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SCN2B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6327 sodium channel, voltage-gated, type II, beta subunit chr11 - 118046837 - 118052337 118047337 Transcription Factor Binding Sites   Download all TFBS in the SCN2B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 118042510 118042528 0.0E+00 TGACCACTAGAGGGCACGC 19 GMEB2_SAND_DBD_dimeric_8_2 SELEX + 118045988 118045995 7.0E-06 TTACGTAA 8 GMEB2_SAND_DBD_dimeric_8_2 SELEX - 118045988 118045995 7.0E-06 TTACGTAA 8 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 118051308 118051319 2.0E-06 TGACATGTGTCT 12 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 118047447 118047455 8.0E-06 AAAAGTCAT 9 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 118045985 118045999 4.0E-06 TCATTACGTAAATGA 15 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 118042530 118042543 8.0E-06 AGAGTCAAACGTCA 14 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 118045732 118045745 4.0E-06 GAGTTCAAATTTCA 14 EWSR1-FLI1_MA0149.1 JASPAR - 118046449 118046466 0.0E+00 GGATGGAATGGAGGAAGG 18 POU1F1_POU_DBD_monomeric_14_1 SELEX + 118045987 118046000 7.0E-06 ATTACGTAAATGAC 14 NFIL3_MA0025.1 JASPAR - 118045985 118045995 4.0E-06 TTACGTAATGA 11 SOX9_HMG_DBD_monomeric_9_1 SELEX - 118042618 118042626 9.0E-06 AAACAATGG 9 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 118051308 118051319 4.0E-06 TGACATGTGTCT 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 118051308 118051319 4.0E-06 TGACATGTGTCT 12 Pax4_MA0068.1 JASPAR - 118047379 118047408 4.0E-06 CAATATTTACCCCATCCCCCTTTTCTCTCC 30 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 118051308 118051319 2.0E-06 TGACATGTGTCT 12 SRY_MA0084.1 JASPAR - 118042620 118042628 7.0E-06 TAAAACAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 118047398 118047411 8.0E-06 GGTAAATATTGTGG 14 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 118047438 118047454 9.0E-06 AGGGCATAAAAAAGTCA 17 NFATC1_NFAT_full_dimeric_20_1 SELEX - 118047278 118047297 2.0E-06 GATGGAAATAAAGCTTCCTT 20 CTCF_C2H2_full_monomeric_17_1 SELEX + 118042511 118042527 1.0E-06 CGTGCCCTCTAGTGGTC 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 118045732 118045745 8.0E-06 GAGTTCAAATTTCA 14 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX + 118045732 118045746 3.0E-06 GAGTTCAAATTTCAG 15 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 118051308 118051319 1.0E-06 TGACATGTGTCT 12 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 118045732 118045745 4.0E-06 GAGTTCAAATTTCA 14 SOX9_MA0077.1 JASPAR - 118042618 118042626 2.0E-06 AAACAATGG 9 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 118045985 118045998 9.0E-06 CATTTACGTAATGA 14 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 118045732 118045745 5.0E-06 GAGTTCAAATTTCA 14 NFIA_NFI_full_monomeric_10_1 SELEX + 118046593 118046602 9.0E-06 AGTGCCAAGA 10 TBX1_TBX_DBD_dimeric_20_1 SELEX - 118051433 118051452 5.0E-06 TAATGTGAGACCAAGTGAGA 20 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 118051308 118051319 5.0E-06 TGACATGTGTCT 12 V_FOXP1_01_M00987 TRANSFAC - 118045891 118045910 4.0E-06 GTGTTTGTGATTTGGTGCAT 20 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 118045901 118045914 1.0E-05 TGACGTGTTTGTGA 14 V_TCF3_01_M01594 TRANSFAC - 118045993 118046005 3.0E-06 CCTTTGTCATTTA 13 V_ALX4_01_M00619 TRANSFAC + 118045783 118045795 4.0E-06 CCTGAGTATAATA 13 V_SMAD3_Q6_01_M01888 TRANSFAC + 118045719 118045731 5.0E-06 AGTCAGACACAGG 13 V_BCL6_01_M01183 TRANSFAC - 118047448 118047463 5.0E-06 TTTTCAAAATGACTTT 16 V_AML3_Q6_M01856 TRANSFAC - 118047406 118047413 1.0E-05 AACCACAA 8 V_FOXJ2_02_M00423 TRANSFAC - 118047399 118047412 1.0E-06 ACCACAATATTTAC 14 V_SRY_02_M00160 TRANSFAC - 118042617 118042628 8.0E-06 TAAAACAATGGG 12 V_NFAT3_Q3_M01734 TRANSFAC + 118046422 118046431 6.0E-06 TTTTTTTCCT 10 V_AP4_Q6_M00176 TRANSFAC + 118042580 118042589 5.0E-06 CACAGCTGGA 10 V_POU3F2_02_M00464 TRANSFAC + 118046053 118046062 9.0E-06 TGATGTTAAT 10 V_STAT6_01_M00494 TRANSFAC + 118047288 118047295 7.0E-06 TATTTCCA 8 V_E2A_Q2_M00804 TRANSFAC - 118047423 118047436 6.0E-06 CCACCTGCTTTTTG 14 V_NFAT2_01_M01748 TRANSFAC - 118047288 118047296 6.0E-06 ATGGAAATA 9 V_TCFAP2E_04_M02926 TRANSFAC - 118046421 118046434 1.0E-06 TTCAGGAAAAAAAT 14 V_SOX7_03_M02807 TRANSFAC - 118042611 118042632 2.0E-06 CCGGTAAAACAATGGGGCTAGA 22 V_HELIOSA_02_M01004 TRANSFAC - 118046424 118046434 7.0E-06 TTCAGGAAAAA 11 V_TCF3_04_M02816 TRANSFAC + 118047252 118047268 3.0E-06 TGTACTTCAAAGACATA 17 V_FOXA2_02_M02853 TRANSFAC + 118047459 118047473 9.0E-06 GAAAAGAACAAAATC 15 V_AML2_01_M01759 TRANSFAC - 118047406 118047413 1.0E-05 AACCACAA 8 V_MAZ_Q6_01_M02023 TRANSFAC - 118042461 118042474 6.0E-06 CAGGGTGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 118046949 118046962 6.0E-06 TTGGGAGGGGAGGT 14 V_EGR1_04_M02848 TRANSFAC - 118051270 118051285 1.0E-06 TGCAGAGTGGGACTTG 16 V_ISRE_01_M00258 TRANSFAC - 118042592 118042606 7.0E-06 CGGTTTCTGATCTCA 15 V_GR_01_M00955 TRANSFAC - 118047457 118047483 6.0E-06 AAATTTCTGGGATTTTGTTCTTTTCAA 27 V_TCF7_03_M02817 TRANSFAC + 118047252 118047268 2.0E-06 TGTACTTCAAAGACATA 17 V_PNR_01_M01650 TRANSFAC + 118045732 118045745 4.0E-06 GAGTTCAAATTTCA 14 V_NKX3A_01_M00451 TRANSFAC + 118046229 118046240 6.0E-06 CAATAAGTAAGT 12 V_CTCF_02_M01259 TRANSFAC - 118042512 118042531 0.0E+00 CTGTGACCACTAGAGGGCAC 20 V_CTCF_01_M01200 TRANSFAC - 118042510 118042529 0.0E+00 GTGACCACTAGAGGGCACGC 20 V_SOX9_B1_M00410 TRANSFAC - 118042616 118042629 3.0E-06 GTAAAACAATGGGG 14 V_EVI1_06_M00011 TRANSFAC + 118045826 118045834 9.0E-06 ACAAGATAC 9 V_GFI1_Q6_M01067 TRANSFAC - 118051333 118051345 9.0E-06 AAAAATCTCTGGC 13 V_MTF1_06_M02882 TRANSFAC - 118051369 118051382 0.0E+00 CATTAAGAAAAAAA 14 NR1H2_RXRA_MA0115.1 JASPAR + 118042529 118042545 2.0E-06 CAGAGTCAAACGTCAAG 17 V_SMAD3_03_M02794 TRANSFAC + 118046520 118046536 4.0E-06 CCAACCCAGACATCATT 17 V_MEF3_B_M00319 TRANSFAC - 118045778 118045790 7.0E-06 TACTCAGGTTACA 13 V_CREBP1_01_M00040 TRANSFAC + 118045988 118045995 7.0E-06 TTACGTAA 8 V_CREBP1_01_M00040 TRANSFAC - 118045988 118045995 7.0E-06 TTACGTAA 8 V_SRF_06_M02916 TRANSFAC - 118051366 118051382 9.0E-06 CATTAAGAAAAAAAGAG 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 118046449 118046466 0.0E+00 GGATGGAATGGAGGAAGG 18 V_SMAD3_Q6_M00701 TRANSFAC - 118045719 118045727 6.0E-06 TGTCTGACT 9 V_EKLF_Q5_M01874 TRANSFAC + 118042465 118042474 9.0E-06 CCCCACCCTG 10 V_SOX2_Q6_M01272 TRANSFAC + 118042614 118042629 3.0E-06 AGCCCCATTGTTTTAC 16 V_NFE2_01_M00037 TRANSFAC - 118046070 118046080 4.0E-06 TGCTGAGTTAC 11 V_NFE2_01_M00037 TRANSFAC - 118046500 118046510 8.0E-06 TGCTGAGGCAC 11 V_MEF2_01_M00006 TRANSFAC - 118047448 118047463 2.0E-06 TTTTCAAAATGACTTT 16 V_RXRLXRB_01_M01198 TRANSFAC + 118045733 118045745 4.0E-06 AGTTCAAATTTCA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.