Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SCN4A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6329 sodium channel, voltage-gated, type IV, alpha subunit chr17 - 62049778 - 62055278 62050278 Transcription Factor Binding Sites   Download all TFBS in the SCN4A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR + 62051771 62051781 2.0E-06 AGCGTGGGCGT 11 SOX8_HMG_full_dimeric_15_1 SELEX + 62052173 62052187 7.0E-06 GACAGATCCAGTGTT 15 STAT1_MA0137.2 JASPAR - 62054161 62054175 5.0E-06 ACTTTCCAAGAAGTT 15 EGR1_C2H2_full_monomeric_14_1 SELEX - 62051769 62051782 4.0E-06 CACGCCCACGCTCA 14 SCRT2_C2H2_DBD_monomeric_13_1 SELEX + 62051593 62051605 1.0E-06 GCTCAACAGGTGG 13 EGR2_C2H2_full_monomeric_15_1 SELEX - 62051769 62051783 3.0E-06 GCACGCCCACGCTCA 15 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 62054180 62054193 7.0E-06 ACACCAGCTGTCTT 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 62054180 62054193 4.0E-06 AAGACAGCTGGTGT 14 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 62051768 62051782 5.0E-06 CACGCCCACGCTCAC 15 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 62051593 62051607 2.0E-06 GCTCAACAGGTGGGG 15 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 62051787 62051801 1.0E-06 TGCACACACTTGCAC 15 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 62051797 62051811 6.0E-06 TGCACACACAGGCAC 15 EGR4_C2H2_DBD_monomeric_16_2 SELEX - 62051768 62051783 4.0E-06 GCACGCCCACGCTCAC 16 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 62051647 62051661 2.0E-06 GGCCACGCCCTTGTG 15 Myf_MA0055.1 JASPAR - 62054181 62054192 7.0E-06 AGACAGCTGGTG 12 EGR2_C2H2_DBD_monomeric_11_1 SELEX - 62051771 62051781 2.0E-06 ACGCCCACGCT 11 IRF3_IRF_full_trimeric_21_1 SELEX - 62054235 62054255 6.0E-06 TTGAAGGGGAAACGGAAGCCA 21 ETV6_ETS_full_dimeric_15_1 SELEX - 62054236 62054250 5.0E-06 GGGGAAACGGAAGCC 15 Sox2_MA0143.1 JASPAR + 62046761 62046775 6.0E-06 CTTTTCTTATCCTGA 15 TBX1_TBX_DBD_dimeric_20_1 SELEX - 62052053 62052072 2.0E-06 TCGTGTAATGAAAAGAGTGA 20 V_MTF1_01_M01242 TRANSFAC + 62051784 62051803 3.0E-06 ATGTGCACACACTTGCACAC 20 V_AREB6_01_M00412 TRANSFAC + 62052142 62052154 5.0E-06 CTCTCACCTGAGT 13 V_STAT5A_Q6_M01890 TRANSFAC + 62054160 62054172 3.0E-06 AAACTTCTTGGAA 13 V_ZSCAN4_03_M02838 TRANSFAC + 62051781 62051797 0.0E+00 TGCATGTGCACACACTT 17 V_GM397_03_M02760 TRANSFAC + 62051781 62051797 0.0E+00 TGCATGTGCACACACTT 17 V_FOXO4_02_M00476 TRANSFAC - 62046777 62046790 6.0E-06 CATTTGTTTTCCAT 14 V_MMEF2_Q6_M00405 TRANSFAC + 62046800 62046815 4.0E-06 CTCCTTATAAAAGCCC 16 V_STAT_Q6_M00777 TRANSFAC + 62054159 62054171 3.0E-06 AAAACTTCTTGGA 13 V_HFH4_01_M00742 TRANSFAC - 62046781 62046793 7.0E-06 GAGCATTTGTTTT 13 V_EGR1_02_M01972 TRANSFAC + 62051771 62051781 3.0E-06 AGCGTGGGCGT 11 V_HELIOSA_02_M01004 TRANSFAC + 62046775 62046785 4.0E-06 ATATGGAAAAC 11 V_MYF_01_M01302 TRANSFAC - 62054181 62054192 7.0E-06 AGACAGCTGGTG 12 V_POLY_C_M00212 TRANSFAC + 62054155 62054172 3.0E-06 CAGTAAAACTTCTTGGAA 18 V_OLF1_01_M00261 TRANSFAC + 62052158 62052179 3.0E-06 CAGAGCTCCCCAGGGGACAGAT 22 V_MATH1_Q2_M01716 TRANSFAC - 62054181 62054190 6.0E-06 ACAGCTGGTG 10 V_KLF7_03_M02773 TRANSFAC + 62051645 62051660 6.0E-06 CTGGCCACGCCCTTGT 16 V_EGR2_01_M00246 TRANSFAC + 62051770 62051781 8.0E-06 GAGCGTGGGCGT 12 V_FOXO1_Q5_M01216 TRANSFAC + 62046780 62046788 5.0E-06 GAAAACAAA 9 V_MYOD_Q6_02_M02100 TRANSFAC + 62054184 62054192 8.0E-06 CAGCTGTCT 9 V_SP4_04_M02914 TRANSFAC - 62051645 62051659 1.0E-06 CAAGGGCGTGGCCAG 15 V_DELTAEF1_01_M00073 TRANSFAC + 62052143 62052153 5.0E-06 TCTCACCTGAG 11 V_STAT1STAT1_Q3_M01212 TRANSFAC - 62054162 62054174 8.0E-06 CTTTCCAAGAAGT 13 V_ZABC1_01_M01306 TRANSFAC + 62054226 62054233 1.0E-05 ATTCCAAC 8 V_SOX2_01_M02246 TRANSFAC + 62046761 62046775 6.0E-06 CTTTTCTTATCCTGA 15 V_STAT1_05_M01260 TRANSFAC + 62054161 62054182 8.0E-06 AACTTCTTGGAAAGTGTCTACA 22 V_SMAD1_01_M01590 TRANSFAC - 62052230 62052241 3.0E-06 AAGAAGAAAGGC 12 V_EGR3_01_M00245 TRANSFAC + 62051770 62051781 2.0E-06 GAGCGTGGGCGT 12 V_NANOG_02_M01247 TRANSFAC - 62046756 62046775 3.0E-06 TCAGGATAAGAAAAGGAAAT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.