Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SCNN1G Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6340 sodium channel, non-voltage-gated 1, gamma subunit chr16 + 23189039 - 23194539 23194039 Transcription Factor Binding Sites   Download all TFBS in the SCNN1G promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 23194534 23194542 8.0E-06 ACACTTGAA 9 ZNF713_C2H2_full_monomeric_17_1 SELEX - 23197043 23197059 2.0E-06 ATGAAATCTGCCAAGAA 17 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 23193986 23193996 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 23194016 23194026 1.0E-05 GCCCCGCCCCC 11 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 23194014 23194027 8.0E-06 GGCCCCGCCCCCTA 14 SP1_MA0079.2 JASPAR - 23193986 23193995 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 23194016 23194025 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 23193983 23193999 1.0E-06 CAGGCCCCGCCCCCACC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 23194013 23194029 1.0E-06 CAGGCCCCGCCCCCTAG 17 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 23194520 23194535 6.0E-06 GCAGAAAGAAGCAAAC 16 PLAG1_MA0163.1 JASPAR + 23194007 23194020 1.0E-06 GGGTCCCTAGGGGG 14 Zfx_MA0146.1 JASPAR + 23193986 23193999 8.0E-06 GGGGGCGGGGCCTG 14 Zfx_MA0146.1 JASPAR + 23194016 23194029 8.0E-06 GGGGGCGGGGCCTG 14 V_SOX40_04_M02908 TRANSFAC + 23196963 23196978 6.0E-06 TTCACTTATAATAAAG 16 V_ZFX_01_M01593 TRANSFAC - 23193987 23194002 2.0E-06 CCCCAGGCCCCGCCCC 16 V_ZFX_01_M01593 TRANSFAC - 23194017 23194032 1.0E-06 GGCCAGGCCCCGCCCC 16 V_SP1_Q6_01_M00931 TRANSFAC + 23193987 23193996 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 23194017 23194026 4.0E-06 GGGGCGGGGC 10 V_EGR_Q6_M00807 TRANSFAC + 23193984 23193994 6.0E-06 GTGGGGGCGGG 11 V_NKX25_Q6_M02108 TRANSFAC + 23194533 23194543 5.0E-06 AACACTTGAAG 11 V_NKX25_Q6_M02108 TRANSFAC - 23194537 23194547 8.0E-06 CCCACTTCAAG 11 V_AP2_Q6_01_M00915 TRANSFAC - 23193994 23194006 1.0E-05 GCCTCCCCAGGCC 13 V_MAF_Q6_M00648 TRANSFAC + 23193723 23193738 3.0E-06 TGGAAGGAAGTCGCGG 16 V_SP1_03_M02281 TRANSFAC - 23193986 23193995 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 23194016 23194025 7.0E-06 CCCCGCCCCC 10 V_SOX21_03_M02803 TRANSFAC + 23196963 23196978 6.0E-06 TTCACTTATAATAAAG 16 V_GC_01_M00255 TRANSFAC + 23193985 23193998 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC + 23194015 23194028 0.0E+00 AGGGGGCGGGGCCT 14 V_OCT1_03_M00137 TRANSFAC + 23197119 23197131 2.0E-06 GGCATAATGAGAT 13 V_GATA3_05_M02859 TRANSFAC + 23197045 23197066 5.0E-06 CTTGGCAGATTTCATCTGTCAG 22 V_OLF1_01_M00261 TRANSFAC + 23194004 23194025 6.0E-06 GGCGGGTCCCTAGGGGGCGGGG 22 V_SP1_Q6_M00196 TRANSFAC + 23193985 23193997 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 23194015 23194027 0.0E+00 AGGGGGCGGGGCC 13 V_SP4_Q5_M01273 TRANSFAC - 23193986 23193996 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 23194016 23194026 1.0E-06 GCCCCGCCCCC 11 V_PLAG1_01_M01778 TRANSFAC + 23193737 23193752 2.0E-06 GGGGCAGTAATAGGGG 16 V_NKX22_01_M00485 TRANSFAC - 23194532 23194541 7.0E-06 TCAAGTGTTT 10 V_MYB_Q5_01_M00913 TRANSFAC - 23197061 23197069 4.0E-06 TAACTGACA 9 V_ZFP161_04_M02933 TRANSFAC - 23193840 23193853 3.0E-06 ACCGCGCAGTGCCT 14 V_MYB_Q3_M00773 TRANSFAC + 23197059 23197069 9.0E-06 TCTGTCAGTTA 11 V_STAT1STAT1_Q3_M01212 TRANSFAC - 23197029 23197041 1.0E-05 ATTTCCCGGCAGC 13 V_ZFP281_01_M01597 TRANSFAC + 23193985 23193995 6.0E-06 TGGGGGCGGGG 11 V_FOXJ2_01_M00422 TRANSFAC + 23194524 23194541 7.0E-06 AAAGAAGCAAACACTTGA 18 V_SP1_Q2_01_M00933 TRANSFAC - 23193986 23193995 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 23194016 23194025 4.0E-06 CCCCGCCCCC 10 V_MEF2A_05_M01301 TRANSFAC + 23196966 23196977 9.0E-06 ACTTATAATAAA 12 V_UF1H3BETA_Q6_M01068 TRANSFAC + 23193983 23193996 1.0E-06 GGTGGGGGCGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 23193985 23193997 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 23194015 23194027 0.0E+00 AGGGGGCGGGGCC 13 V_SOX14_03_M02798 TRANSFAC + 23196963 23196978 6.0E-06 TTCACTTATAATAAAG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.