Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DDI2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6248 regulatory solute carrier protein, family 1, member 1 chr1 + 15981363 - 15986863 15986363 Transcription Factor Binding Sites   Download all TFBS in the DDI2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 15983750 15983767 2.0E-06 GATGTAAATAATGGTAAA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 15983750 15983767 8.0E-06 TTTACCATTATTTACATC 18 MYF6_bHLH_full_dimeric_10_1 SELEX - 15981937 15981946 6.0E-06 AACAAGTGTT 10 SOX2_HMG_full_dimeric_17_1 SELEX - 15988939 15988955 9.0E-06 TTTCACTTGCATTGTAA 17 FOXF2_MA0030.1 JASPAR + 15983758 15983771 2.0E-06 TAATGGTAAACATC 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 15983753 15983769 0.0E+00 GTAAATAATGGTAAACA 17 HSF1_HSF_full_trimeric_13_1 SELEX + 15989163 15989175 6.0E-06 TTCTAGACTCTTC 13 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 15983174 15983185 3.0E-06 TCTATAAATACC 12 FOXD1_MA0031.1 JASPAR + 15983763 15983770 7.0E-06 GTAAACAT 8 TBP_MA0108.2 JASPAR - 15983170 15983184 6.0E-06 CTATAAATACCTGGT 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 15983174 15983185 6.0E-06 TCTATAAATACC 12 Sox1_HMG_DBD_dimeric_13_1 SELEX - 15988941 15988953 1.0E-06 TCACTTGCATTGT 13 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 15983754 15983769 3.0E-06 TAAATAATGGTAAACA 16 MEF2B_MADS_full_dimeric_12_1 SELEX - 15983174 15983185 4.0E-06 TCTATAAATACC 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 15983754 15983769 3.0E-06 TAAATAATGGTAAACA 16 EOMES_TBX_DBD_monomeric_13_1 SELEX + 15989228 15989240 6.0E-06 TAAGTGTGATAAC 13 HSF4_HSF_DBD_trimeric_13_1 SELEX + 15989163 15989175 5.0E-06 TTCTAGACTCTTC 13 SOX14_HMG_DBD_dimeric_13_1 SELEX - 15988941 15988953 1.0E-06 TCACTTGCATTGT 13 SOX14_HMG_DBD_dimeric_12_1 SELEX - 15988942 15988953 3.0E-06 TCACTTGCATTG 12 EN1_homeodomain_full_dimeric_14_1 SELEX - 15989111 15989124 1.0E-05 TAATTCCACCATTA 14 Stat3_MA0144.1 JASPAR + 15989176 15989185 6.0E-06 TGCCAGGAAG 10 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 15983752 15983765 7.0E-06 TGTAAATAATGGTA 14 FOXB1_forkhead_full_monomeric_9_1 SELEX + 15983752 15983760 4.0E-06 TGTAAATAA 9 ETV6_ETS_full_dimeric_15_1 SELEX - 15983734 15983748 3.0E-06 GAGGAAATGGAAGCA 15 Sox1_HMG_DBD_dimeric_15_1 SELEX - 15988940 15988954 4.0E-06 TTCACTTGCATTGTA 15 ELF5_MA0136.1 JASPAR + 15989155 15989163 2.0E-06 TATTTCCTT 9 TBX1_TBX_DBD_dimeric_20_1 SELEX + 15989217 15989236 1.0E-05 GAGTGAAATACTAAGTGTGA 20 V_SPI1_01_M01203 TRANSFAC + 15983668 15983684 9.0E-06 AACAACAGGAACTAAGA 17 V_CDX2_Q5_01_M01659 TRANSFAC - 15983175 15983185 3.0E-06 TCTATAAATAC 11 V_HSF1_Q6_M01023 TRANSFAC + 15989175 15989191 2.0E-06 CTGCCAGGAAGTTCTTC 17 V_YY1_02_M00069 TRANSFAC - 15983801 15983820 9.0E-06 AAAAGACCATCTTTCCTCCT 20 V_FOXA2_04_M02749 TRANSFAC + 15983748 15983764 3.0E-06 CTGATGTAAATAATGGT 17 V_XPF1_Q6_M00684 TRANSFAC + 15983664 15983673 4.0E-06 TCTGAACAAC 10 V_MMEF2_Q6_M00405 TRANSFAC + 15981944 15981959 8.0E-06 GTTTCTAAAAAAAAAA 16 V_MMEF2_Q6_M00405 TRANSFAC - 15983173 15983188 1.0E-06 GTGTCTATAAATACCT 16 V_MEIS1AHOXA9_01_M00420 TRANSFAC + 15983711 15983724 2.0E-06 TGACAGATTTTCAG 14 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 15989187 15989200 8.0E-06 TGAGCGTTTGAAGA 14 V_CEBP_C_M00201 TRANSFAC - 15983089 15983106 3.0E-06 TGAATTAGGAAACAGACA 18 V_NERF_Q2_M00531 TRANSFAC + 15983719 15983736 3.0E-06 TTTCAGGAAGCACTCTGC 18 V_PU1_Q4_M01172 TRANSFAC - 15983669 15983687 9.0E-06 AAGTCTTAGTTCCTGTTGT 19 V_TCFAP2E_04_M02926 TRANSFAC + 15981945 15981958 6.0E-06 TTTCTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 15981946 15981959 0.0E+00 TTCTAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 15981947 15981960 1.0E-05 TCTAAAAAAAAAAA 14 V_MEF2A_Q6_M02024 TRANSFAC + 15983176 15983185 1.0E-06 TATTTATAGA 10 V_ETS_Q4_M00771 TRANSFAC - 15989179 15989190 6.0E-06 AAGAACTTCCTG 12 V_TRF1_01_M01237 TRANSFAC + 15989058 15989072 7.0E-06 CTAGAGTTTGGGTTT 15 V_ELF4_04_M02850 TRANSFAC + 15981944 15981960 0.0E+00 GTTTCTAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 15981945 15981961 0.0E+00 TTTCTAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC + 15981946 15981962 3.0E-06 TTCTAAAAAAAAAAACC 17 V_ELF4_04_M02850 TRANSFAC + 15981947 15981963 0.0E+00 TCTAAAAAAAAAAACCA 17 V_ELF4_04_M02850 TRANSFAC + 15981948 15981964 3.0E-06 CTAAAAAAAAAAACCAC 17 V_TCF3_04_M02816 TRANSFAC - 15983741 15983757 5.0E-06 TTTACATCAGAGGAAAT 17 V_FREAC3_01_M00291 TRANSFAC + 15983748 15983763 3.0E-06 CTGATGTAAATAATGG 16 V_PR_01_M00954 TRANSFAC - 15988974 15989000 6.0E-06 GAATTATGGTTGTTCTGTTCTTTTAAG 27 V_ZFP105_03_M02827 TRANSFAC + 15981946 15981960 4.0E-06 TTCTAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 15981947 15981961 5.0E-06 TCTAAAAAAAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC + 15981949 15981963 5.0E-06 TAAAAAAAAAAACCA 15 V_SREBP1_01_M00220 TRANSFAC + 15982024 15982034 8.0E-06 GATCACCTGAG 11 V_TATA_01_M00252 TRANSFAC - 15983170 15983184 6.0E-06 CTATAAATACCTGGT 15 V_XFD3_01_M00269 TRANSFAC + 15983760 15983773 5.0E-06 ATGGTAAACATCAG 14 V_DOBOX4_01_M01359 TRANSFAC + 15983178 15983194 6.0E-06 TTTATAGACACCATGTT 17 V_RSRFC4_Q2_M00407 TRANSFAC + 15983172 15983188 4.0E-06 CAGGTATTTATAGACAC 17 V_TBX5_02_M01020 TRANSFAC - 15989089 15989098 1.0E-06 TGAGGTGTTA 10 V_HNF3A_01_M01261 TRANSFAC + 15983751 15983760 9.0E-06 ATGTAAATAA 10 V_MEF2_04_M00233 TRANSFAC + 15981941 15981962 0.0E+00 CTTGTTTCTAAAAAAAAAAACC 22 V_SPIB_01_M01204 TRANSFAC + 15983668 15983684 3.0E-06 AACAACAGGAACTAAGA 17 V_TCF7_03_M02817 TRANSFAC - 15983741 15983757 2.0E-06 TTTACATCAGAGGAAAT 17 V_FREAC2_01_M00290 TRANSFAC + 15983758 15983773 2.0E-06 TAATGGTAAACATCAG 16 V_GATA1_05_M00346 TRANSFAC + 15989084 15989093 1.0E-06 ACTGATAACA 10 V_MTF1_06_M02882 TRANSFAC + 15981946 15981959 8.0E-06 TTCTAAAAAAAAAA 14 V_TBP_01_M00471 TRANSFAC - 15983176 15983183 4.0E-06 TATAAATA 8 V_FOXL1_04_M02753 TRANSFAC + 15983748 15983764 2.0E-06 CTGATGTAAATAATGGT 17 V_TCF7_04_M02921 TRANSFAC - 15981942 15981956 1.0E-06 TTTTTTTAGAAACAA 15 V_DMRT7_01_M01151 TRANSFAC + 15989055 15989068 1.0E-05 TTGCTAGAGTTTGG 14 V_MTATA_B_M00320 TRANSFAC - 15983170 15983186 8.0E-06 GTCTATAAATACCTGGT 17 V_RSRFC4_01_M00026 TRANSFAC - 15983172 15983187 5.0E-06 TGTCTATAAATACCTG 16 V_T3RBETA_Q6_01_M02119 TRANSFAC + 15982023 15982039 1.0E-06 GGATCACCTGAGGTCAG 17 V_ETS1_B_M00339 TRANSFAC + 15989178 15989192 5.0E-06 CCAGGAAGTTCTTCA 15 V_SRF_06_M02916 TRANSFAC + 15981944 15981960 1.0E-06 GTTTCTAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 15981945 15981961 1.0E-06 TTTCTAAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC + 15981946 15981962 2.0E-06 TTCTAAAAAAAAAAACC 17 V_SRF_06_M02916 TRANSFAC + 15981947 15981963 0.0E+00 TCTAAAAAAAAAAACCA 17 V_SRF_06_M02916 TRANSFAC + 15981948 15981964 0.0E+00 CTAAAAAAAAAAACCAC 17 V_HSF2_02_M01244 TRANSFAC - 15989163 15989175 3.0E-06 GAAGAGTCTAGAA 13 V_SATB1_01_M01232 TRANSFAC - 15981942 15981953 4.0E-06 TTTTAGAAACAA 12 V_HOXD8_01_M01432 TRANSFAC + 15983750 15983766 7.0E-06 GATGTAAATAATGGTAA 17 V_HOXD8_01_M01432 TRANSFAC - 15989097 15989113 9.0E-06 TTAGTCATTAAGGGTTG 17 V_PR_02_M00957 TRANSFAC - 15988974 15989000 1.0E-05 GAATTATGGTTGTTCTGTTCTTTTAAG 27 V_MEF2A_05_M01301 TRANSFAC + 15983173 15983184 3.0E-06 AGGTATTTATAG 12 V_ELF5_04_M02241 TRANSFAC + 15989155 15989163 2.0E-06 TATTTCCTT 9 V_TCF3_05_M02920 TRANSFAC + 15981945 15981959 2.0E-06 TTTCTAAAAAAAAAA 15 V_SMAD_Q6_M00792 TRANSFAC + 15983183 15983191 3.0E-06 AGACACCAT 9 V_FOXK1_03_M02752 TRANSFAC + 15983748 15983764 4.0E-06 CTGATGTAAATAATGGT 17 V_FOXK1_03_M02752 TRANSFAC + 15983758 15983774 9.0E-06 TAATGGTAAACATCAGC 17 V_SPI1_02_M02043 TRANSFAC - 15989155 15989164 8.0E-06 AAAGGAAATA 10 V_T3RALPHA_Q6_M01724 TRANSFAC + 15982029 15982039 5.0E-06 CCTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.