Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

S100A1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6271 S100 calcium binding protein A1 chr1 + 153595872 - 153601372 153600872 Transcription Factor Binding Sites   Download all TFBS in the S100A1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR - 153599492 153599502 9.0E-06 TGTGTGGGCGG 11 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 153599455 153599462 5.0E-06 ATAAACAA 8 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 153603809 153603826 7.0E-06 TTATTTAACCACCGATTA 18 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 153599425 153599440 4.0E-06 ACAGGTCATAAGGTTG 16 NFIA_NFI_full_dimeric_15_1 SELEX + 153598130 153598144 8.0E-06 TTGGCCTCCTTCCAG 15 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 153603810 153603826 6.0E-06 TATTTAACCACCGATTA 17 TBR1_TBX_DBD_monomeric_10_1 SELEX + 153600050 153600059 9.0E-06 AGGTGTCAAA 10 FOXF2_MA0030.1 JASPAR - 153599454 153599467 1.0E-06 CCAACATAAACAAG 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 153603804 153603815 7.0E-06 TAAATAAATATG 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 153603805 153603817 1.0E-06 GTTAAATAAATAT 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 153603805 153603815 1.0E-06 TAAATAAATAT 11 EWSR1-FLI1_MA0149.1 JASPAR + 153600725 153600742 3.0E-06 GGAACGGGGCAAGCAAGG 18 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 153602596 153602607 5.0E-06 GGTAAAAATAGA 12 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 153599426 153599443 4.0E-06 CAGGTCATAAGGTTGTTT 18 Klf4_MA0039.2 JASPAR - 153602649 153602658 1.0E-05 AGGGTGGGGC 10 ZNF524_C2H2_full_dimeric_12_1 SELEX - 153600208 153600219 6.0E-06 ACCCTGGGACCC 12 EOMES_TBX_DBD_monomeric_13_1 SELEX + 153600049 153600061 9.0E-06 GAGGTGTCAAATT 13 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 153603806 153603816 4.0E-06 TTAAATAAATA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 153603745 153603754 2.0E-06 CCAATAAAAC 10 ZNF740_C2H2_full_monomeric_10_1 SELEX - 153600852 153600861 5.0E-06 ACCCCCCCAC 10 EGR2_C2H2_full_monomeric_15_1 SELEX + 153599490 153599504 8.0E-06 ATCCGCCCACACACA 15 TBR1_TBX_full_monomeric_11_1 SELEX + 153600049 153600059 7.0E-06 GAGGTGTCAAA 11 FOXI1_MA0042.1 JASPAR + 153599453 153599464 1.0E-05 GCTTGTTTATGT 12 FOXI1_MA0042.1 JASPAR + 153603803 153603814 0.0E+00 GCATATTTATTT 12 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX + 153603758 153603773 4.0E-06 GGGTTCAAATTCCAGC 16 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 153603806 153603816 1.0E-06 TTAAATAAATA 11 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 153599426 153599441 4.0E-06 CAGGTCATAAGGTTGT 16 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 153603745 153603754 1.0E-06 CCAATAAAAC 10 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 153599497 153599511 3.0E-06 CACACACACTCTAAC 15 EGR4_C2H2_DBD_monomeric_16_2 SELEX + 153599490 153599505 5.0E-06 ATCCGCCCACACACAC 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 153603615 153603631 4.0E-06 ACATGCTCCACATTCTT 17 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 153603809 153603826 9.0E-06 TTATTTAACCACCGATTA 18 TBX2_TBX_full_monomeric_11_1 SELEX + 153600049 153600059 4.0E-06 GAGGTGTCAAA 11 Foxd3_MA0041.1 JASPAR + 153603803 153603814 1.0E-05 GCATATTTATTT 12 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 153603746 153603754 6.0E-06 CCAATAAAA 9 Hltf_MA0109.1 JASPAR - 153597062 153597071 6.0E-06 TTCCTTATAT 10 NFIB_NFI_full_dimeric_15_1 SELEX + 153598130 153598144 7.0E-06 TTGGCCTCCTTCCAG 15 SRF_MADS_full_dimeric_16_1 SELEX + 153598088 153598103 1.0E-06 TTTCCATATATGTGAA 16 SRF_MADS_full_dimeric_16_1 SELEX - 153598088 153598103 5.0E-06 TTCACATATATGGAAA 16 FOXI1_forkhead_full_dimeric_17_1 SELEX + 153597097 153597113 2.0E-06 AAGTTTCCAGTAAAAAA 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 153603745 153603754 1.0E-06 CCAATAAAAC 10 Zfp740_C2H2_DBD_monomeric_10_1 SELEX - 153600852 153600861 2.0E-06 ACCCCCCCAC 10 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 153599426 153599440 6.0E-06 CAGGTCATAAGGTTG 15 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 153599455 153599462 5.0E-06 ATAAACAA 8 POU3F3_POU_DBD_dimeric_12_1 SELEX - 153603805 153603816 8.0E-06 TTAAATAAATAT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 153603809 153603826 7.0E-06 TTATTTAACCACCGATTA 18 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 153599426 153599441 2.0E-06 CAGGTCATAAGGTTGT 16 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 153603806 153603818 6.0E-06 GGTTAAATAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 153599456 153599468 7.0E-06 CCCAACATAAACA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 153603805 153603815 1.0E-06 TAAATAAATAT 11 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 153603745 153603754 1.0E-06 CCAATAAAAC 10 V_RUSH1A_02_M01107 TRANSFAC - 153597062 153597071 6.0E-06 TTCCTTATAT 10 V_HNF3B_01_M00131 TRANSFAC + 153603801 153603815 0.0E+00 GGGCATATTTATTTA 15 V_FREAC7_01_M00293 TRANSFAC - 153603802 153603817 5.0E-06 GTTAAATAAATATGCC 16 V_HSF1_Q6_M01023 TRANSFAC - 153598156 153598172 1.0E-06 CTTCCAGGAGATTCACA 17 V_SMAD3_Q6_01_M01888 TRANSFAC - 153599382 153599394 6.0E-06 AGACAGACACGCC 13 V_FOXD3_01_M00130 TRANSFAC + 153603803 153603814 8.0E-06 GCATATTTATTT 12 V_FOXO4_02_M00476 TRANSFAC + 153599452 153599465 4.0E-06 AGCTTGTTTATGTT 14 V_MEF2_02_M00231 TRANSFAC + 153602590 153602611 4.0E-06 GTCCAGGGTAAAAATAGAGCCA 22 V_EOMES_03_M02747 TRANSFAC + 153600046 153600062 8.0E-06 CCGGAGGTGTCAAATTT 17 V_FOXJ1_03_M02750 TRANSFAC - 153599450 153599465 6.0E-06 AACATAAACAAGCTTT 16 V_GKLF_02_M01588 TRANSFAC + 153602649 153602660 5.0E-06 GCCCCACCCTCC 12 V_FOXP3_01_M01599 TRANSFAC - 153599455 153599462 5.0E-06 ATAAACAA 8 V_EGR1_02_M01972 TRANSFAC - 153599492 153599502 7.0E-06 TGTGTGGGCGG 11 V_HOXD13_01_M01404 TRANSFAC - 153603742 153603757 1.0E-06 AGTCCAATAAAACCTC 16 V_LDSPOLYA_B_M00317 TRANSFAC + 153598115 153598130 7.0E-06 GGACTGTGTTTTCTCT 16 V_LDSPOLYA_B_M00317 TRANSFAC + 153598117 153598132 8.0E-06 ACTGTGTTTTCTCTTG 16 V_NKX62_Q2_M00489 TRANSFAC - 153603804 153603815 4.0E-06 TAAATAAATATG 12 V_MEF2A_Q6_M02024 TRANSFAC - 153602596 153602605 5.0E-06 TATTTTTACC 10 V_PAX5_02_M00144 TRANSFAC + 153603611 153603638 1.0E-06 AAAGAAGAATGTGGAGCATGTCAGTAGT 28 V_HOXB13_01_M01467 TRANSFAC - 153603742 153603757 1.0E-06 AGTCCAATAAAACCTC 16 V_FOXO1_02_M00474 TRANSFAC + 153599452 153599465 6.0E-06 AGCTTGTTTATGTT 14 V_ZBP89_Q4_M01816 TRANSFAC - 153599885 153599894 4.0E-06 CCCTCCCCCA 10 V_RSRFC4_Q2_M00407 TRANSFAC + 153602594 153602610 9.0E-06 AGGGTAAAAATAGAGCC 17 V_HNF3_Q6_M00791 TRANSFAC - 153603804 153603816 5.0E-06 TTAAATAAATATG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 153603806 153603816 2.0E-06 TATTTATTTAA 11 V_REST_01_M01256 TRANSFAC - 153600180 153600201 9.0E-06 AACGAGATCTGTCCAGGCAGCT 22 V_HBP1_03_M02762 TRANSFAC + 153603585 153603600 5.0E-06 TAACTGAATGAACAAA 16 V_GR_Q6_M00192 TRANSFAC + 153597771 153597789 2.0E-06 GAGACTCACTGTGTTCAAG 19 V_HFH1_01_M00129 TRANSFAC + 153599453 153599464 7.0E-06 GCTTGTTTATGT 12 V_ARID3A_04_M02735 TRANSFAC - 153603804 153603820 6.0E-06 GTGGTTAAATAAATATG 17 V_TBX5_01_M01019 TRANSFAC + 153600048 153600059 5.0E-06 GGAGGTGTCAAA 12 V_SOX17_04_M02904 TRANSFAC + 153597792 153597808 2.0E-06 GTCCATATTCACACACT 17 V_FREAC2_01_M00290 TRANSFAC - 153599452 153599467 0.0E+00 CCAACATAAACAAGCT 16 V_HFH8_01_M00294 TRANSFAC + 153603803 153603815 8.0E-06 GCATATTTATTTA 13 V_ZFP105_04_M02931 TRANSFAC - 153603804 153603820 2.0E-06 GTGGTTAAATAAATATG 17 V_AP4_01_M00005 TRANSFAC - 153599823 153599840 9.0E-06 AGCAACAGCGCGTGCAGG 18 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 153602651 153602659 8.0E-06 GAGGGTGGG 9 V_FOXO3_01_M00477 TRANSFAC + 153599452 153599465 3.0E-06 AGCTTGTTTATGTT 14 V_SRF_01_M00152 TRANSFAC - 153598087 153598104 5.0E-06 CTTCACATATATGGAAAC 18 V_RSRFC4_01_M00026 TRANSFAC - 153602594 153602609 2.0E-06 GCTCTATTTTTACCCT 16 V_PLZF_02_M01075 TRANSFAC + 153599437 153599465 9.0E-06 GTTGTTTGTCTCCAAAGCTTGTTTATGTT 29 V_SIX4_01_M01374 TRANSFAC - 153600046 153600062 2.0E-06 AAATTTGACACCTCCGG 17 V_ZFP281_01_M01597 TRANSFAC + 153599885 153599895 9.0E-06 TGGGGGAGGGA 11 V_SRF_Q5_01_M00922 TRANSFAC - 153598086 153598100 2.0E-06 ACATATATGGAAACT 15 V_SRF_Q4_M00810 TRANSFAC - 153598084 153598101 0.0E+00 CACATATATGGAAACTGA 18 V_HSF_Q6_M00641 TRANSFAC - 153598159 153598171 5.0E-06 TTCCAGGAGATTC 13 V_HFH3_01_M00289 TRANSFAC + 153599453 153599465 8.0E-06 GCTTGTTTATGTT 13 V_HFH3_01_M00289 TRANSFAC + 153603803 153603815 0.0E+00 GCATATTTATTTA 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 153600725 153600742 3.0E-06 GGAACGGGGCAAGCAAGG 18 V_ZIC3_04_M02837 TRANSFAC + 153599755 153599769 8.0E-06 AACCCCCTGGGGTGC 15 V_ZIC1_04_M02835 TRANSFAC + 153599755 153599768 5.0E-06 AACCCCCTGGGGTG 14 V_SMAD3_Q6_M00701 TRANSFAC + 153599386 153599394 3.0E-06 TGTCTGTCT 9 V_YY1_01_M00059 TRANSFAC + 153597789 153597805 8.0E-06 GGAGTCCATATTCACAC 17 V_FOXO1_01_M00473 TRANSFAC - 153599454 153599463 2.0E-06 CATAAACAAG 10 V_DR3_Q4_M00966 TRANSFAC - 153599423 153599443 4.0E-06 AAACAACCTTATGACCTGTGA 21 V_SOX15_04_M02903 TRANSFAC + 153597889 153597903 2.0E-06 GTCGATGAAATTTAA 15 V_FOXO4_01_M00472 TRANSFAC - 153599452 153599462 1.0E-06 ATAAACAAGCT 11 V_MAFK_04_M02880 TRANSFAC + 153603722 153603736 8.0E-06 GTAGAAAGTGCACCG 15 V_HOXD10_01_M01375 TRANSFAC - 153603741 153603757 5.0E-06 AGTCCAATAAAACCTCA 17 V_BRF1_01_M01747 TRANSFAC + 153603758 153603770 4.0E-06 GGGTTCAAATTCC 13 V_COUP_DR1_Q6_M00765 TRANSFAC - 153599420 153599432 4.0E-06 TGACCTGTGAGTC 13 V_ZIC2_04_M02836 TRANSFAC + 153599755 153599769 8.0E-06 AACCCCCTGGGGTGC 15 V_SMAD1_01_M01590 TRANSFAC + 153603592 153603603 9.0E-06 ATGAACAAAAGC 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.