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SAA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6288 serum amyloid A1 chr11 + 18282807 - 18288307 18287807 Transcription Factor Binding Sites   Download all TFBS in the SAA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NF-kappaB_MA0061.1 JASPAR + 18287714 18287723 3.0E-06 GGGACTTTCC 10 PAX6_PAX_DBD_monomeric_19_1 SELEX + 18289469 18289487 2.0E-06 GTAGACGCATCACTGACCA 19 IRF7_IRF_DBD_dimeric_14_1 SELEX + 18289919 18289932 6.0E-06 AAAAAAATGAAAAA 14 IRF7_IRF_DBD_dimeric_14_1 SELEX + 18289925 18289938 8.0E-06 ATGAAAAAGAAAGT 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 18287591 18287602 1.0E-06 TGACAGCTGCCA 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 18287591 18287602 1.0E-06 TGGCAGCTGTCA 12 EBF1_EBF_full_dimeric_14_1 SELEX + 18287719 18287732 3.0E-06 TTTCCCCAGGGACC 14 TBP_MA0108.2 JASPAR + 18287779 18287793 3.0E-06 GTATAAATAGCAGCC 15 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 18287591 18287602 2.0E-06 TGACAGCTGCCA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 18287591 18287602 2.0E-06 TGGCAGCTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 18287591 18287602 1.0E-06 TGACAGCTGCCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 18287591 18287602 1.0E-06 TGGCAGCTGTCA 12 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 18290014 18290029 2.0E-06 TAAAAGTCCCTAAATA 16 MEF2B_MADS_full_dimeric_12_1 SELEX + 18287778 18287789 1.0E-05 AGTATAAATAGC 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 18290014 18290029 1.0E-06 TAAAAGTCCCTAAATA 16 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 18287591 18287602 2.0E-06 TGACAGCTGCCA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 18287591 18287602 2.0E-06 TGGCAGCTGTCA 12 RELA_MA0107.1 JASPAR + 18287714 18287723 6.0E-06 GGGACTTTCC 10 TBR1_TBX_full_monomeric_11_1 SELEX + 18289327 18289337 6.0E-06 AAGGTGAGAAA 11 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 18287602 18287618 3.0E-06 AGGCACATCTTGTTCCC 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 18287602 18287618 1.0E-06 GGGAACAAGATGTGCCT 17 SOX14_HMG_DBD_dimeric_12_1 SELEX - 18284467 18284478 5.0E-06 AGAATTTCATTG 12 MZF1_5-13_MA0057.1 JASPAR + 18287695 18287704 1.0E-05 GTAGGGGAAA 10 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 18284413 18284429 0.0E+00 CCATTCCAGGCATTCCT 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 18284443 18284459 1.0E-06 GCATTCCGGCCATTCCA 17 TBX2_TBX_full_monomeric_11_1 SELEX + 18289327 18289337 8.0E-06 AAGGTGAGAAA 11 IRF9_IRF_full_trimeric_15_1 SELEX + 18289924 18289938 4.0E-06 AATGAAAAAGAAAGT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 18289926 18289940 6.0E-06 TGAAAAAGAAAGTGC 15 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 18287591 18287602 2.0E-06 TGACAGCTGCCA 12 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 18287591 18287602 4.0E-06 TGGCAGCTGTCA 12 TEAD1_TEA_full_dimeric_17_1 SELEX - 18284413 18284429 0.0E+00 CCATTCCAGGCATTCCT 17 TEAD1_TEA_full_dimeric_17_1 SELEX - 18284443 18284459 0.0E+00 GCATTCCGGCCATTCCA 17 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 18287591 18287602 2.0E-06 TGACAGCTGCCA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 18287591 18287602 3.0E-06 TGGCAGCTGTCA 12 Sox11_HMG_DBD_dimeric_15_1 SELEX - 18284465 18284479 5.0E-06 AAGAATTTCATTGAG 15 IRF3_IRF_full_trimeric_21_1 SELEX + 18289919 18289939 0.0E+00 AAAAAAATGAAAAAGAAAGTG 21 ZNF524_C2H2_full_monomeric_14_1 SELEX + 18289835 18289848 6.0E-06 CTTGAACCCGAGAA 14 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 18287602 18287618 2.0E-06 AGGCACATCTTGTTCCC 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 18287602 18287618 1.0E-06 GGGAACAAGATGTGCCT 17 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 18287591 18287602 1.0E-06 TGACAGCTGCCA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 18287591 18287602 1.0E-06 TGGCAGCTGTCA 12 AR_nuclearreceptor_full_dimeric_17_1 SELEX + 18287602 18287618 1.0E-06 AGGCACATCTTGTTCCC 17 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 18287602 18287618 1.0E-06 GGGAACAAGATGTGCCT 17 V_CEBPG_Q6_M00622 TRANSFAC + 18290051 18290063 8.0E-06 CTCACGTCACAAT 13 V_NFKAPPAB65_01_M00052 TRANSFAC + 18287714 18287723 7.0E-06 GGGACTTTCC 10 V_NFKB_C_M00208 TRANSFAC + 18287713 18287724 1.0E-06 AGGGACTTTCCC 12 V_TCF3_01_M01594 TRANSFAC - 18289920 18289932 5.0E-06 TTTTTCATTTTTT 13 V_NFKB_Q6_01_M00774 TRANSFAC - 18287713 18287728 2.0E-06 CCTGGGGAAAGTCCCT 16 V_EBF_Q6_M00977 TRANSFAC + 18287720 18287730 5.0E-06 TTCCCCAGGGA 11 V_ATF5_01_M01295 TRANSFAC + 18285816 18285826 3.0E-06 ATTCTTCCTTT 11 V_HMGIY_Q3_M01010 TRANSFAC - 18289917 18289931 0.0E+00 TTTTCATTTTTTTTA 15 V_AR_Q6_01_M01996 TRANSFAC + 18287604 18287618 7.0E-06 GCACATCTTGTTCCC 15 V_MAFB_03_M02879 TRANSFAC + 18290075 18290089 3.0E-06 CATTTGCAAGAATAT 15 V_IRF_Q6_01_M00972 TRANSFAC + 18289921 18289931 2.0E-06 AAAAATGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 18289919 18289934 1.0E-06 AAAAAAATGAAAAAGA 16 V_IRF2_Q6_M01882 TRANSFAC + 18289925 18289940 1.0E-06 ATGAAAAAGAAAGTGC 16 V_P50P50_Q3_M01223 TRANSFAC + 18287712 18287724 5.0E-06 CAGGGACTTTCCC 13 V_AIRE_02_M01000 TRANSFAC - 18285703 18285727 3.0E-06 GCTTTTTTTCTGATCACATTCAGCT 25 V_TCFAP2E_04_M02926 TRANSFAC + 18289914 18289927 3.0E-06 ATCTAAAAAAAATG 14 V_PAX_Q6_M00808 TRANSFAC + 18290045 18290055 0.0E+00 CTGGAACTCAC 11 V_BARBIE_01_M00238 TRANSFAC - 18287734 18287748 4.0E-06 AAGAAAAGCTGGATG 15 V_ZFP105_03_M02827 TRANSFAC + 18289915 18289929 4.0E-06 TCTAAAAAAAATGAA 15 V_TATA_01_M00252 TRANSFAC + 18287779 18287793 3.0E-06 GTATAAATAGCAGCC 15 V_CEBPB_02_M00117 TRANSFAC + 18287621 18287634 1.0E-06 AGGTTGCACAACTG 14 V_RSRFC4_Q2_M00407 TRANSFAC + 18287776 18287792 7.0E-06 TCAGTATAAATAGCAGC 17 V_NFKB_Q6_M00194 TRANSFAC + 18287712 18287725 9.0E-06 CAGGGACTTTCCCC 14 V_MAZ_Q6_01_M02023 TRANSFAC + 18286298 18286311 7.0E-06 AGGGGAGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 18286322 18286335 0.0E+00 AGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 18286327 18286340 0.0E+00 AGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 18286332 18286345 0.0E+00 AGGGGAGGGGAGGG 14 V_IRF_Q6_M00772 TRANSFAC - 18289921 18289935 0.0E+00 TTCTTTTTCATTTTT 15 V_OCT1_04_M00138 TRANSFAC + 18289917 18289939 7.0E-06 TAAAAAAAATGAAAAAGAAAGTG 23 V_AR_04_M01201 TRANSFAC - 18287603 18287617 6.0E-06 GGAACAAGATGTGCC 15 V_ATF1_Q6_01_M01861 TRANSFAC + 18290052 18290060 4.0E-06 TCACGTCAC 9 V_XFD2_01_M00268 TRANSFAC + 18287778 18287791 9.0E-06 AGTATAAATAGCAG 14 V_MEF2_Q6_01_M00941 TRANSFAC - 18287779 18287790 1.0E-05 TGCTATTTATAC 12 V_ATF1_04_M02842 TRANSFAC + 18290060 18290073 7.0E-06 CAATGACGTGTATT 14 V_STAT3_03_M01595 TRANSFAC - 18285820 18285835 9.0E-06 ACATCTAGGAAAGGAA 16 V_IRF7_01_M00453 TRANSFAC - 18285661 18285678 5.0E-06 TGGCAAATTGAATATCAC 18 V_TFIII_Q6_M00706 TRANSFAC + 18284322 18284330 6.0E-06 AGAGGGAGG 9 V_PTF1BETA_Q6_M00657 TRANSFAC - 18284397 18284410 4.0E-06 GGGAAAATTACCAG 14 V_MYOD_Q6_02_M02100 TRANSFAC - 18287591 18287599 4.0E-06 CAGCTGTCA 9 V_MTF1_06_M02882 TRANSFAC + 18285712 18285725 1.0E-05 TGATCAGAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 18289914 18289927 5.0E-06 ATCTAAAAAAAATG 14 V_MTF1_06_M02882 TRANSFAC + 18289921 18289934 1.0E-06 AAAAATGAAAAAGA 14 V_TBP_01_M00471 TRANSFAC + 18287780 18287787 4.0E-06 TATAAATA 8 V_OSR2_04_M02889 TRANSFAC + 18285671 18285686 6.0E-06 ATTTGCCACTTGCTAA 16 V_FOX_Q2_M00809 TRANSFAC + 18290084 18290096 8.0E-06 GAATATATACTTT 13 V_RSRFC4_01_M00026 TRANSFAC - 18287776 18287791 8.0E-06 CTGCTATTTATACTGA 16 V_IRF1_Q6_01_M01881 TRANSFAC - 18289920 18289933 2.0E-06 CTTTTTCATTTTTT 14 V_IRF1_Q6_01_M01881 TRANSFAC - 18289926 18289939 2.0E-06 CACTTTCTTTTTCA 14 V_NFKAPPAB_01_M00054 TRANSFAC + 18287714 18287723 3.0E-06 GGGACTTTCC 10 V_PPARG_02_M00515 TRANSFAC + 18284349 18284371 5.0E-06 CAGGAGCTCACTATGGCCCTTTT 23 V_PAX4_02_M00377 TRANSFAC - 18284399 18284409 7.0E-06 GGAAAATTACC 11 V_MAFK_04_M02880 TRANSFAC + 18289918 18289932 1.0E-05 AAAAAAAATGAAAAA 15 V_AR_01_M00481 TRANSFAC - 18287603 18287617 2.0E-06 GGAACAAGATGTGCC 15 V_PAX4_04_M00380 TRANSFAC + 18285718 18285747 5.0E-06 GAAAAAAAGCACGACTGCTATGACTAGTCT 30 V_OCT4_01_M01125 TRANSFAC - 18290076 18290090 6.0E-06 TATATTCTTGCAAAT 15 V_ER_Q6_M00191 TRANSFAC - 18290052 18290070 1.0E-05 ACACGTCATTGTGACGTGA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.