Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCDC90A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 63933 mitochondrial calcium uniporter regulator 1 chr6 - 13814292 - 13819792 13814792 Transcription Factor Binding Sites   Download all TFBS in the CCDC90A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 13813451 13813461 1.0E-06 AATGACTCATT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 13813451 13813461 2.0E-06 AATGAGTCATT 11 Sox17_MA0078.1 JASPAR + 13818717 13818725 7.0E-06 CTCATTGTC 9 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 13811588 13811605 1.0E-06 GTCATTACAGTTCAATTA 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 13814998 13815015 3.0E-06 GTCCTTAAAAAGGAATTA 18 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 13818705 13818720 1.0E-06 AAAGGTCAAGGGCTCA 16 SPIC_ETS_full_monomeric_14_1 SELEX - 13811670 13811683 7.0E-06 TGAAAAGGGAAGAA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 13811588 13811604 4.0E-06 TCATTACAGTTCAATTA 17 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 13814999 13815015 0.0E+00 TCCTTAAAAAGGAATTA 17 SRY_HMG_DBD_dimeric_13_2 SELEX + 13811651 13811663 8.0E-06 TGAATTCCTTTCT 13 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 13818704 13818716 1.0E-06 GAAAGGTCAAGGG 13 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 13814464 13814473 6.0E-06 GGCACGTGAC 10 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 13811592 13811608 2.0E-06 GAAGTCATTACAGTTCA 17 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 13811592 13811609 7.0E-06 AGAAGTCATTACAGTTCA 18 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 13818706 13818723 4.0E-06 AAGGTCAAGGGCTCATTG 18 POU3F4_POU_DBD_monomeric_9_1 SELEX - 13814975 13814983 7.0E-06 AATGCAAAT 9 RUNX3_RUNX_full_monomeric_10_1 SELEX + 13815686 13815695 7.0E-06 AAACCGCAAC 10 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 13811153 13811162 5.0E-06 GTCATAAATA 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 13815686 13815694 3.0E-06 AAACCGCAA 9 SOX8_HMG_full_dimeric_13_1 SELEX + 13811650 13811662 6.0E-06 ATGAATTCCTTTC 13 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 13811592 13811608 8.0E-06 GAAGTCATTACAGTTCA 17 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 13814464 13814473 5.0E-06 GGCACGTGAC 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 13814976 13814989 5.0E-06 AGTGAAAATGCAAA 14 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 13814464 13814473 8.0E-06 GGCACGTGAC 10 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 13811153 13811163 7.0E-06 GGTCATAAATA 11 SP1_C2H2_DBD_monomeric_11_1 SELEX - 13814824 13814834 7.0E-06 ACCCCACCCCC 11 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 13818706 13818721 3.0E-06 AAGGTCAAGGGCTCAT 16 Gata1_MA0035.2 JASPAR - 13811521 13811531 5.0E-06 AAAGATAAAAA 11 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 13811588 13811605 0.0E+00 GTCATTACAGTTCAATTA 18 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 13814998 13815015 2.0E-06 GTCCTTAAAAAGGAATTA 18 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 13813450 13813462 5.0E-06 TAATGACTCATTT 13 FEV_MA0156.1 JASPAR - 13811208 13811215 1.0E-05 CAGGAAAT 8 JDP2_bZIP_full_dimeric_9_1 SELEX + 13813452 13813460 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 13813452 13813460 4.0E-06 ATGAGTCAT 9 POU2F1_POU_DBD_monomeric_12_1 SELEX - 13814974 13814985 6.0E-06 AAAATGCAAATC 12 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 13811153 13811162 8.0E-06 GTCATAAATA 10 ETV6_ETS_full_dimeric_15_1 SELEX + 13814944 13814958 2.0E-06 CCGGAACTGGAAGGA 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 13811223 13811234 1.0E-05 ATGCTTAAGCAT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 13811223 13811234 1.0E-05 ATGCTTAAGCAT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 13811588 13811605 1.0E-06 GTCATTACAGTTCAATTA 18 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 13814998 13815015 3.0E-06 GTCCTTAAAAAGGAATTA 18 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 13814464 13814473 4.0E-06 GGCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 13814464 13814473 6.0E-06 GGCACGTGAC 10 RREB1_MA0073.1 JASPAR - 13814824 13814843 7.0E-06 CCCCGCCCCACCCCACCCCC 20 V_KLF15_Q2_M01714 TRANSFAC - 13813981 13813994 6.0E-06 GGGGCGGGGAGTTG 14 V_AP1_Q2_M00173 TRANSFAC + 13813451 13813461 6.0E-06 AATGACTCATT 11 V_ZSCAN4_03_M02838 TRANSFAC - 13815491 13815507 6.0E-06 TATGTGTACACATATGG 17 V_ZSCAN4_03_M02838 TRANSFAC + 13815492 13815508 3.0E-06 CATATGTGTACACATAC 17 V_ZSCAN4_03_M02838 TRANSFAC - 13815493 13815509 9.0E-06 CGTATGTGTACACATAT 17 V_ZSCAN4_03_M02838 TRANSFAC + 13815494 13815510 9.0E-06 TATGTGTACACATACGT 17 V_CDX2_Q5_01_M01659 TRANSFAC - 13811152 13811162 5.0E-06 GTCATAAATAG 11 V_AR_02_M00953 TRANSFAC + 13815441 13815467 8.0E-06 AACCGCAAAACAAATTGTTCTTATCCT 27 V_GATA1_Q6_M02004 TRANSFAC - 13811520 13811534 7.0E-06 GCTAAAGATAAAAAA 15 V_GATA2_02_M00348 TRANSFAC - 13811522 13811531 8.0E-06 AAAGATAAAA 10 V_FOXA2_04_M02749 TRANSFAC + 13818803 13818819 7.0E-06 TACTAGTAAACACTGAT 17 V_BCL6B_03_M02740 TRANSFAC + 13811183 13811198 1.0E-05 TCTTTCTAGCAACCTA 16 V_EVI1_04_M00081 TRANSFAC - 13811571 13811585 6.0E-06 AAAAAAAAAAAATTA 15 V_FOXD3_01_M00130 TRANSFAC + 13811572 13811583 9.0E-06 AATTTTTTTTTT 12 V_GM397_03_M02760 TRANSFAC + 13815492 13815508 4.0E-06 CATATGTGTACACATAC 17 V_GM397_03_M02760 TRANSFAC - 13815493 13815509 6.0E-06 CGTATGTGTACACATAT 17 V_GM397_03_M02760 TRANSFAC + 13815494 13815510 2.0E-06 TATGTGTACACATACGT 17 V_ETS_B_M00340 TRANSFAC + 13814253 13814266 4.0E-06 TGCAGGAAACGAGT 14 V_GATA3_03_M00351 TRANSFAC - 13811522 13811531 4.0E-06 AAAGATAAAA 10 V_PROP1_01_M01294 TRANSFAC + 13811571 13811581 5.0E-06 TAATTTTTTTT 11 V_SP1_Q6_01_M00931 TRANSFAC + 13814835 13814844 4.0E-06 GGGGCGGGGC 10 V_DR4_Q2_M00965 TRANSFAC + 13811592 13811608 6.0E-06 TGAACTGTAATGACTTC 17 V_NR2F2_03_M02783 TRANSFAC + 13818701 13818716 3.0E-06 ACAGAAAGGTCAAGGG 16 V_ISL2_01_M01328 TRANSFAC - 13815116 13815131 1.0E-06 AATAATTCCTTAAAAT 16 V_IRF_Q6_01_M00972 TRANSFAC + 13815610 13815620 7.0E-06 AGAACTGAAAA 11 V_MEIS1AHOXA9_01_M00420 TRANSFAC + 13815535 13815548 8.0E-06 TGAGAGATGTACAA 14 V_GCNF_Q3_M02009 TRANSFAC + 13818705 13818714 6.0E-06 AAAGGTCAAG 10 V_OCT1_01_M00135 TRANSFAC - 13814970 13814988 8.0E-06 GTGAAAATGCAAATCGTGA 19 V_IRF3_05_M02767 TRANSFAC + 13815684 13815697 7.0E-06 AAAAACCGCAACTA 14 V_GATA_C_M00203 TRANSFAC - 13811519 13811529 7.0E-06 AGATAAAAAAT 11 V_TR4_Q2_M01725 TRANSFAC - 13818704 13818714 3.0E-06 CTTGACCTTTC 11 V_SP1_02_M01303 TRANSFAC - 13813984 13813994 3.0E-06 GGGGCGGGGAG 11 V_SP1_02_M01303 TRANSFAC + 13814825 13814835 5.0E-06 GGGGTGGGGTG 11 V_TCFAP2E_04_M02926 TRANSFAC - 13811572 13811585 4.0E-06 AAAAAAAAAAAATT 14 V_TCFAP2E_04_M02926 TRANSFAC - 13811573 13811586 6.0E-06 CAAAAAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 13811575 13811588 2.0E-06 ACCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 13811576 13811589 0.0E+00 TACCAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 13811577 13811590 4.0E-06 TTACCAAAAAAAAA 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 13815575 13815592 4.0E-06 ATGGATGTGCAAGATAAG 18 V_AP1_Q6_M00174 TRANSFAC + 13813451 13813461 0.0E+00 AATGACTCATT 11 V_ELF4_04_M02850 TRANSFAC - 13811571 13811587 1.0E-06 CCAAAAAAAAAAAATTA 17 V_ELF4_04_M02850 TRANSFAC - 13811572 13811588 2.0E-06 ACCAAAAAAAAAAAATT 17 V_ELF4_04_M02850 TRANSFAC - 13811573 13811589 2.0E-06 TACCAAAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC - 13811574 13811590 1.0E-06 TTACCAAAAAAAAAAAA 17 V_BACH1_01_M00495 TRANSFAC - 13813449 13813463 3.0E-06 GAAATGAGTCATTAG 15 V_SOX13_03_M02797 TRANSFAC + 13811564 13811579 3.0E-06 CTAGGAATAATTTTTT 16 V_SOX13_03_M02797 TRANSFAC - 13815449 13815464 0.0E+00 ATAAGAACAATTTGTT 16 V_HELIOSA_02_M01004 TRANSFAC - 13815477 13815487 3.0E-06 TATAGGAAAAC 11 V_ZFP105_03_M02827 TRANSFAC - 13811570 13811584 2.0E-06 AAAAAAAAAAATTAT 15 V_ZFP105_03_M02827 TRANSFAC - 13811571 13811585 0.0E+00 AAAAAAAAAAAATTA 15 V_ZFP105_03_M02827 TRANSFAC - 13811572 13811586 4.0E-06 CAAAAAAAAAAAATT 15 V_ZFP105_03_M02827 TRANSFAC - 13811574 13811588 0.0E+00 ACCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 13811575 13811589 2.0E-06 TACCAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 13811578 13811592 8.0E-06 AATTACCAAAAAAAA 15 V_MYCMAX_02_M00123 TRANSFAC - 13815095 13815106 6.0E-06 AACCACATGTTT 12 V_NFAT_Q6_M00302 TRANSFAC - 13815476 13815487 4.0E-06 TATAGGAAAACA 12 V_NKX31_02_M02782 TRANSFAC - 13812470 13812486 1.0E-06 TTGAGCTACTTAAGGAT 17 V_NKX26_01_M01322 TRANSFAC - 13812470 13812485 8.0E-06 TGAGCTACTTAAGGAT 16 V_HIC1_03_M01073 TRANSFAC - 13814930 13814947 2.0E-06 CCGGAGTGCCCGCAGGCT 18 V_RSRFC4_Q2_M00407 TRANSFAC - 13811520 13811536 6.0E-06 ATGCTAAAGATAAAAAA 17 V_AP1_Q6_01_M00925 TRANSFAC + 13813452 13813460 4.0E-06 ATGACTCAT 9 V_AP1_Q4_M00188 TRANSFAC + 13813451 13813461 8.0E-06 AATGACTCATT 11 V_MAZ_Q6_01_M02023 TRANSFAC + 13814824 13814837 4.0E-06 GGGGGTGGGGTGGG 14 V_HNF1_Q6_01_M01011 TRANSFAC - 13811518 13811538 6.0E-06 AGATGCTAAAGATAAAAAATG 21 V_MEF2_03_M00232 TRANSFAC - 13811519 13811540 2.0E-06 CCAGATGCTAAAGATAAAAAAT 22 V_SFPI1_04_M02896 TRANSFAC + 13815602 13815615 6.0E-06 AAATTTGAAGAACT 14 V_JUNDM2_04_M02876 TRANSFAC + 13813448 13813463 5.0E-06 CCTAATGACTCATTTC 16 V_JUNDM2_04_M02876 TRANSFAC - 13813449 13813464 7.0E-06 AGAAATGAGTCATTAG 16 V_NFE4_Q5_M02105 TRANSFAC + 13814218 13814229 8.0E-06 CCCCCTCTCCTC 12 V_OCT1_04_M00138 TRANSFAC - 13814968 13814990 5.0E-06 CAGTGAAAATGCAAATCGTGACA 23 V_OCT1_04_M00138 TRANSFAC + 13815590 13815612 1.0E-05 AAGTGTCTATCAAAATTTGAAGA 23 V_OCT1_04_M00138 TRANSFAC - 13815597 13815619 1.0E-05 TTTCAGTTCTTCAAATTTTGATA 23 Tal1_Gata1_MA0140.1 JASPAR + 13815575 13815592 4.0E-06 ATGGATGTGCAAGATAAG 18 V_MEF2_04_M00233 TRANSFAC - 13811519 13811540 1.0E-06 CCAGATGCTAAAGATAAAAAAT 22 V_MEF2_04_M00233 TRANSFAC - 13811573 13811594 3.0E-06 TCAATTACCAAAAAAAAAAAAT 22 V_GATA1_09_M02254 TRANSFAC - 13811521 13811531 5.0E-06 AAAGATAAAAA 11 V_RREB1_01_M00257 TRANSFAC - 13814825 13814838 1.0E-06 CCCCACCCCACCCC 14 V_AP1_C_M00199 TRANSFAC - 13813452 13813460 8.0E-06 ATGAGTCAT 9 V_OCAB_Q6_M02113 TRANSFAC - 13814974 13814984 0.0E+00 AAATGCAAATC 11 V_TCF1_07_M02919 TRANSFAC + 13811611 13811624 7.0E-06 CAATCTGGATTATG 14 V_POU6F1_01_M00465 TRANSFAC - 13811570 13811580 9.0E-06 AAAAAAATTAT 11 V_AP1_01_M00517 TRANSFAC - 13813450 13813462 5.0E-06 AAATGAGTCATTA 13 V_STAT3_03_M01595 TRANSFAC + 13815549 13815564 7.0E-06 AGTGCTGGGAAGAGAG 16 V_NR1B1_Q6_M02110 TRANSFAC + 13818705 13818714 3.0E-06 AAAGGTCAAG 10 V_OCT1_B_M00342 TRANSFAC - 13814974 13814983 2.0E-06 AATGCAAATC 10 V_OCT_Q6_M00795 TRANSFAC + 13814973 13814983 1.0E-05 CGATTTGCATT 11 V_KAISO_01_M01119 TRANSFAC - 13814439 13814448 9.0E-06 CTCCTGCTAG 10 V_GATA4_Q3_M00632 TRANSFAC - 13811695 13811706 1.0E-05 AGATTTAAGTGA 12 V_USF_Q6_01_M00796 TRANSFAC + 13814463 13814474 8.0E-06 AGGCACGTGACA 12 V_GCNF_01_M00526 TRANSFAC + 13818703 13818720 5.0E-06 AGAAAGGTCAAGGGCTCA 18 V_AP1_Q4_01_M00926 TRANSFAC - 13813452 13813459 1.0E-05 TGAGTCAT 8 V_SOX15_03_M02799 TRANSFAC - 13815448 13815464 0.0E+00 ATAAGAACAATTTGTTT 17 V_MTF1_06_M02882 TRANSFAC - 13811518 13811531 5.0E-06 AAAGATAAAAAATG 14 V_MTF1_06_M02882 TRANSFAC - 13811579 13811592 5.0E-06 AATTACCAAAAAAA 14 V_HAND1E47_01_M00222 TRANSFAC + 13811529 13811544 1.0E-05 TTTAGCATCTGGCAAG 16 V_FAC1_01_M00456 TRANSFAC - 13811575 13811588 7.0E-06 ACCAAAAAAAAAAA 14 V_CEBPA_01_M00116 TRANSFAC - 13811580 13811593 7.0E-06 CAATTACCAAAAAA 14 V_SMAD4_04_M02898 TRANSFAC + 13814055 13814071 2.0E-06 TAAGCCCCGCCACCGCG 17 V_ZBTB3_03_M02825 TRANSFAC + 13814981 13814997 1.0E-06 ATTTTCACTGCACTGCT 17 V_OCT1_Q6_M00195 TRANSFAC - 13814972 13814986 1.0E-06 GAAAATGCAAATCGT 15 V_GATA3_02_M00350 TRANSFAC - 13811522 13811531 3.0E-06 AAAGATAAAA 10 V_MYCMAX_B_M00322 TRANSFAC + 13814717 13814726 3.0E-06 GCCACGCGCG 10 V_MEIS1_01_M00419 TRANSFAC + 13811112 13811123 9.0E-06 CTATGACAGGAG 12 V_TFIIA_Q6_M00707 TRANSFAC - 13815149 13815160 8.0E-06 TATGTGAGGGCC 12 V_GATA6_01_M00462 TRANSFAC - 13811522 13811531 3.0E-06 AAAGATAAAA 10 V_FRA1_Q5_M01267 TRANSFAC - 13813452 13813459 1.0E-05 TGAGTCAT 8 V_ETS1_B_M00339 TRANSFAC + 13814254 13814268 6.0E-06 GCAGGAAACGAGTGC 15 V_SOX21_04_M02907 TRANSFAC + 13815449 13815465 1.0E-06 AACAAATTGTTCTTATC 17 V_SOX8_03_M02808 TRANSFAC + 13815448 13815464 2.0E-06 AAACAAATTGTTCTTAT 17 V_STAT5A_01_M00457 TRANSFAC - 13811207 13811221 7.0E-06 CAATTGCAGGAAATA 15 V_NUR77_Q5_M01217 TRANSFAC - 13818704 13818713 1.0E-06 TTGACCTTTC 10 V_SRF_06_M02916 TRANSFAC - 13811568 13811584 1.0E-05 AAAAAAAAAAATTATTC 17 V_SRF_06_M02916 TRANSFAC - 13811570 13811586 0.0E+00 CAAAAAAAAAAAATTAT 17 V_SRF_06_M02916 TRANSFAC - 13811571 13811587 0.0E+00 CCAAAAAAAAAAAATTA 17 V_SRF_06_M02916 TRANSFAC - 13811572 13811588 1.0E-06 ACCAAAAAAAAAAAATT 17 V_SRF_06_M02916 TRANSFAC - 13811573 13811589 9.0E-06 TACCAAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC - 13811574 13811590 3.0E-06 TTACCAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 13811575 13811591 8.0E-06 ATTACCAAAAAAAAAAA 17 V_SIX6_01_M01345 TRANSFAC - 13818789 13818805 1.0E-05 GTAAGAGTATCAGTATG 17 V_ERR1_Q2_01_M02093 TRANSFAC + 13818705 13818715 6.0E-06 AAAGGTCAAGG 11 V_NFE2_Q6_M02104 TRANSFAC + 13813451 13813466 8.0E-06 AATGACTCATTTCTCA 16 V_PR_02_M00957 TRANSFAC + 13815441 13815467 9.0E-06 AACCGCAAAACAAATTGTTCTTATCCT 27 V_SOX12_03_M02796 TRANSFAC + 13815452 13815465 1.0E-06 AAATTGTTCTTATC 14 V_HOXD3_01_M01338 TRANSFAC + 13811582 13811597 4.0E-06 TTTTGGTAATTGAACT 16 V_ARP1_01_M00155 TRANSFAC - 13818705 13818720 0.0E+00 TGAGCCCTTGACCTTT 16 V_HOXA10_01_M01464 TRANSFAC - 13811150 13811165 4.0E-06 GTGGTCATAAATAGCA 16 V_SOX5_07_M02909 TRANSFAC - 13811564 13811580 8.0E-06 AAAAAAATTATTCCTAG 17 V_SOX5_07_M02909 TRANSFAC + 13815448 13815464 5.0E-06 AAACAAATTGTTCTTAT 17 V_SOX5_04_M02910 TRANSFAC - 13811613 13811627 3.0E-06 TTTCATAATCCAGAT 15 V_TCF3_05_M02920 TRANSFAC - 13811574 13811588 3.0E-06 ACCAAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 13811575 13811589 0.0E+00 TACCAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 13811576 13811590 7.0E-06 TTACCAAAAAAAAAA 15 V_FEV_01_M02269 TRANSFAC - 13811208 13811215 1.0E-05 CAGGAAAT 8 V_RORA2_01_M00157 TRANSFAC + 13812474 13812486 8.0E-06 TTAAGTAGCTCAA 13 V_GATA1_06_M00347 TRANSFAC - 13811522 13811531 1.0E-05 AAAGATAAAA 10 V_HOXC9_01_M01416 TRANSFAC - 13811151 13811166 7.0E-06 CGTGGTCATAAATAGC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.