Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPL37A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6168 ribosomal protein L37a chr2 + 217358519 - 217364019 217363519 Transcription Factor Binding Sites   Download all TFBS in the RPL37A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 217367436 217367451 4.0E-06 ATGCAAATTTAATTCG 16 NFE2_bZIP_DBD_dimeric_11_1 SELEX + 217360540 217360550 9.0E-06 AATGAGTCACT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 217360540 217360550 7.0E-06 AGTGACTCATT 11 MYBL2_MYB_DBD_dimeric_14_1 SELEX + 217362879 217362892 7.0E-06 GACTGTTAACTTTT 14 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 217360572 217360580 9.0E-06 TTAATAAAA 9 E2F4_E2F_DBD_dimeric_12_2 SELEX - 217363387 217363398 9.0E-06 TATGGCGACAAA 12 GABPA_MA0062.2 JASPAR - 217363517 217363527 7.0E-06 GCGGAAGTGGC 11 EN2_homeodomain_full_monomeric_10_1 SELEX - 217367387 217367396 1.0E-05 ACCAATTAGG 10 SRY_HMG_DBD_dimeric_15_1 SELEX - 217360580 217360594 6.0E-06 TATAATATCATTCTT 15 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 217367444 217367456 6.0E-06 TTAATTCGATAAG 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 217367444 217367456 5.0E-06 CTTATCGAATTAA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX - 217363275 217363285 5.0E-06 TGCATAAATCT 11 ZNF435_C2H2_full_dimeric_18_1 SELEX + 217360461 217360478 5.0E-06 AGGGTTTTCTGAACATTT 18 TBX20_TBX_DBD_dimeric_19_1 SELEX + 217363225 217363243 9.0E-06 AAGTGTTAGAATCACAAGC 19 TBP_MA0108.2 JASPAR - 217364657 217364671 1.0E-05 CTATAAAAGAGAACC 15 CUX1_CUT_DBD_dimeric_17_1 SELEX - 217367229 217367245 1.0E-06 GTCAATCTGAAATCAAT 17 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 217367444 217367456 6.0E-06 CTTATCGAATTAA 13 ISL2_homeodomain_DBD_monomeric_8_1 SELEX + 217367322 217367329 1.0E-05 GCACTTAA 8 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 217367444 217367456 2.0E-06 CTTATCGAATTAA 13 IRF5_IRF_full_monomeric_11_1 SELEX - 217363842 217363852 5.0E-06 CAACGAAACCA 11 IRF7_IRF_DBD_trimeric_17_1 SELEX + 217364645 217364661 7.0E-06 ATAGTGAAAATTGGTTC 17 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 217363023 217363034 5.0E-06 CAAACGATCATA 12 POU4F3_POU_DBD_monomeric_16_1 SELEX + 217367436 217367451 4.0E-06 ATGCAAATTTAATTCG 16 LEF1_HMG_DBD_monomeric_15_1 SELEX - 217367397 217367411 8.0E-06 ATAGATAAAAGACAT 15 ALX3_homeodomain_full_dimeric_13_1 SELEX - 217367444 217367456 5.0E-06 CTTATCGAATTAA 13 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX + 217363873 217363889 9.0E-06 AGGTCATATGTAATTCA 17 MAX_bHLH_DBD_dimer-of-dimers_17_1 SELEX + 217363877 217363893 7.0E-06 CATATGTAATTCACATG 17 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 217367444 217367456 5.0E-06 CTTATCGAATTAA 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 217367444 217367456 8.0E-06 CTTATCGAATTAA 13 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 217367400 217367411 9.0E-06 ATAGATAAAAGA 12 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 217362987 217363002 9.0E-06 ACCAGTTTGAAACTGT 16 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 217363584 217363600 4.0E-06 TAGGTCGCGGCGACATG 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 217367445 217367455 5.0E-06 TTATCGAATTA 11 TBX2_TBX_full_monomeric_11_1 SELEX - 217367308 217367318 7.0E-06 AAAGTGTCAAA 11 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 217367444 217367456 5.0E-06 CTTATCGAATTAA 13 CUX2_CUT_DBD_dimeric_18_1 SELEX - 217367448 217367465 9.0E-06 ATCCACATTCTTATCGAA 18 Nkx3-2_MA0122.1 JASPAR - 217367321 217367329 1.0E-05 TTAAGTGCA 9 FEV_MA0156.1 JASPAR - 217360520 217360527 1.0E-05 CAGGAAAT 8 JDP2_bZIP_full_dimeric_9_1 SELEX + 217360541 217360549 1.0E-05 ATGAGTCAC 9 Tp53_p53l_DBD_dimeric_17_1 SELEX - 217363878 217363894 6.0E-06 ACATGTGAATTACATAT 17 Tp53_p53l_DBD_dimeric_17_1 SELEX + 217363889 217363905 5.0E-06 ACATGTCGGTCACACGT 17 Tp53_p53l_DBD_dimeric_17_1 SELEX - 217363889 217363905 7.0E-06 ACGTGTGACCGACATGT 17 TBX20_TBX_DBD_monomeric_15_1 SELEX - 217367307 217367321 6.0E-06 ATAAAAGTGTCAAAG 15 FOXC1_MA0032.1 JASPAR + 217364121 217364128 7.0E-06 AGTAAGTA 8 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 217367175 217367192 5.0E-06 GTTGCAAACGTCTGCAAT 18 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 217367175 217367192 4.0E-06 ATTGCAGACGTTTGCAAC 18 ETV6_ETS_full_monomeric_10_1 SELEX - 217363519 217363528 1.0E-06 AGCGGAAGTG 10 TP53_MA0106.1 JASPAR - 217363357 217363376 8.0E-06 AGAAGCATGTCCGGATTATT 20 Sox3_HMG_DBD_dimeric_17_1 SELEX + 217360579 217360595 6.0E-06 AAAGAATGATATTATAA 17 RORA_1_MA0071.1 JASPAR + 217363869 217363878 4.0E-06 AACTAGGTCA 10 Nobox_MA0125.1 JASPAR + 217367389 217367396 7.0E-06 TAATTGGT 8 POU4F1_POU_DBD_monomeric_14_1 SELEX + 217367436 217367449 4.0E-06 ATGCAAATTTAATT 14 RORA_2_MA0072.1 JASPAR + 217363866 217363879 0.0E+00 GAAAACTAGGTCAT 14 V_CEBPG_Q6_M00622 TRANSFAC + 217360573 217360585 1.0E-06 TTTATTAAAGAAT 13 V_CEBPG_Q6_M00622 TRANSFAC + 217367230 217367242 2.0E-06 TTGATTTCAGATT 13 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 217367310 217367323 0.0E+00 TGACACTTTTATGC 14 V_OBOX6_01_M01445 TRANSFAC - 217363356 217363370 8.0E-06 ATGTCCGGATTATTT 15 V_SPI1_01_M01203 TRANSFAC - 217360562 217360578 7.0E-06 AATAAAAGGAACCAGGG 17 V_AP1_Q2_M00173 TRANSFAC - 217360540 217360550 4.0E-06 AGTGACTCATT 11 V_MEIS1_02_M01419 TRANSFAC - 217367238 217367253 3.0E-06 AACCATCTGTCAATCT 16 V_DBX1_01_M01483 TRANSFAC - 217360571 217360587 9.0E-06 TCATTCTTTAATAAAAG 17 V_PREP1_01_M01459 TRANSFAC - 217367238 217367253 1.0E-06 AACCATCTGTCAATCT 16 V_LEF1_04_M02774 TRANSFAC + 217367396 217367412 1.0E-05 TATGTCTTTTATCTATC 17 V_ATF5_01_M01295 TRANSFAC + 217363560 217363570 3.0E-06 TCTCTTCCTTT 11 V_SOX40_04_M02908 TRANSFAC + 217360585 217360600 5.0E-06 TGATATTATAAACCAA 16 V_SOX40_04_M02908 TRANSFAC - 217360585 217360600 5.0E-06 TTGGTTTATAATATCA 16 V_GATA2_02_M00348 TRANSFAC - 217367402 217367411 9.0E-06 ATAGATAAAA 10 V_CEBP_Q3_M00770 TRANSFAC + 217367171 217367182 4.0E-06 AAATGTTGCAAA 12 V_HMGIY_Q3_M01010 TRANSFAC - 217367260 217367274 0.0E+00 AATTCATTTTTTTGT 15 V_RORA1_01_M00156 TRANSFAC + 217363867 217363879 0.0E+00 AAAACTAGGTCAT 13 V_NKX29_01_M01352 TRANSFAC + 217367316 217367332 2.0E-06 TTTTATGCACTTAATTC 17 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 217362881 217362892 3.0E-06 AAAAGTTAACAG 12 V_DEAF1_01_M01001 TRANSFAC - 217363732 217363756 0.0E+00 CCGCCTTGGGGAGCTTCCGACAATG 25 V_GATA3_03_M00351 TRANSFAC + 217360583 217360592 7.0E-06 AATGATATTA 10 V_IK_Q5_M01169 TRANSFAC - 217363217 217363226 3.0E-06 TTTGGGAGGC 10 V_SATB1_Q3_M01723 TRANSFAC + 217360577 217360592 7.0E-06 TTAAAGAATGATATTA 16 V_MAFB_03_M02879 TRANSFAC - 217363275 217363289 8.0E-06 GAAGTGCATAAATCT 15 V_MAFB_03_M02879 TRANSFAC + 217363440 217363454 4.0E-06 CAATTGCAAACATTT 15 V_MAFB_03_M02879 TRANSFAC - 217367314 217367328 2.0E-06 TAAGTGCATAAAAGT 15 V_PROP1_01_M01294 TRANSFAC + 217367445 217367455 7.0E-06 TAATTCGATAA 11 V_RORA_Q4_M01138 TRANSFAC + 217363868 217363878 2.0E-06 AAACTAGGTCA 11 V_SP100_03_M02809 TRANSFAC - 217363858 217363871 8.0E-06 GTTTTCCCTAAATT 14 V_POU2F3_01_M01476 TRANSFAC + 217367432 217367447 3.0E-06 AAGGATGCAAATTTAA 16 V_PPAR_DR1_Q2_M00763 TRANSFAC + 217362978 217362990 1.0E-05 AGAACTCTGACCA 13 V_SP1_02_M01303 TRANSFAC + 217363758 217363768 8.0E-06 GGGGCGGGGGC 11 V_PU1_Q4_M01172 TRANSFAC - 217363134 217363152 2.0E-06 CTCATTTATTTCCCCCTCT 19 V_LYF1_01_M00141 TRANSFAC - 217363218 217363226 9.0E-06 TTTGGGAGG 9 V_HELIOSA_01_M01003 TRANSFAC + 217363860 217363870 1.0E-06 TTTAGGGAAAA 11 V_TGIF2_01_M01407 TRANSFAC - 217367238 217367253 1.0E-06 AACCATCTGTCAATCT 16 V_AP1_Q6_M00174 TRANSFAC - 217360540 217360550 2.0E-06 AGTGACTCATT 11 V_WT1_Q6_01_M02036 TRANSFAC - 217363760 217363769 4.0E-06 CGCCCCCGCC 10 V_RPC155_01_M01798 TRANSFAC - 217363193 217363208 0.0E+00 TCAGGAGTTCGAGACC 16 V_SPIC_01_M02042 TRANSFAC - 217363519 217363528 9.0E-06 AGCGGAAGTG 10 V_SOX7_03_M02807 TRANSFAC + 217360573 217360594 5.0E-06 TTTATTAAAGAATGATATTATA 22 V_TCF3_04_M02816 TRANSFAC - 217367396 217367412 9.0E-06 GATAGATAAAAGACATA 17 V_MEIS2_01_M01488 TRANSFAC - 217367238 217367253 3.0E-06 AACCATCTGTCAATCT 16 V_TGIF_02_M01346 TRANSFAC + 217367237 217367253 2.0E-06 CAGATTGACAGATGGTT 17 V_ZFP105_03_M02827 TRANSFAC + 217367256 217367270 1.0E-05 AGTAACAAAAAAATG 15 V_ZFP410_03_M02832 TRANSFAC - 217367404 217367420 6.0E-06 GACTCTGGGATAGATAA 17 V_POLY_C_M00212 TRANSFAC - 217367454 217367471 1.0E-06 AAGTAAATCCACATTCTT 18 V_TATA_01_M00252 TRANSFAC - 217364657 217364671 1.0E-05 CTATAAAAGAGAACC 15 V_ZBED6_01_M01598 TRANSFAC + 217360504 217360515 1.0E-06 CAGGCTCGCCTT 12 V_KROX_Q6_M00982 TRANSFAC - 217363758 217363771 2.0E-06 GGCGCCCCCGCCCC 14 V_AP1_Q4_M00188 TRANSFAC - 217360540 217360550 3.0E-06 AGTGACTCATT 11 V_SP1_Q6_M00196 TRANSFAC + 217363756 217363768 9.0E-06 GAGGGGCGGGGGC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 217363752 217363765 1.0E-05 GGCGGAGGGGCGGG 14 V_TATA_C_M00216 TRANSFAC - 217364663 217364672 0.0E+00 TCTATAAAAG 10 V_SFPI1_04_M02896 TRANSFAC - 217360566 217360579 5.0E-06 TAATAAAAGGAACC 14 V_SFPI1_04_M02896 TRANSFAC + 217363857 217363870 8.0E-06 GAATTTAGGGAAAA 14 V_JUNDM2_04_M02876 TRANSFAC + 217360537 217360552 5.0E-06 TAGAATGAGTCACTTC 16 V_NFE4_Q5_M02105 TRANSFAC - 217364147 217364158 5.0E-06 CTCCCTCTCCTC 12 V_OCT1_04_M00138 TRANSFAC + 217367428 217367450 7.0E-06 CTTTAAGGATGCAAATTTAATTC 23 V_TAL1BETAE47_01_M00065 TRANSFAC + 217367240 217367255 3.0E-06 ATTGACAGATGGTTGT 16 V_GRE_C_M00205 TRANSFAC - 217360771 217360786 5.0E-06 GGCTCAAGCAGTCCTT 16 V_BBX_04_M02843 TRANSFAC - 217362877 217362893 3.0E-06 GAAAAGTTAACAGTCAC 17 V_TCF7_03_M02817 TRANSFAC - 217367396 217367412 5.0E-06 GATAGATAAAAGACATA 17 V_MEF2_Q6_01_M00941 TRANSFAC + 217367290 217367301 9.0E-06 AGTTATTTTAGG 12 V_TCF1_07_M02919 TRANSFAC - 217363357 217363370 1.0E-06 ATGTCCGGATTATT 14 V_SP1_01_M00008 TRANSFAC - 217363212 217363221 7.0E-06 GAGGCGGGGT 10 V_TGIF1_01_M03111 TRANSFAC + 217367237 217367253 2.0E-06 CAGATTGACAGATGGTT 17 V_AP1_Q2_01_M00924 TRANSFAC - 217360537 217360548 4.0E-06 TGACTCATTCTA 12 V_NKX23_01_M01457 TRANSFAC + 217367316 217367331 2.0E-06 TTTTATGCACTTAATT 16 V_EVI1_06_M00011 TRANSFAC + 217360493 217360501 9.0E-06 ACAAGATAC 9 V_NKX32_02_M01482 TRANSFAC + 217367317 217367333 7.0E-06 TTTATGCACTTAATTCA 17 V_ZFP691_04_M02937 TRANSFAC - 217360536 217360552 9.0E-06 GAAGTGACTCATTCTAG 17 V_TAL1BETAITF2_01_M00070 TRANSFAC + 217367240 217367255 9.0E-06 ATTGACAGATGGTTGT 16 V_GATA4_Q3_M00632 TRANSFAC - 217367398 217367409 1.0E-06 AGATAAAAGACA 12 V_TFIII_Q6_M00706 TRANSFAC + 217364151 217364159 6.0E-06 AGAGGGAGG 9 V_NEUROD_02_M01288 TRANSFAC + 217363032 217363043 6.0E-06 TTGCAGCTGGCC 12 V_GR_Q6_02_M01836 TRANSFAC + 217363046 217363058 9.0E-06 CAACTTGTTCTGG 13 V_AML2_Q3_01_M01854 TRANSFAC + 217363478 217363488 4.0E-06 CCAAACCATAG 11 V_ZFP187_04_M02934 TRANSFAC + 217360559 217360574 3.0E-06 GGGCCCTGGTTCCTTT 16 V_HAND1E47_01_M00222 TRANSFAC + 217364693 217364708 1.0E-05 GTGGGGATCTGGCACT 16 V_ISX_01_M01331 TRANSFAC - 217367384 217367399 6.0E-06 CATACCAATTAGGAGG 16 V_GABPBETA_Q3_M01876 TRANSFAC - 217363518 217363528 7.0E-06 AGCGGAAGTGG 11 V_MRG2_01_M01395 TRANSFAC - 217367238 217367253 3.0E-06 AACCATCTGTCAATCT 16 V_PKNOX2_01_M01411 TRANSFAC - 217367238 217367253 5.0E-06 AACCATCTGTCAATCT 16 V_OCT2_01_M01368 TRANSFAC + 217367432 217367447 4.0E-06 AAGGATGCAAATTTAA 16 V_AP1FJ_Q2_M00172 TRANSFAC - 217360540 217360550 3.0E-06 AGTGACTCATT 11 V_TAL1ALPHAE47_01_M00066 TRANSFAC + 217367240 217367255 7.0E-06 ATTGACAGATGGTTGT 16 V_NKX3A_02_M01383 TRANSFAC - 217367315 217367331 7.0E-06 AATTAAGTGCATAAAAG 17 V_HDX_01_M01333 TRANSFAC - 217367226 217367242 7.0E-06 AATCTGAAATCAATCCT 17 V_ZBTB4_04_M02929 TRANSFAC + 217367328 217367343 1.0E-05 AATTCACTGCCAATTT 16 V_TCF7_04_M02921 TRANSFAC + 217360585 217360599 3.0E-06 TGATATTATAAACCA 15 V_ZFP206_01_M01742 TRANSFAC - 217363544 217363554 1.0E-06 TGCGCAGGCGC 11 V_BDP1_01_M01796 TRANSFAC + 217363193 217363204 2.0E-06 GGTCTCGAACTC 12 V_FOXO3_01_M00477 TRANSFAC + 217363649 217363662 5.0E-06 TCCTTGTTTTCTTC 14 V_PBX_Q3_M00998 TRANSFAC + 217367228 217367239 4.0E-06 GATTGATTTCAG 12 V_SRF_06_M02916 TRANSFAC + 217367257 217367273 6.0E-06 GTAACAAAAAAATGAAT 17 V_SOX1_03_M02802 TRANSFAC - 217367263 217367278 2.0E-06 AGGCAATTCATTTTTT 16 V_HOMEZ_01_M01429 TRANSFAC + 217363022 217363038 2.0E-06 ATATGATCGTTTGCAGC 17 V_BARHL2_01_M01446 TRANSFAC - 217367385 217367400 6.0E-06 ACATACCAATTAGGAG 16 V_SOX15_04_M02903 TRANSFAC + 217367438 217367452 2.0E-06 GCAAATTTAATTCGA 15 V_SP1_Q2_01_M00933 TRANSFAC - 217363757 217363766 7.0E-06 CCCCGCCCCT 10 V_GATA5_03_M02756 TRANSFAC + 217367445 217367461 5.0E-06 TAATTCGATAAGAATGT 17 V_GATA6_04_M02757 TRANSFAC + 217367445 217367461 5.0E-06 TAATTCGATAAGAATGT 17 V_OBOX6_02_M03068 TRANSFAC - 217363356 217363370 8.0E-06 ATGTCCGGATTATTT 15 V_FEV_01_M02269 TRANSFAC - 217360520 217360527 1.0E-05 CAGGAAAT 8 V_DEC_Q1_M00997 TRANSFAC + 217364171 217364183 9.0E-06 ACCCAAGTGAGGC 13 V_GLIS2_04_M02863 TRANSFAC + 217360570 217360583 4.0E-06 CCTTTTATTAAAGA 14 V_SMAD_Q6_M00792 TRANSFAC + 217363726 217363734 3.0E-06 AGACACCAT 9 V_PAX4_04_M00380 TRANSFAC - 217364174 217364203 4.0E-06 ATAAAATACCTTGAAGTCAGGCCTCACTTG 30 V_RORA2_01_M00157 TRANSFAC + 217363867 217363879 0.0E+00 AAAACTAGGTCAT 13 V_PPARA_01_M00242 TRANSFAC - 217362884 217362903 2.0E-06 GAAGGCTGGGGAAAAGTTAA 20 V_PPARA_01_M00242 TRANSFAC + 217363866 217363885 2.0E-06 GAAAACTAGGTCATATGTAA 20 V_NANOG_02_M01247 TRANSFAC + 217367252 217367271 3.0E-06 TTGTAGTAACAAAAAAATGA 20 V_GATA1_06_M00347 TRANSFAC - 217367402 217367411 1.0E-06 ATAGATAAAA 10 V_OTX3_01_M01403 TRANSFAC - 217363354 217363370 1.0E-06 ATGTCCGGATTATTTCA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.