Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6359 chemokine (C-C motif) ligand 15 chr17 - 34328584 - 34334084 34329084 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 34329151 34329159 8.0E-06 GCACTTGAA 9 NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 34329997 34330005 8.0E-06 GCACTTGAA 9 Foxa2_MA0047.2 JASPAR - 34327947 34327958 4.0E-06 TATTTACATTTC 12 NFIA_NFI_full_dimeric_15_1 SELEX + 34329119 34329133 1.0E-06 TTGGAAAAGTGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 34329119 34329133 1.0E-06 TTGGCACTTTTCCAA 15 SOX2_HMG_full_dimeric_17_1 SELEX + 34329329 34329345 9.0E-06 GAACTCTGCCATTTTGC 17 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 34329166 34329176 3.0E-06 TCCAAAGGTCA 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 34327949 34327960 0.0E+00 AATGTAAATAAT 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 34327953 34327965 1.0E-05 AATGTATTATTTA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 34327949 34327959 1.0E-06 AATGTAAATAA 11 Sox1_HMG_DBD_dimeric_13_1 SELEX + 34327972 34327984 0.0E+00 TCAATGTCATTGA 13 Sox1_HMG_DBD_dimeric_13_1 SELEX - 34327972 34327984 0.0E+00 TCAATGACATTGA 13 NR2F1_MA0017.1 JASPAR + 34329166 34329179 3.0E-06 TGACCTTTGGATTG 14 NR2F1_MA0017.1 JASPAR + 34329328 34329341 8.0E-06 TGAACTCTGCCATT 14 SOX14_HMG_DBD_dimeric_13_1 SELEX + 34327972 34327984 0.0E+00 TCAATGTCATTGA 13 SOX14_HMG_DBD_dimeric_13_1 SELEX - 34327972 34327984 0.0E+00 TCAATGACATTGA 13 SOX14_HMG_DBD_dimeric_12_1 SELEX + 34327972 34327983 4.0E-06 TCAATGTCATTG 12 SOX14_HMG_DBD_dimeric_12_1 SELEX - 34327973 34327984 2.0E-06 TCAATGACATTG 12 Mycn_MA0104.2 JASPAR - 34331796 34331805 3.0E-06 ACCACGTGGC 10 POU3F1_POU_DBD_monomeric_12_1 SELEX + 34327948 34327959 4.0E-06 AAATGTAAATAA 12 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 34327971 34327981 8.0E-06 TTCAATGTCAT 11 POU3F1_POU_DBD_monomeric_12_2 SELEX - 34327953 34327964 4.0E-06 ATGTATTATTTA 12 NFIB_NFI_full_dimeric_15_1 SELEX + 34329119 34329133 0.0E+00 TTGGAAAAGTGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 34329119 34329133 1.0E-06 TTGGCACTTTTCCAA 15 SRY_HMG_DBD_dimeric_13_1 SELEX + 34327972 34327984 0.0E+00 TCAATGTCATTGA 13 SRY_HMG_DBD_dimeric_13_1 SELEX - 34327972 34327984 0.0E+00 TCAATGACATTGA 13 FOXB1_forkhead_full_monomeric_9_1 SELEX + 34327951 34327959 4.0E-06 TGTAAATAA 9 NRF1_NRF_full_dimeric_12_1 SELEX + 34329265 34329276 4.0E-06 TACGCATGCTCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 34329265 34329276 1.0E-05 TGAGCATGCGTA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 34327948 34327959 9.0E-06 AAATGTAAATAA 12 Sox1_HMG_DBD_dimeric_15_1 SELEX - 34327971 34327985 7.0E-06 GTCAATGACATTGAA 15 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 34327949 34327959 0.0E+00 AATGTAAATAA 11 TP63_p53l_DBD_dimeric_18_1 SELEX - 34328376 34328393 5.0E-06 GACATGTTGTGACTACTC 18 POU4F1_POU_DBD_monomeric_14_1 SELEX + 34327952 34327965 6.0E-06 GTAAATAATACATT 14 V_NFAT_Q4_01_M00935 TRANSFAC + 34329912 34329921 7.0E-06 CTGGAAAATC 10 V_HNF3B_01_M00131 TRANSFAC - 34327949 34327963 0.0E+00 TGTATTATTTACATT 15 V_TCF3_01_M01594 TRANSFAC - 34331821 34331833 4.0E-06 CTTTTCTTTTTCT 13 V_CDX2_Q5_01_M01659 TRANSFAC - 34328455 34328465 4.0E-06 TTCATAAATGG 11 V_FXR_Q3_M00631 TRANSFAC + 34327973 34327986 6.0E-06 CAATGTCATTGACC 14 V_XFD1_01_M00267 TRANSFAC + 34327949 34327962 0.0E+00 AATGTAAATAATAC 14 V_XFD1_01_M00267 TRANSFAC - 34328610 34328623 5.0E-06 CTTATAAATACAAG 14 V_YY1_02_M00069 TRANSFAC + 34329331 34329350 0.0E+00 ACTCTGCCATTTTGCCTCTT 20 V_FOXA2_04_M02749 TRANSFAC + 34327947 34327963 0.0E+00 GAAATGTAAATAATACA 17 V_NF1_Q6_01_M00806 TRANSFAC + 34329119 34329135 0.0E+00 TTGGAAAAGTGCCAAGC 17 V_NF1A_Q6_M02103 TRANSFAC + 34329119 34329134 5.0E-06 TTGGAAAAGTGCCAAG 16 V_EVI1_04_M00081 TRANSFAC + 34331817 34331831 4.0E-06 AGACAGAAAAAGAAA 15 V_BCL6_01_M01183 TRANSFAC - 34329110 34329125 3.0E-06 TTTCCAAGTGTTCTTT 16 V_HOXA13_02_M01297 TRANSFAC - 34329182 34329190 7.0E-06 ATATAAAAC 9 V_IK_Q5_M01169 TRANSFAC - 34329850 34329859 3.0E-06 TTTGGGAGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC - 34327949 34327959 1.0E-06 TTATTTACATT 11 V_NR2F2_03_M02783 TRANSFAC - 34329162 34329177 3.0E-06 ATCCAAAGGTCAAACC 16 V_IRF_Q6_01_M00972 TRANSFAC + 34331822 34331832 7.0E-06 GAAAAAGAAAA 11 V_NFAT3_Q3_M01734 TRANSFAC - 34329913 34329922 1.0E-05 AGATTTTCCA 10 V_HNF4_Q6_M00967 TRANSFAC - 34329990 34329998 7.0E-06 AAGGTCCAA 9 V_NKX25_Q6_M02108 TRANSFAC + 34329273 34329283 5.0E-06 CTCACTTGAGG 11 V_HNF3_Q6_01_M01012 TRANSFAC - 34327946 34327963 4.0E-06 TGTATTATTTACATTTCC 18 V_TR4_Q2_M01725 TRANSFAC + 34329164 34329174 7.0E-06 TTTGACCTTTG 11 V_E2A_Q2_M00804 TRANSFAC + 34329838 34329851 3.0E-06 CCACCTGCCTCGGC 14 V_PU1_Q4_M01172 TRANSFAC - 34329902 34329920 2.0E-06 ATTTTCCAGTTCTCCATTT 19 V_LYF1_01_M00141 TRANSFAC - 34329851 34329859 9.0E-06 TTTGGGAGG 9 V_CMYC_02_M01154 TRANSFAC - 34331795 34331806 1.0E-06 TACCACGTGGCT 12 V_TCFAP2E_04_M02926 TRANSFAC - 34327965 34327978 1.0E-05 ACATTGAAAAAAGA 14 V_TCFAP2E_04_M02926 TRANSFAC + 34328206 34328219 4.0E-06 TAAGGGAAAAAATC 14 V_MEF2A_Q6_M02024 TRANSFAC - 34328340 34328349 4.0E-06 TATTTAAAAA 10 V_CP2_02_M00947 TRANSFAC - 34329970 34329984 5.0E-06 GGTGGTTAGAACTTG 15 V_BACH1_01_M00495 TRANSFAC + 34329879 34329893 3.0E-06 AGAATGAGTCAAGCT 15 V_LMX1_01_M01409 TRANSFAC - 34328338 34328354 7.0E-06 GAACTTATTTAAAAAGC 17 V_MYCMAX_01_M00118 TRANSFAC + 34331794 34331807 3.0E-06 CAGCCACGTGGTAG 14 V_MYCMAX_01_M00118 TRANSFAC - 34331794 34331807 3.0E-06 CTACCACGTGGCTG 14 V_MYCMAX_02_M00123 TRANSFAC - 34331795 34331806 5.0E-06 TACCACGTGGCT 12 V_COUP_01_M00158 TRANSFAC + 34329166 34329179 3.0E-06 TGACCTTTGGATTG 14 V_COUP_01_M00158 TRANSFAC + 34329328 34329341 8.0E-06 TGAACTCTGCCATT 14 V_CMYC_01_M01145 TRANSFAC + 34331795 34331806 7.0E-06 AGCCACGTGGTA 12 V_TEF_Q6_M00672 TRANSFAC + 34328611 34328622 4.0E-06 TTGTATTTATAA 12 V_NFAT_Q6_M00302 TRANSFAC + 34329910 34329921 8.0E-06 AACTGGAAAATC 12 V_NKX26_01_M01322 TRANSFAC - 34329148 34329163 9.0E-06 CCAGGCACTTGAATCT 16 V_PXRRXR_02_M01153 TRANSFAC - 34329328 34329335 1.0E-05 AGAGTTCA 8 MYC_MAX_MA0059.1 JASPAR + 34331795 34331805 5.0E-06 AGCCACGTGGT 11 MYC_MAX_MA0059.1 JASPAR - 34331796 34331806 7.0E-06 TACCACGTGGC 11 V_HNF3A_01_M01261 TRANSFAC + 34327950 34327959 9.0E-06 ATGTAAATAA 10 V_TTF1_Q6_M00794 TRANSFAC + 34329298 34329309 3.0E-06 CAGTCAAGTGTT 12 V_YY1_Q6_02_M01035 TRANSFAC + 34329333 34329343 2.0E-06 TCTGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC + 34327942 34327964 6.0E-06 CTTGGGAAATGTAAATAATACAT 23 V_ERR1_Q3_M01841 TRANSFAC - 34327969 34327983 0.0E+00 CAATGACATTGAAAA 15 V_SOX12_04_M02900 TRANSFAC + 34331817 34331832 6.0E-06 AGACAGAAAAAGAAAA 16 V_GRE_C_M00205 TRANSFAC - 34329111 34329126 1.0E-06 TTTTCCAAGTGTTCTT 16 V_NCX_02_M01420 TRANSFAC - 34327950 34327966 6.0E-06 GAATGTATTATTTACAT 17 V_HNF4A_Q6_01_M02016 TRANSFAC - 34329163 34329177 6.0E-06 ATCCAAAGGTCAAAC 15 V_MYCN_01_M02259 TRANSFAC - 34331796 34331805 3.0E-06 ACCACGTGGC 10 V_POU6F1_01_M00465 TRANSFAC - 34328222 34328232 1.0E-06 GCAAAAATTAT 11 V_TBP_06_M02814 TRANSFAC + 34328338 34328353 7.0E-06 GCTTTTTAAATAAGTT 16 V_NR1B1_Q6_M02110 TRANSFAC - 34329164 34329173 0.0E+00 AAAGGTCAAA 10 V_AP1_Q2_01_M00924 TRANSFAC - 34329878 34329889 1.0E-06 TGACTCATTCTT 12 V_OCT_Q6_M00795 TRANSFAC - 34327949 34327959 2.0E-06 TTATTTACATT 11 V_FREAC2_01_M00290 TRANSFAC + 34327947 34327962 1.0E-06 GAAATGTAAATAATAC 16 V_CIZ_01_M00734 TRANSFAC + 34328211 34328219 2.0E-06 GAAAAAATC 9 V_TTF1_Q5_M02034 TRANSFAC - 34329297 34329310 2.0E-06 GAACACTTGACTGG 14 V_NKX25_03_M01414 TRANSFAC - 34329148 34329163 3.0E-06 CCAGGCACTTGAATCT 16 V_BRN4_01_M01473 TRANSFAC - 34327949 34327965 9.0E-06 AATGTATTATTTACATT 17 V_OCT1_Q6_M00195 TRANSFAC + 34327946 34327960 1.0E-06 GGAAATGTAAATAAT 15 V_FOXL1_04_M02753 TRANSFAC + 34327947 34327963 0.0E+00 GAAATGTAAATAATACA 17 V_HNF4_Q6_01_M01031 TRANSFAC - 34329165 34329178 5.0E-06 AATCCAAAGGTCAA 14 V_ERR1_Q2_M00511 TRANSFAC - 34329164 34329177 8.0E-06 ATCCAAAGGTCAAA 14 V_PXR_Q2_M00964 TRANSFAC - 34327977 34327988 9.0E-06 GAGGTCAATGAC 12 V_TCF7_04_M02921 TRANSFAC - 34327950 34327964 7.0E-06 ATGTATTATTTACAT 15 V_LMX1B_01_M01363 TRANSFAC + 34328338 34328354 6.0E-06 GCTTTTTAAATAAGTTC 17 V_VDR_Q6_M00961 TRANSFAC - 34331773 34331784 3.0E-06 CTCTATGAACCT 12 V_TCF4_Q5_M00671 TRANSFAC - 34329869 34329876 1.0E-05 CCTTTGAA 8 V_STAT1STAT1_Q3_M01212 TRANSFAC - 34328228 34328240 5.0E-06 TTTTCACAGCAAA 13 V_FOXA2_03_M02260 TRANSFAC - 34327947 34327958 4.0E-06 TATTTACATTTC 12 V_NRF1_Q6_M00652 TRANSFAC + 34329201 34329210 2.0E-06 CGCATGCGCA 10 V_TITF1_Q3_M00432 TRANSFAC + 34329299 34329308 2.0E-06 AGTCAAGTGT 10 V_LEF1TCF1_Q4_M00978 TRANSFAC - 34329866 34329876 4.0E-06 CCTTTGAAGTC 11 V_RARA_03_M02787 TRANSFAC - 34329162 34329177 6.0E-06 ATCCAAAGGTCAAACC 16 V_DMRT2_01_M01147 TRANSFAC + 34327952 34327967 2.0E-06 GTAAATAATACATTCT 16 V_NUR77_Q5_M01217 TRANSFAC + 34329165 34329174 1.0E-06 TTGACCTTTG 10 V_EFC_Q6_M00626 TRANSFAC + 34328410 34328423 7.0E-06 AGTTACCATGGACC 14 V_SOX4_01_M01308 TRANSFAC + 34329858 34329865 1.0E-05 AACAAAGG 8 V_YY1_01_M00059 TRANSFAC + 34328450 34328466 0.0E+00 ACTCACCATTTATGAAC 17 V_SOX2_Q6_M01272 TRANSFAC - 34329854 34329869 1.0E-05 AGTCCCTTTGTTTGGG 16 V_SOX15_04_M02903 TRANSFAC - 34327971 34327985 2.0E-06 GTCAATGACATTGAA 15 V_MEF2A_05_M01301 TRANSFAC - 34328341 34328352 6.0E-06 ACTTATTTAAAA 12 V_ZFP128_04_M02932 TRANSFAC + 34328610 34328623 4.0E-06 CTTGTATTTATAAG 14 V_FOXK1_03_M02752 TRANSFAC + 34327947 34327963 0.0E+00 GAAATGTAAATAATACA 17 V_SOX9_Q4_M01284 TRANSFAC + 34329857 34329867 0.0E+00 AAACAAAGGGA 11 V_NF1_Q6_M00193 TRANSFAC - 34329118 34329135 8.0E-06 GCTTGGCACTTTTCCAAG 18 V_NKX21_01_M01312 TRANSFAC - 34329148 34329163 3.0E-06 CCAGGCACTTGAATCT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.