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SCN1A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6323 sodium channel, voltage-gated, type I, alpha subunit chr2 - 167005142 - 167010642 167005642 Transcription Factor Binding Sites   Download all TFBS in the SCN1A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TEF_bZIP_DBD_dimeric_12_1 SELEX + 167005683 167005694 9.0E-06 CCTTACATAACG 12 HLF_bZIP_full_dimeric_12_1 SELEX + 167005683 167005694 7.0E-06 CCTTACATAACG 12 NFIL3_MA0025.1 JASPAR - 167005682 167005692 6.0E-06 TTATGTAAGGC 11 Hltf_MA0109.1 JASPAR - 167000726 167000735 6.0E-06 TAACTTTTAT 10 REST_MA0138.2 JASPAR - 167004594 167004614 0.0E+00 TTCAGTACCTTGGACAGGATG 21 Sox3_HMG_DBD_dimeric_17_1 SELEX + 167000696 167000712 8.0E-06 TAGCAATAACAATATTT 17 V_RUSH1A_02_M01107 TRANSFAC - 167000726 167000735 6.0E-06 TAACTTTTAT 10 V_HNF3B_01_M00131 TRANSFAC - 167000700 167000714 7.0E-06 TGAAATATTGTTATT 15 V_SATB1_Q3_M01723 TRANSFAC - 167000707 167000722 9.0E-06 AGAAATACTGAAATAT 16 V_SOX5_01_M00042 TRANSFAC + 167000701 167000710 4.0E-06 ATAACAATAT 10 V_RFX4_03_M02789 TRANSFAC - 167000787 167000801 2.0E-06 GAACATAGCAACAGA 15 V_HOXD13_01_M01404 TRANSFAC + 167000720 167000735 4.0E-06 TCTTCAATAAAAGTTA 16 V_TCFAP2E_04_M02926 TRANSFAC - 167000716 167000729 8.0E-06 TTATTGAAGAAATA 14 V_LDSPOLYA_B_M00317 TRANSFAC - 167004625 167004640 9.0E-06 TTCCTGTGTGTCCTTG 16 V_HBP1_Q2_M01661 TRANSFAC + 167000722 167000730 4.0E-06 TTCAATAAA 9 V_CETS1P54_02_M00074 TRANSFAC + 167004632 167004644 4.0E-06 ACACAGGAAGATA 13 V_SOX13_03_M02797 TRANSFAC + 167000698 167000713 2.0E-06 GCAATAACAATATTTC 16 V_DBP_Q6_01_M01872 TRANSFAC - 167005685 167005692 5.0E-06 TTATGTAA 8 V_E4BP4_01_M00045 TRANSFAC - 167005683 167005694 2.0E-06 CGTTATGTAAGG 12 V_ARID5A_03_M02736 TRANSFAC - 167000700 167000713 5.0E-06 GAAATATTGTTATT 14 V_FOXK1_04_M02856 TRANSFAC + 167000695 167000709 5.0E-06 ATAGCAATAACAATA 15 V_RFXDC2_03_M02790 TRANSFAC - 167000787 167000801 5.0E-06 GAACATAGCAACAGA 15 V_ZFP105_04_M02931 TRANSFAC + 167000718 167000734 6.0E-06 TTTCTTCAATAAAAGTT 17 V_MYOGNF1_01_M00056 TRANSFAC - 167000757 167000785 1.0E-06 CATCTCTTTTCACTGGCACCCTCCAGTGC 29 V_NRSF_01_M00256 TRANSFAC - 167004594 167004614 6.0E-06 TTCAGTACCTTGGACAGGATG 21 V_REST_02_M02256 TRANSFAC - 167004594 167004614 0.0E+00 TTCAGTACCTTGGACAGGATG 21 V_PLZF_02_M01075 TRANSFAC + 167000848 167000876 7.0E-06 TGGTACCTCTGGTAAAGCTCAAGTATAGG 29 V_SOX8_03_M02808 TRANSFAC - 167000698 167000714 9.0E-06 TGAAATATTGTTATTGC 17 V_RFX3_04_M02788 TRANSFAC - 167000783 167000805 4.0E-06 TGCAGAACATAGCAACAGACCAT 23

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