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SEC13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6396 SEC13 homolog (S. cerevisiae) chr3 - 10362225 - 10367855 10362725 Transcription Factor Binding Sites   Download all TFBS in the SEC13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 10364182 10364200 0.0E+00 TCTCCACTAGAGGGCAATA 19 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 10364179 10364187 4.0E-06 GCAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 10364178 10364187 1.0E-06 GCAATAAAAA 10 GABPA_MA0062.2 JASPAR - 10362799 10362809 4.0E-06 CCGGAAGTGAG 11 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 10364178 10364187 0.0E+00 GCAATAAAAA 10 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 10359146 10359161 3.0E-06 GAAGGTCCAGAGGTTA 16 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 10363065 10363077 5.0E-06 AGAAAGGATTAAT 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 10358349 10358365 9.0E-06 TTAAATAAGGCTAAAGA 17 EWSR1-FLI1_MA0149.1 JASPAR + 10361644 10361661 6.0E-06 GAGAGGAAGGGGGGAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 10361648 10361665 2.0E-06 GGAAGGGGGGAGGGAGAG 18 NR2F1_MA0017.1 JASPAR + 10359146 10359159 8.0E-06 TAACCTCTGGACCT 14 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 10364179 10364188 2.0E-06 GGCAATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 10364179 10364187 3.0E-06 GCAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 10364178 10364187 2.0E-06 GCAATAAAAA 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 10364178 10364188 0.0E+00 GGCAATAAAAA 11 OTX2_homeodomain_DBD_monomeric_8_1 SELEX - 10363069 10363076 7.0E-06 TTAATCCT 8 CTCF_C2H2_full_monomeric_17_1 SELEX + 10364183 10364199 3.0E-06 ATTGCCCTCTAGTGGAG 17 NFATC1_NFAT_full_dimeric_15_1 SELEX - 10363985 10363999 8.0E-06 TTTCAGCAGAGGAAA 15 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 10359145 10359159 8.0E-06 AGGTCCAGAGGTTAA 15 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 10359145 10359160 3.0E-06 AAGGTCCAGAGGTTAA 16 Gata1_MA0035.2 JASPAR - 10358298 10358308 2.0E-06 AAAGATAAGGA 11 Gata1_MA0035.2 JASPAR - 10358340 10358350 8.0E-06 AAAGATAAGGG 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 10364178 10364187 2.0E-06 GCAATAAAAA 10 IRF9_IRF_full_trimeric_15_1 SELEX - 10358288 10358302 4.0E-06 AAGGAAACTGAAGCT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 10361631 10361645 5.0E-06 AGAAAGGGAGAGGGA 15 FEV_MA0156.1 JASPAR + 10359206 10359213 1.0E-05 CAGGAAAT 8 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 10364178 10364187 2.0E-06 GCAATAAAAA 10 GABPA_ETS_full_monomeric_10_1 SELEX - 10362801 10362810 9.0E-06 GCCGGAAGTG 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 10364178 10364185 4.0E-06 AATAAAAA 8 DMBX1_homeodomain_DBD_monomeric_10_1 SELEX + 10363068 10363077 4.0E-06 AAGGATTAAT 10 IRF3_IRF_full_trimeric_21_1 SELEX - 10358287 10358307 1.0E-06 AAGATAAGGAAACTGAAGCTC 21 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 10359146 10359160 0.0E+00 AAGGTCCAGAGGTTA 15 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 10364178 10364188 0.0E+00 GGCAATAAAAA 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 10364179 10364187 3.0E-06 GCAATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 10364179 10364187 3.0E-06 GCAATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 10364178 10364188 0.0E+00 GGCAATAAAAA 11 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 10359050 10359061 7.0E-06 TGACATGAAACA 12 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 10364178 10364187 4.0E-06 GCAATAAAAA 10 V_HOXA9_01_M01351 TRANSFAC - 10364174 10364190 3.0E-06 AGGGCAATAAAAAATCT 17 V_FOXP1_01_M00987 TRANSFAC - 10363060 10363079 8.0E-06 ATATTAATCCTTTCTTTCAT 20 V_OBOX6_01_M01445 TRANSFAC + 10363064 10363078 3.0E-06 AAGAAAGGATTAATA 15 V_AP2ALPHA_Q6_M01857 TRANSFAC + 10362838 10362848 6.0E-06 AGCCTCCGGGC 11 V_SPI1_01_M01203 TRANSFAC - 10358332 10358348 9.0E-06 AGATAAGGGAACTAAGG 17 V_CDX2_Q5_01_M01659 TRANSFAC + 10363053 10363063 1.0E-06 TCCATAAATGA 11 V_FLI1_Q6_M01208 TRANSFAC - 10362799 10362809 3.0E-06 CCGGAAGTGAG 11 V_OBOX5_05_M03066 TRANSFAC + 10363065 10363081 3.0E-06 AGAAAGGATTAATATAA 17 V_GATA1_Q6_M02004 TRANSFAC - 10358297 10358311 4.0E-06 AATAAAGATAAGGAA 15 V_GATA1_Q6_M02004 TRANSFAC - 10358339 10358353 9.0E-06 TTTAAAGATAAGGGA 15 V_ATF5_01_M01295 TRANSFAC - 10361633 10361643 3.0E-06 CCTCTCCCTTT 11 V_GATA2_02_M00348 TRANSFAC - 10358299 10358308 9.0E-06 AAAGATAAGG 10 V_GATA2_02_M00348 TRANSFAC - 10358341 10358350 9.0E-06 AAAGATAAGG 10 V_FOXA2_04_M02749 TRANSFAC - 10358306 10358322 2.0E-06 TGTTGGTAAATAATAAA 17 V_NKX29_01_M01352 TRANSFAC - 10361716 10361732 9.0E-06 GAAGAAGTACTCTAAGA 17 V_BCL6_01_M01183 TRANSFAC - 10358392 10358407 9.0E-06 TATCTTGTTTAACCTT 16 V_MMEF2_Q6_M00405 TRANSFAC + 10358345 10358360 3.0E-06 ATCTTTAAATAAGGCT 16 V_MEF2_02_M00231 TRANSFAC + 10358340 10358361 7.0E-06 CCCTTATCTTTAAATAAGGCTA 22 V_NFAT3_Q3_M01734 TRANSFAC + 10359125 10359134 6.0E-06 TGTTTTTCCT 10 V_POU3F2_02_M00464 TRANSFAC - 10363072 10363081 2.0E-06 TTATATTAAT 10 V_ATF3_Q6_01_M01863 TRANSFAC + 10359321 10359331 9.0E-06 ATTGAGTCATC 11 V_IRF3_05_M02767 TRANSFAC - 10358293 10358306 9.0E-06 AGATAAGGAAACTG 14 V_GATA_C_M00203 TRANSFAC - 10358296 10358306 3.0E-06 AGATAAGGAAA 11 V_PITX2_Q6_M02114 TRANSFAC + 10363110 10363119 1.0E-06 TGTAATCCCA 10 V_PRX2_Q2_M02115 TRANSFAC - 10363073 10363081 4.0E-06 TTATATTAA 9 V_MEF2A_Q6_M02024 TRANSFAC - 10358346 10358355 4.0E-06 TATTTAAAGA 10 V_AP1_Q6_M00174 TRANSFAC - 10359321 10359331 1.0E-06 GATGACTCAAT 11 V_OBOX5_02_M01480 TRANSFAC + 10363065 10363081 3.0E-06 AGAAAGGATTAATATAA 17 V_MTERF_01_M01245 TRANSFAC - 10362722 10362735 5.0E-06 TGGTGAGTGTTGGT 14 V_CEBPE_Q6_M01868 TRANSFAC + 10358260 10358273 9.0E-06 CAAACTTTGAAAAC 14 V_HOXB13_01_M01467 TRANSFAC - 10364175 10364190 2.0E-06 AGGGCAATAAAAAATC 16 V_COUP_01_M00158 TRANSFAC + 10359146 10359159 8.0E-06 TAACCTCTGGACCT 14 V_ZBP89_Q4_M01816 TRANSFAC - 10361575 10361584 6.0E-06 TCCTCCCCCC 10 V_CEBPD_Q6_M00621 TRANSFAC - 10364193 10364204 8.0E-06 AATTTCTCCACT 12 V_AMEF2_Q6_M00403 TRANSFAC + 10358345 10358362 1.0E-06 ATCTTTAAATAAGGCTAA 18 V_AP1_Q6_01_M00925 TRANSFAC - 10359322 10359330 2.0E-06 ATGACTCAA 9 V_HOXB9_01_M01426 TRANSFAC - 10364175 10364190 1.0E-06 AGGGCAATAAAAAATC 16 V_ER81_02_M02065 TRANSFAC - 10362801 10362810 1.0E-05 GCCGGAAGTG 10 V_SP1_Q6_M00196 TRANSFAC - 10362896 10362908 9.0E-06 GGAGGGCGGGGCG 13 V_CDX2_01_M01449 TRANSFAC - 10364176 10364191 1.0E-06 GAGGGCAATAAAAAAT 16 V_IRF_Q6_M00772 TRANSFAC - 10363056 10363070 6.0E-06 CTTTCTTTCATTTAT 15 V_STAT5A_02_M00460 TRANSFAC + 10361715 10361738 3.0E-06 TTCTTAGAGTACTTCTTCCCAGGG 24 V_HNF1_Q6_01_M01011 TRANSFAC - 10358301 10358321 4.0E-06 GTTGGTAAATAATAAAGATAA 21 V_ZBTB7B_03_M02826 TRANSFAC + 10362595 10362609 0.0E+00 GAGCCCCCCAAATCT 15 V_GADP_01_M01258 TRANSFAC + 10362801 10362812 0.0E+00 CACTTCCGGCGC 12 V_CDX1_01_M01373 TRANSFAC - 10364176 10364191 3.0E-06 GAGGGCAATAAAAAAT 16 V_TEL2_Q6_M00678 TRANSFAC + 10362800 10362809 9.0E-06 TCACTTCCGG 10 V_ZIC3_05_M02941 TRANSFAC - 10358248 10358262 1.0E-06 TTGCACAGCAGGTAA 15 V_GATA1_09_M02254 TRANSFAC - 10358298 10358308 2.0E-06 AAAGATAAGGA 11 V_GATA1_09_M02254 TRANSFAC - 10358340 10358350 8.0E-06 AAAGATAAGGG 11 V_MEF2_Q6_01_M00941 TRANSFAC - 10363072 10363083 3.0E-06 AGTTATATTAAT 12 V_CDC5_01_M00478 TRANSFAC + 10363070 10363081 9.0E-06 GGATTAATATAA 12 V_HB24_01_M01399 TRANSFAC - 10358344 10358358 1.0E-05 CCTTATTTAAAGATA 15 V_CTCF_02_M01259 TRANSFAC - 10364184 10364203 0.0E+00 ATTTCTCCACTAGAGGGCAA 20 V_CTCF_01_M01200 TRANSFAC - 10364182 10364201 4.0E-06 TTCTCCACTAGAGGGCAATA 20 V_MAF_Q6_01_M00983 TRANSFAC + 10359320 10359330 8.0E-06 TATTGAGTCAT 11 V_TFIII_Q6_M00706 TRANSFAC + 10361613 10361621 6.0E-06 AGAGGGAGG 9 V_NEUROD_02_M01288 TRANSFAC + 10358249 10358260 6.0E-06 TACCTGCTGTGC 12 V_OTX2_Q3_M01719 TRANSFAC + 10363066 10363078 4.0E-06 GAAAGGATTAATA 13 V_AP1_Q4_01_M00926 TRANSFAC + 10359323 10359330 1.0E-05 TGAGTCAT 8 V_ZIC2_05_M02940 TRANSFAC - 10358248 10358262 1.0E-06 TTGCACAGCAGGTAA 15 V_TAL1_01_M01591 TRANSFAC + 10358296 10358308 0.0E+00 TTTCCTTATCTTT 13 V_TAL1_01_M01591 TRANSFAC + 10358338 10358350 4.0E-06 TTCCCTTATCTTT 13 V_TAL1_01_M01591 TRANSFAC - 10361604 10361616 4.0E-06 CTCTCTTCTCTCT 13 V_NKX3A_02_M01383 TRANSFAC - 10361716 10361732 4.0E-06 GAAGAAGTACTCTAAGA 17 V_PITX1_01_M01484 TRANSFAC + 10363064 10363080 5.0E-06 AAGAAAGGATTAATATA 17 V_GATA6_01_M00462 TRANSFAC - 10358299 10358308 3.0E-06 AAAGATAAGG 10 V_GATA6_01_M00462 TRANSFAC - 10358341 10358350 3.0E-06 AAAGATAAGG 10 V_FRA1_Q5_M01267 TRANSFAC + 10359323 10359330 1.0E-05 TGAGTCAT 8 V_DOBOX5_01_M01463 TRANSFAC + 10363065 10363081 0.0E+00 AGAAAGGATTAATATAA 17 V_VDR_Q6_M00961 TRANSFAC - 10359232 10359243 1.0E-06 CCCTTTGAACCA 12 V_OTX2_01_M01387 TRANSFAC + 10363065 10363081 0.0E+00 AGAAAGGATTAATATAA 17 V_TCF4_Q5_M00671 TRANSFAC - 10359235 10359242 1.0E-05 CCTTTGAA 8 V_PITX2_Q2_M00482 TRANSFAC + 10363110 10363120 1.0E-06 TGTAATCCCAG 11 V_DMRT2_01_M01147 TRANSFAC - 10363065 10363080 5.0E-06 TATATTAATCCTTTCT 16 V_EWSR1FLI1_01_M02252 TRANSFAC + 10361644 10361661 6.0E-06 GAGAGGAAGGGGGGAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 10361648 10361665 2.0E-06 GGAAGGGGGGAGGGAGAG 18 V_VDR_Q3_M00444 TRANSFAC + 10361586 10361600 7.0E-06 GAGGGAGCGGGGAGA 15 V_VDR_Q3_M00444 TRANSFAC + 10361663 10361677 4.0E-06 GAGGGAGTGGGGAGA 15 V_GSC_01_M01428 TRANSFAC - 10363065 10363081 5.0E-06 TTATATTAATCCTTTCT 17 V_PITX2_01_M01447 TRANSFAC + 10363065 10363081 0.0E+00 AGAAAGGATTAATATAA 17 V_MEF2A_05_M01301 TRANSFAC - 10363072 10363083 3.0E-06 AGTTATATTAAT 12 V_GATA5_03_M02756 TRANSFAC - 10358295 10358311 4.0E-06 AATAAAGATAAGGAAAC 17 V_SOX5_07_M02909 TRANSFAC + 10364196 10364212 2.0E-06 GGAGAAATTGTTGCAGG 17 V_GATA1_02_M00126 TRANSFAC - 10358297 10358310 6.0E-06 ATAAAGATAAGGAA 14 V_GATA1_02_M00126 TRANSFAC - 10358339 10358352 0.0E+00 TTAAAGATAAGGGA 14 V_GATA6_04_M02757 TRANSFAC - 10358295 10358311 1.0E-06 AATAAAGATAAGGAAAC 17 V_GATA6_04_M02757 TRANSFAC - 10358337 10358353 6.0E-06 TTTAAAGATAAGGGAAC 17 V_SP1_Q4_01_M00932 TRANSFAC - 10362896 10362908 9.0E-06 GGAGGGCGGGGCG 13 V_HOXD10_01_M01375 TRANSFAC - 10364174 10364190 1.0E-06 AGGGCAATAAAAAATCT 17 V_TAACC_B_M00331 TRANSFAC - 10359262 10359284 2.0E-06 CAGAGCCCAGTCAAACCACCAAG 23 V_TCF11MAFG_01_M00284 TRANSFAC - 10359314 10359335 9.0E-06 GAAAGATGACTCAATACAAAGG 22 V_OBOX5_01_M01381 TRANSFAC + 10363065 10363081 1.0E-06 AGAAAGGATTAATATAA 17 V_OBOX6_02_M03068 TRANSFAC + 10363064 10363078 3.0E-06 AAGAAAGGATTAATA 15 V_TCF3_05_M02920 TRANSFAC - 10364176 10364190 0.0E+00 AGGGCAATAAAAAAT 15 V_FEV_01_M02269 TRANSFAC + 10359206 10359213 1.0E-05 CAGGAAAT 8 V_OTX1_01_M01366 TRANSFAC + 10363065 10363081 0.0E+00 AGAAAGGATTAATATAA 17 V_OBOX6_06_M03067 TRANSFAC - 10363065 10363081 1.0E-06 TTATATTAATCCTTTCT 17 V_FOXK1_03_M02752 TRANSFAC - 10358306 10358322 8.0E-06 TGTTGGTAAATAATAAA 17 V_FOXK1_03_M02752 TRANSFAC - 10359190 10359206 8.0E-06 GAGAGGTAAACACAAGG 17 V_RFX1_02_M00281 TRANSFAC - 10362962 10362979 1.0E-05 GGGTAACTGCGGCAACCA 18 V_ZIC1_05_M02939 TRANSFAC - 10358248 10358262 1.0E-06 TTGCACAGCAGGTAA 15 V_OTX3_01_M01403 TRANSFAC + 10363064 10363080 0.0E+00 AAGAAAGGATTAATATA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.