Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPS4Y1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6192 ribosomal protein S4, Y-linked 1 chrY + 2704622 - 2710122 2709622 Transcription Factor Binding Sites   Download all TFBS in the RPS4Y1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR - 2706258 2706269 6.0E-06 TGTTTACTGAGC 12 MYF6_bHLH_full_dimeric_10_1 SELEX + 2706121 2706130 3.0E-06 AACAGTTGTT 10 MYF6_bHLH_full_dimeric_10_1 SELEX - 2706121 2706130 1.0E-06 AACAACTGTT 10 IRF7_IRF_DBD_dimeric_14_1 SELEX + 2709499 2709512 1.0E-06 CAGAAACTGAAAAT 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 2709479 2709490 3.0E-06 TTACAGGTGTCA 12 TBR1_TBX_DBD_monomeric_10_1 SELEX - 2709924 2709933 6.0E-06 ACGTGTGAAA 10 FOXA1_MA0148.1 JASPAR - 2706259 2706269 7.0E-06 TGTTTACTGAG 11 IRF8_IRF_full_dimeric_14_1 SELEX + 2709499 2709512 5.0E-06 CAGAAACTGAAAAT 14 IRF8_IRF_full_dimeric_14_1 SELEX + 2709558 2709571 6.0E-06 AAGAAACCGGAACT 14 ZNF435_C2H2_full_dimeric_18_1 SELEX - 2706254 2706271 0.0E+00 TGTGTTTACTGAGCACTT 18 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 2709865 2709874 9.0E-06 CTCACGTGAC 10 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 2709479 2709490 3.0E-06 TTACAGGTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 2709479 2709490 5.0E-06 TTACAGGTGTCA 12 SPIB_ETS_DBD_monomeric_14_1 SELEX + 2709559 2709572 2.0E-06 AGAAACCGGAACTA 14 IRF1_MA0050.1 JASPAR + 2706224 2706235 2.0E-06 AAAAGTGAAAAC 12 IRF1_MA0050.1 JASPAR + 2709501 2709512 7.0E-06 GAAACTGAAAAT 12 IRF1_MA0050.1 JASPAR - 2709742 2709753 2.0E-06 AAAAGTGAAACA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 2709479 2709490 8.0E-06 TTACAGGTGTCA 12 EOMES_TBX_DBD_monomeric_13_1 SELEX - 2709922 2709934 1.0E-06 AACGTGTGAAAAT 13 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 2708937 2708950 2.0E-06 ATATACAAAAAACA 14 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 2709865 2709874 7.0E-06 CTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 2709865 2709874 8.0E-06 CTCACGTGAC 10 TBR1_TBX_full_monomeric_11_1 SELEX - 2709924 2709934 9.0E-06 AACGTGTGAAA 11 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 2709865 2709874 5.0E-06 CTCACGTGAC 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 2706119 2706132 4.0E-06 GAAACAGTTGTTAT 14 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 2709865 2709874 8.0E-06 CTCACGTGAC 10 TBX2_TBX_full_monomeric_11_1 SELEX - 2709924 2709934 4.0E-06 AACGTGTGAAA 11 IRF9_IRF_full_trimeric_15_1 SELEX + 2709498 2709512 1.0E-05 TCAGAAACTGAAAAT 15 IRF9_IRF_full_trimeric_15_1 SELEX + 2709557 2709571 7.0E-06 TAAGAAACCGGAACT 15 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 2709865 2709874 6.0E-06 CTCACGTGAC 10 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 2709479 2709490 3.0E-06 TTACAGGTGTCA 12 NR3C1_MA0113.1 JASPAR - 2709631 2709648 9.0E-06 GAAGAGAATCTGTTCTTT 18 IRF4_IRF_full_dimeric_15_1 SELEX + 2709499 2709513 4.0E-06 CAGAAACTGAAAATG 15 IRF4_IRF_full_dimeric_15_1 SELEX + 2709558 2709572 6.0E-06 AAGAAACCGGAACTA 15 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 2709478 2709491 7.0E-06 TTTACAGGTGTCAG 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 2706253 2706266 1.0E-05 TTACTGAGCACTTA 14 IRF5_IRF_full_dimeric_14_1 SELEX + 2709499 2709512 3.0E-06 CAGAAACTGAAAAT 14 SPI1_ETS_full_monomeric_14_1 SELEX + 2709559 2709572 2.0E-06 AGAAACCGGAACTA 14 IRF3_IRF_full_trimeric_21_1 SELEX + 2709552 2709572 3.0E-06 AAGAATAAGAAACCGGAACTA 21 POU3F3_POU_DBD_dimeric_12_1 SELEX + 2709552 2709563 5.0E-06 AAGAATAAGAAA 12 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 2709865 2709874 6.0E-06 GTCACGTGAG 10 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 2709479 2709490 9.0E-06 TGACACCTGTAA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 2709479 2709490 4.0E-06 TTACAGGTGTCA 12 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 2709865 2709874 2.0E-06 CTCACGTGAC 10 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 2708937 2708950 1.0E-06 ATATACAAAAAACA 14 V_SPI1_01_M01203 TRANSFAC + 2709559 2709575 3.0E-06 AGAAACCGGAACTAAAC 17 V_ELK1_04_M01165 TRANSFAC + 2709562 2709572 9.0E-06 AACCGGAACTA 11 V_FLI1_Q6_M01208 TRANSFAC - 2709587 2709597 3.0E-06 CAGGAAGTCAG 11 V_ZEC_01_M01081 TRANSFAC - 2709020 2709032 8.0E-06 CTATGTAAGTTGT 13 V_EOMES_03_M02747 TRANSFAC - 2709921 2709937 3.0E-06 TTCAACGTGTGAAAATA 17 V_IRF_Q6_01_M00972 TRANSFAC + 2706224 2706234 0.0E+00 AAAAGTGAAAA 11 V_IRF_Q6_01_M00972 TRANSFAC + 2709501 2709511 2.0E-06 GAAACTGAAAA 11 V_IRF_Q6_01_M00972 TRANSFAC - 2709743 2709753 0.0E+00 AAAAGTGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 2706222 2706237 1.0E-06 TGAAAAGTGAAAACGC 16 V_IRF2_Q6_M01882 TRANSFAC + 2709499 2709514 5.0E-06 CAGAAACTGAAAATGC 16 V_IRF2_Q6_M01882 TRANSFAC - 2709740 2709755 5.0E-06 CGAAAAGTGAAACATC 16 V_SOX11_04_M02899 TRANSFAC + 2709054 2709067 5.0E-06 TGAATTGTTTTGCA 14 V_FOXJ1_03_M02750 TRANSFAC + 2706260 2706275 6.0E-06 TCAGTAAACACATCAA 16 V_GM497_04_M02864 TRANSFAC + 2708997 2709012 8.0E-06 GACCACACACACGCCT 16 V_ZFP691_03_M02833 TRANSFAC + 2706250 2706266 5.0E-06 GAATAAGTGCTCAGTAA 17 V_NR3C1_01_M02219 TRANSFAC - 2709631 2709648 9.0E-06 GAAGAGAATCTGTTCTTT 18 V_BARBIE_01_M00238 TRANSFAC - 2706077 2706091 2.0E-06 ATTAAAAGCTGAAAA 15 V_SOX7_03_M02807 TRANSFAC - 2709048 2709069 1.0E-06 CCTGCAAAACAATTCACTTTTA 22 V_PR_Q2_M00960 TRANSFAC + 2709630 2709639 9.0E-06 AAAAGAACAG 10 V_ZFP105_03_M02827 TRANSFAC - 2708933 2708947 2.0E-06 TACAAAAAACAACCA 15 V_IRF2_01_M00063 TRANSFAC + 2706223 2706235 1.0E-06 GAAAAGTGAAAAC 13 V_IRF2_01_M00063 TRANSFAC - 2709742 2709754 1.0E-06 GAAAAGTGAAACA 13 V_PXRRXR_02_M01153 TRANSFAC - 2709537 2709544 1.0E-05 AGAGTTCA 8 V_IRF3_Q3_M01279 TRANSFAC - 2706225 2706237 9.0E-06 GCGTTTTCACTTT 13 V_IRF_Q6_M00772 TRANSFAC - 2706224 2706238 1.0E-06 TGCGTTTTCACTTTT 15 V_IRF_Q6_M00772 TRANSFAC + 2709739 2709753 5.0E-06 CGATGTTTCACTTTT 15 V_STAT5A_02_M00460 TRANSFAC - 2709512 2709535 6.0E-06 ATCCTGGAACTGAATTTCTTAGCA 24 V_ISRE_01_M00258 TRANSFAC - 2709552 2709566 5.0E-06 CGGTTTCTTATTCTT 15 V_ISRE_01_M00258 TRANSFAC + 2709741 2709755 9.0E-06 ATGTTTCACTTTTCG 15 V_OCT1_04_M00138 TRANSFAC - 2706085 2706107 1.0E-05 ATGGGTTAAGTTAAATATTAAAA 23 V_GR_Q6_M00192 TRANSFAC - 2709631 2709649 7.0E-06 GGAAGAGAATCTGTTCTTT 19 V_SPIB_01_M01204 TRANSFAC + 2709559 2709575 4.0E-06 AGAAACCGGAACTAAAC 17 V_TCF1_07_M02919 TRANSFAC + 2709906 2709919 1.0E-06 TTACCCGGATTAGC 14 V_OCT4_02_M01124 TRANSFAC - 2708940 2708954 7.0E-06 ATTGATATACAAAAA 15 V_OCT4_02_M01124 TRANSFAC + 2709057 2709071 5.0E-06 ATTGTTTTGCAGGTT 15 V_OCT4_02_M01124 TRANSFAC - 2709496 2709510 7.0E-06 TTTCAGTTTCTGATA 15 V_HNF4A_02_M02868 TRANSFAC - 2706030 2706045 5.0E-06 AACAAAAGTCCACCAA 16 V_FOXO1_Q5_M01216 TRANSFAC - 2708935 2708943 5.0E-06 AAAAACAAC 9 V_GR_Q6_02_M01836 TRANSFAC - 2709631 2709643 6.0E-06 GAATCTGTTCTTT 13 V_SOX15_03_M02799 TRANSFAC - 2709051 2709067 2.0E-06 TGCAAAACAATTCACTT 17 V_MTF1_06_M02882 TRANSFAC - 2708937 2708950 6.0E-06 ATATACAAAAAACA 14 V_STRA13_01_M00985 TRANSFAC + 2709863 2709876 2.0E-06 CCGTCACGTGAGTC 14 V_ZFP206_01_M01742 TRANSFAC - 2709007 2709017 4.0E-06 TGCGCAGGCGT 11 V_FOXA2_03_M02260 TRANSFAC - 2706258 2706269 6.0E-06 TGTTTACTGAGC 12 V_SIX4_01_M01374 TRANSFAC + 2709474 2709490 1.0E-06 ATAACTGACACCTGTAA 17 V_SOX21_04_M02907 TRANSFAC + 2709052 2709068 8.0E-06 AGTGAATTGTTTTGCAG 17 V_IRF1_Q6_01_M01881 TRANSFAC - 2706223 2706236 0.0E+00 CGTTTTCACTTTTC 14 V_IRF1_Q6_01_M01881 TRANSFAC - 2709500 2709513 0.0E+00 CATTTTCAGTTTCT 14 V_IRF1_Q6_01_M01881 TRANSFAC + 2709741 2709754 1.0E-06 ATGTTTCACTTTTC 14 V_IRC900814_03_M02766 TRANSFAC + 2709600 2709615 9.0E-06 GTTTACGACAACAGAC 16 V_SOX8_03_M02808 TRANSFAC + 2709051 2709067 6.0E-06 AAGTGAATTGTTTTGCA 17 V_EFC_Q6_M00626 TRANSFAC - 2708942 2708955 8.0E-06 AATTGATATACAAA 14 V_GSC_01_M01428 TRANSFAC - 2709907 2709923 3.0E-06 ATAAGCTAATCCGGGTA 17 V_IRF1_01_M00062 TRANSFAC + 2706223 2706235 0.0E+00 GAAAAGTGAAAAC 13 V_IRF1_01_M00062 TRANSFAC - 2709742 2709754 0.0E+00 GAAAAGTGAAACA 13 V_HOXC10_01_M01361 TRANSFAC - 2709597 2709612 9.0E-06 TGTTGTCGTAAACCGC 16 V_FOXO4_01_M00472 TRANSFAC - 2708933 2708943 8.0E-06 AAAAACAACCA 11 V_MAFK_04_M02880 TRANSFAC + 2708974 2708988 8.0E-06 TGAAAAATTCCAATG 15 V_SOX5_07_M02909 TRANSFAC + 2709051 2709067 1.0E-05 AAGTGAATTGTTTTGCA 17 V_ELK1_03_M01163 TRANSFAC + 2709562 2709572 4.0E-06 AACCGGAACTA 11 V_PPARA_01_M00242 TRANSFAC - 2709899 2709918 8.0E-06 CTAATCCGGGTAAAAAGCCA 20 V_OCT4_01_M01125 TRANSFAC - 2708941 2708955 9.0E-06 AATTGATATACAAAA 15 V_OTX3_01_M01403 TRANSFAC + 2709906 2709922 7.0E-06 TTACCCGGATTAGCTTA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.