06 TACAAGCATGAGTT 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 50192364 50192374 1.0E-05 GCCCCGCCCCC 11 TBX5_TBX_DBD_dimeric_20_1 SELEX - 50195481 50195500 9.0E-06 AGCTGTGGATATGCACACGT 20 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 50192438 50192446 2.0E-06 TATGCAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX + 50192438 50192446 2.0E-06 TATGCAAAT 9 EWSR1-FLI1_MA0149.1 JASPAR - 50194796 50194813 1.0E-06 GGGAGGGAGGCAGGCGGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194800 50194817 1.0E-06 GCAAGGGAGGGAGGCAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194804 50194821 6.0E-06 GGGAGCAAGGGAGGGAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194808 50194825 1.0E-06 GGGAGGGAGCAAGGGAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194823 50194840 1.0E-06 GGAAGGAAGGCTGGTGGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194827 50194844 0.0E+00 GGAGGGAAGGAAGGCTGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194831 50194848 0.0E+00 AGAAGGAGGGAAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194835 50194852 6.0E-06 GCAGAGAAGGAGGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 50194843 50194860 4.0E-06 GGAAGAAAGCAGAGAAGG 18 POU2F2_POU_DBD_monomeric_11_1 SELEX + 50192437 50192447 4.0E-06 CTATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 50192438 50192446 2.0E-06 TATGCAAAT 9 GLIS1_C2H2_DBD_monomeric_16_1 SELEX - 50193461 50193476 1.0E-06 AGACCCCCCACGTGGG 16 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 50192438 50192446 2.0E-06 TATGCAAAT 9 Sox17_HMG_DBD_dimeric_15_2 SELEX - 50189333 50189347 5.0E-06 CTAAGTTTCATTCAG 15 SP1_MA0079.2 JASPAR - 50192364 50192373 7.0E-06 CCCCGCCCCC 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 50195492 50195505 8.0E-06 TCCACAGCTGTTAT 14 TBX4_TBX_DBD_dimeric_20_1 SELEX + 50195481 50195500 1.0E-05 ACGTGTGCATATCCACAGCT 20 TBX4_TBX_DBD_dimeric_20_1 SELEX - 50195481 50195500 7.0E-06 AGCTGTGGATATGCACACGT 20 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 50189433 50189448 1.0E-06 CACCCAGGATGCCCTG 16 TBX20_TBX_full_dimeric_16_1 SELEX + 50195473 50195488 5.0E-06 AAGTGTGAACGTGTGC 16 POU3F1_POU_DBD_monomeric_12_1 SELEX + 50192437 50192448 9.0E-06 CTATGCAAATGT 12 ERF_ETS_DBD_monomeric_10_1 SELEX - 50195788 50195797 9.0E-06 ACAGGAAGTG 10 TFAP4_bHLH_full_dimeric_10_1 SELEX + 50195494 50195503 9.0E-06 CACAGCTGTT 10 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX - 50193572 50193580 4.0E-06 TGCTGTAAA 9 GRHL1_CP2_DBD_dimeric_10_1 SELEX - 50192830 50192839 6.0E-06 TAACCGGTTC 10 GLIS3_C2H2_DBD_monomeric_14_1 SELEX - 50193462 50193475 2.0E-06 GACCCCCCACGTGG 14 REST_MA0138.2 JASPAR + 50192628 50192648 2.0E-06 TCCAGCAGCCAGGAGAGCGCA 21 POU3F2_POU_DBD_monomeric_12_1 SELEX + 50192437 50192448 6.0E-06 CTATGCAAATGT 12 MSC_bHLH_full_dimeric_10_1 SELEX - 50195494 50195503 9.0E-06 AACAGCTGTG 10 GLIS2_C2H2_DBD_monomeric_14_1 SELEX - 50193462 50193475 1.0E-06 GACCCCCCACGTGG 14 Zfx_MA0146.1 JASPAR + 50188607 50188620 1.0E-06 CGGGCCGGGGCCTG 14 V_MTF1_01_M01242 TRANSFAC - 50188370 50188389 5.0E-06 GTGTGCAGCCTTCTCCTGCC 20 V_TGIF_01_M00418 TRANSFAC - 50190784 50190794 2.0E-06 AGCTGTCAGGA 11 V_E2A_Q6_01_M02088 TRANSFAC + 50192014 50192026 4.0E-06 CGCCACCTGCTGA 13 V_MYOD_Q6_M00184 TRANSFAC - 50192352 50192361 7.0E-06 TCCACCTGTC 10 V_OSF2_Q6_M00731 TRANSFAC - 50188263 50188270 1.0E-05 ACCACAAA 8 V_AREB6_03_M00414 TRANSFAC - 50195514 50195525 7.0E-06 GTGCACCTGGGA 12 V_RHOX11_01_M01347 TRANSFAC - 50193568 50193584 1.0E-06 ACTCTGCTGTAAAAGCA 17 V_MTF1_Q4_M00650 TRANSFAC + 50189273 50189286 3.0E-06 TCTGCACACACCCC 14 V_GABP_B_M00341 TRANSFAC - 50195786 50195797 1.0E-06 ACAGGAAGTGCA 12 V_SP1_Q6_01_M00931 TRANSFAC + 50192365 50192374 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 50192423 50192432 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC - 50192438 50192448 4.0E-06 ACATTTGCATA 11 V_EGR_Q6_M00807 TRANSFAC - 50195563 50195573 1.0E-05 GTGGGGGCAGG 11 V_TBR2_01_M01774 TRANSFAC + 50195473 50195481 1.0E-05 AAGTGTGAA 9 V_OCT1_01_M00135 TRANSFAC + 50192433 50192451 3.0E-06 TGCGCTATGCAAATGTCGC 19 V_NKX25_Q6_M02108 TRANSFAC - 50195469 50195479 7.0E-06 CACACTTGCAG 11 V_POU2F3_01_M01476 TRANSFAC + 50192435 50192450 9.0E-06 CGCTATGCAAATGTCG 16 V_AP4_Q6_M00176 TRANSFAC + 50195494 50195503 8.0E-06 CACAGCTGTT 10 V_GLI1_01_M01702 TRANSFAC - 50193465 50193475 7.0E-06 GACCCCCCACG 11 V_SP1_03_M02281 TRANSFAC - 50192364 50192373 7.0E-06 CCCCGCCCCC 10 V_OCT_C_M00210 TRANSFAC - 50192437 50192449 9.0E-06 GACATTTGCATAG 13 V_RHOX11_02_M01384 TRANSFAC - 50193568 50193584 1.0E-06 ACTCTGCTGTAAAAGCA 17 V_BARBIE_01_M00238 TRANSFAC - 50188325 50188339 2.0E-06 ATCAAAAGCTGGAAT 15 V_PR_Q2_M00960 TRANSFAC + 50195731 50195740 3.0E-06 GAGAGAACAT 10 V_STAF_01_M00262 TRANSFAC - 50189429 50189450 2.0E-06 ACCACCCAGGATGCCCTGTGGC 22 V_E2F1_01_M01250 TRANSFAC + 50194733 50194740 1.0E-05 CGTTTCTT 8 V_E12_Q6_M00693 TRANSFAC - 50192014 50192024 6.0E-06 AGCAGGTGGCG 11 V_KROX_Q6_M00982 TRANSFAC - 50192359 50192372 0.0E+00 CCCGCCCCCGCTCC 14 V_TBX5_02_M01020 TRANSFAC + 50194381 50194390 6.0E-06 TGAGGTGTTG 10 V_SP1_Q6_M00196 TRANSFAC + 50192363 50192375 2.0E-06 CGGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 50192421 50192433 5.0E-06 GCGGGGCGGGGCT 13 V_E47_02_M00071 TRANSFAC + 50195491 50195506 6.0E-06 ATCCACAGCTGTTATC 16 V_AP2BETA_Q3_M01858 TRANSFAC + 50192710 50192725 6.0E-06 GCGCCGGCCAGGGGGC 16 V_EGR1_Q6_M01873 TRANSFAC + 50192362 50192371 4.0E-06 GCGGGGGCGG 10 V_ZBTB7B_03_M02826 TRANSFAC + 50188647 50188661 8.0E-06 GTTCCCCCCTAAGAC 15 V_SREBP_Q6_M01168 TRANSFAC + 50192731 50192745 7.0E-06 CAGCCCACCCCAGGG 15 V_REST_01_M01256 TRANSFAC - 50192631 50192652 8.0E-06 GCGCTGCGCTCTCCTGGCTGCT 22 V_AP4_Q5_M00175 TRANSFAC + 50195494 50195503 8.0E-06 CACAGCTGTT 10 V_CETS1P54_01_M00032 TRANSFAC - 50195788 50195797 9.0E-06 ACAGGAAGTG 10 V_TCF1_07_M02919 TRANSFAC + 50193586 50193599 2.0E-06 CTGCCTGGATTAGG 14 V_PPARA_02_M00518 TRANSFAC + 50194372 50194390 4.0E-06 CCTGGTCCTTGAGGTGTTG 19 V_SP3_Q3_M00665 TRANSFAC + 50188658 50188671 1.0E-06 AGACTAGGGCAGGG 14 V_SOX11_03_M02795 TRANSFAC - 50194733 50194749 1.0E-05 GCTTGAACAAAGAAACG 17 V_MZF1_02_M00084 TRANSFAC + 50194390 50194402 6.0E-06 GGGGGATGGGGAA 13 V_OCT1_B_M00342 TRANSFAC + 50192438 50192447 2.0E-06 TATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC - 50192438 50192448 2.0E-06 ACATTTGCATA 11 V_SOX17_04_M02904 TRANSFAC + 50195733 50195749 9.0E-06 GAGAACATTCACACAGA 17 V_GATA4_Q3_M00632 TRANSFAC - 50194846 50194857 4.0E-06 AGAAAGCAGAGA 12 V_TFIII_Q6_M00706 TRANSFAC - 50194764 50194772 6.0E-06 AGAGGGAGG 9 V_TFIII_Q6_M00706 TRANSFAC - 50194775 50194783 6.0E-06 AGAGGGAGG 9 V_ZNF515_01_M01231 TRANSFAC + 50193466 50193475 4.0E-06 GTGGGGGGTC 10 V_SP4_Q5_M01273 TRANSFAC - 50192364 50192374 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 50192422 50192432 2.0E-06 GCCCCGCCCCG 11 V_GABPBETA_Q3_M01876 TRANSFAC - 50195787 50195797 1.0E-06 ACAGGAAGTGC 11 V_TAL1_01_M01591 TRANSFAC + 50194840 50194852 2.0E-06 CCTCCTTCTCTGC 13 V_OCT2_01_M01368 TRANSFAC + 50192435 50192450 7.0E-06 CGCTATGCAAATGTCG 16 V_E2F6_01_M01252 TRANSFAC + 50194733 50194740 1.0E-05 CGTTTCTT 8 V_RHOX11_05_M03099 TRANSFAC - 50193568 50193584 1.0E-06 ACTCTGCTGTAAAAGCA 17 V_FPM315_01_M01587 TRANSFAC - 50194785 50194796 0.0E+00 GAGGGAGGAGGA 12 V_NRSF_01_M00256 TRANSFAC + 50192628 50192648 5.0E-06 TCCAGCAGCCAGGAGAGCGCA 21 V_TBX15_02_M01264 TRANSFAC + 50195473 50195490 1.0E-06 AAGTGTGAACGTGTGCAT 18 V_REST_02_M02256 TRANSFAC + 50192628 50192648 2.0E-06 TCCAGCAGCCAGGAGAGCGCA 21 V_T3RBETA_Q6_01_M02119 TRANSFAC + 50188310 50188326 6.0E-06 GGGAGAGGCCAGGTCAT 17 V_ZFP281_01_M01597 TRANSFAC + 50194389 50194399 5.0E-06 TGGGGGATGGG 11 V_ZFP281_01_M01597 TRANSFAC + 50195842 50195852 1.0E-05 TGGGGGAGGTG 11 V_MEF3_B_M00319 TRANSFAC - 50188576 50188588 0.0E+00 GGCTCAGGTTTCC 13 V_EGR1_06_M02744 TRANSFAC - 50192359 50192372 4.0E-06 CCCGCCCCCGCTCC 14 V_ZFP281_04_M02831 TRANSFAC - 50194387 50194401 1.0E-06 TCCCCATCCCCCAAC 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194796 50194813 1.0E-06 GGGAGGGAGGCAGGCGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194800 50194817 1.0E-06 GCAAGGGAGGGAGGCAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194804 50194821 6.0E-06 GGGAGCAAGGGAGGGAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194808 50194825 1.0E-06 GGGAGGGAGCAAGGGAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194823 50194840 1.0E-06 GGAAGGAAGGCTGGTGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194827 50194844 0.0E+00 GGAGGGAAGGAAGGCTGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194831 50194848 0.0E+00 AGAAGGAGGGAAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194835 50194852 6.0E-06 GCAGAGAAGGAGGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 50194843 50194860 4.0E-06 GGAAGAAAGCAGAGAAGG 18 V_ZIC1_04_M02835 TRANSFAC + 50192736 50192749 7.0E-06 CACCCCAGGGGAGG 14 V_SP1_Q2_01_M00933 TRANSFAC - 50192364 50192373 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC + 50192363 50192375 3.0E-06 CGGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC + 50192421 50192433 9.0E-06 GCGGGGCGGGGCT 13 V_RNF96_01_M01199 TRANSFAC + 50192726 50192735 7.0E-06 GCCCGCAGCC 10 V_RHOX11_06_M03100 TRANSFAC - 50193568 50193584 1.0E-06 ACTCTGCTGTAAAAGCA 17 V_MTF1_05_M02778 TRANSFAC - 50188379 50188394 8.0E-06 GTTCCGTGTGCAGCCT 16 V_MTF1_05_M02778 TRANSFAC + 50195478 50195493 2.0E-06 TGAACGTGTGCATATC 16 V_SOX9_Q4_M01284 TRANSFAC - 50194735 50194745 9.0E-06 GAACAAAGAAA 11

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