Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPL28 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6158 ribosomal protein L28 chr19 + 55892299 - 55897799 55897299 Transcription Factor Binding Sites   Download all TFBS in the RPL28 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP3_C2H2_DBD_monomeric_11_1 SELEX - 55898001 55898011 8.0E-06 TCCACGCCCAC 11 SOX4_HMG_DBD_dimeric_16_1 SELEX + 55896678 55896693 7.0E-06 AAACAGTTTAAGAGTT 16 MYF6_bHLH_full_dimeric_10_1 SELEX + 55896948 55896957 9.0E-06 AACAAATGTT 10 FLI1_ETS_full_monomeric_10_1 SELEX + 55896881 55896890 3.0E-06 ACCGGAAATA 10 ETV5_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 7.0E-06 ACCGGAAATA 10 ERG_ETS_full_monomeric_10_1 SELEX + 55896881 55896890 3.0E-06 ACCGGAAATA 10 ETV3_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 7.0E-06 ACCGGAAATA 10 En1_MA0027.1 JASPAR + 55897476 55897486 8.0E-06 AAGTTATTTTC 11 Zfp423_MA0116.1 JASPAR - 55896425 55896439 5.0E-06 CCACCCTAAGGGGGC 15 FEV_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 3.0E-06 ACCGGAAATA 10 TBX20_TBX_DBD_dimeric_19_1 SELEX + 55896477 55896495 4.0E-06 GGGTGTGACAGGCACACCA 19 TBX20_TBX_DBD_dimeric_19_1 SELEX - 55896477 55896495 5.0E-06 TGGTGTGCCTGTCACACCC 19 EWSR1-FLI1_MA0149.1 JASPAR - 55897397 55897414 4.0E-06 GGGGAGAAGGCAGGCAGA 18 ETV1_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 3.0E-06 ACCGGAAATA 10 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX + 55897587 55897599 8.0E-06 TGCCCTCAGGGGT 13 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX - 55897587 55897599 4.0E-06 ACCCCTGAGGGCA 13 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX + 55901917 55901929 6.0E-06 TGCCCTGGAGGCT 13 Sox17_HMG_DBD_dimeric_15_1 SELEX + 55896679 55896693 5.0E-06 AACAGTTTAAGAGTT 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 55896573 55896583 9.0E-06 ACATGCAAATC 11 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 55896948 55896961 3.0E-06 AACAAATGTTTGTT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 55896948 55896961 3.0E-06 AACAAACATTTGTT 14 TBX1_TBX_DBD_dimeric_19_1 SELEX + 55896477 55896495 3.0E-06 GGGTGTGACAGGCACACCA 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 55896477 55896495 2.0E-06 TGGTGTGCCTGTCACACCC 19 ETV2_ETS_DBD_monomeric_11_1 SELEX + 55896880 55896890 1.0E-06 GACCGGAAATA 11 ETV2_ETS_DBD_monomeric_11_1 SELEX + 55897249 55897259 7.0E-06 AAGCGGAAATG 11 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 55897576 55897592 4.0E-06 AGGTCGCTGTCTGCCCT 17 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX - 55897576 55897592 5.0E-06 AGGGCAGACAGCGACCT 17 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 55896948 55896961 7.0E-06 AACAAATGTTTGTT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 55896948 55896961 6.0E-06 AACAAACATTTGTT 14 ETS1_ETS_full_monomeric_10_1 SELEX + 55896881 55896890 1.0E-06 ACCGGAAATA 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 55897465 55897478 4.0E-06 TGTGAATTTTCAAG 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 55897465 55897478 4.0E-06 CTTGAAAATTCACA 14 Gfi_MA0038.1 JASPAR - 55898115 55898124 3.0E-06 AAAATCACAG 10 NFIX_NFI_full_monomeric_9_2 SELEX + 55896974 55896982 8.0E-06 TATGCCAAT 9 ETV4_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 1.0E-06 ACCGGAAATA 10 ELK4_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 3.0E-06 ACCGGAAATA 10 ELK1_ETS_full_dimeric_17_1 SELEX + 55897166 55897182 4.0E-06 AATTTTCGGCGGAAGCA 17 ELK1_ETS_full_dimeric_17_1 SELEX - 55897166 55897182 3.0E-06 TGCTTCCGCCGAAAATT 17 ELK4_MA0076.1 JASPAR + 55896881 55896889 7.0E-06 ACCGGAAAT 9 SOX18_HMG_full_dimeric_15_1 SELEX + 55896679 55896693 5.0E-06 AACAGTTTAAGAGTT 15 SOX7_HMG_full_dimeric_17_1 SELEX + 55896678 55896694 4.0E-06 AAACAGTTTAAGAGTTT 17 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX + 55897587 55897599 9.0E-06 TGCCCTCAGGGGT 13 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 55897587 55897599 5.0E-06 ACCCCTGAGGGCA 13 TBX15_TBX_DBD_dimeric_19_1 SELEX + 55896477 55896495 2.0E-06 GGGTGTGACAGGCACACCA 19 TBX15_TBX_DBD_dimeric_19_1 SELEX - 55896477 55896495 5.0E-06 TGGTGTGCCTGTCACACCC 19 ERF_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 3.0E-06 ACCGGAAATA 10 ELK1_ETS_full_monomeric_10_1 SELEX + 55896881 55896890 5.0E-06 ACCGGAAATA 10 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 55901917 55901929 6.0E-06 TGCCCTGGAGGCT 13 MAFG_bZIP_full_dimeric_21_1 SELEX + 55896991 55897011 8.0E-06 CAAGTGCTGGGTGAGCAATAC 21 GABPA_ETS_full_monomeric_10_1 SELEX + 55896881 55896890 5.0E-06 ACCGGAAATA 10 Elk3_ETS_DBD_monomeric_10_1 SELEX + 55896881 55896890 5.0E-06 ACCGGAAATA 10 REST_MA0138.2 JASPAR + 55895494 55895514 1.0E-06 TCCAGCGCCACGGCCAGCAGC 21 ETV6_ETS_full_dimeric_15_1 SELEX + 55897245 55897259 0.0E+00 GAGGAAGCGGAAATG 15 PLAG1_MA0163.1 JASPAR - 55897410 55897423 8.0E-06 GAGGCGCAAGGGGA 14 Sox3_HMG_DBD_dimeric_17_1 SELEX + 55896678 55896694 8.0E-06 AAACAGTTTAAGAGTTT 17 SOX9_HMG_full_dimeric_17_1 SELEX + 55896678 55896694 4.0E-06 AAACAGTTTAAGAGTTT 17 V_ELF5_02_M01980 TRANSFAC + 55896881 55896890 7.0E-06 ACCGGAAATA 10 V_HOXA9_01_M01351 TRANSFAC + 55896938 55896954 4.0E-06 TCATTCATAAAACAAAT 17 V_HSF2_01_M00147 TRANSFAC - 55897143 55897152 4.0E-06 GGAATATTCG 10 V_ERG_03_M02062 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_ERM_01_M01992 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_SAP1A_01_M01167 TRANSFAC + 55896880 55896890 6.0E-06 GACCGGAAATA 11 V_BCL6_Q3_01_M02085 TRANSFAC + 55896696 55896705 9.0E-06 ATTTCAAGAA 10 V_GATA1_Q6_M02004 TRANSFAC - 55901976 55901990 4.0E-06 GATTCAGATAGGGAT 15 V_GABPA_02_M02074 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_ATF5_01_M01295 TRANSFAC + 55896600 55896610 2.0E-06 ATTCTCCCTTA 11 V_ZFX_01_M01593 TRANSFAC + 55896832 55896847 3.0E-06 GAGCGGGCCTCGGCGC 16 V_DEAF1_02_M01002 TRANSFAC - 55896815 55896839 0.0E+00 GCCCGCTCGGGTATTTTCGGAACCC 25 V_DEAF1_02_M01002 TRANSFAC - 55897081 55897105 1.0E-06 AACCGTTCGGAAGTTTTCGAAACTC 25 V_DEAF1_01_M01001 TRANSFAC + 55896804 55896828 8.0E-06 GCGTTTCCGGAGGGTTCCGAAAATA 25 V_DEAF1_01_M01001 TRANSFAC - 55896877 55896901 3.0E-06 GCACCTTTGGATATTTCCGGTCTTC 25 V_CETS1_01_M01986 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_NERF_01_M01976 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_LMAF_Q2_M01139 TRANSFAC + 55895466 55895474 6.0E-06 GGTCAGCAG 9 V_ESE1_01_M01977 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_HOXA13_02_M01297 TRANSFAC - 55896691 55896699 1.0E-06 AAATAAAAC 9 V_ETV3_01_M01990 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_SP1_Q6_01_M00931 TRANSFAC + 55895686 55895695 7.0E-06 GGGGCGGGGT 10 V_ELF1_01_M01975 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_OCT1_01_M00135 TRANSFAC + 55896569 55896587 4.0E-06 AGCCACATGCAAATCTCCC 19 V_SOX11_04_M02899 TRANSFAC - 55896591 55896604 1.0E-06 AGAATTGTTTGGAG 14 V_AP2_Q6_M00189 TRANSFAC - 55897830 55897841 9.0E-06 CTCCCGCAGGAG 12 V_HFH4_01_M00742 TRANSFAC - 55896946 55896958 3.0E-06 AAACATTTGTTTT 13 V_OCT_C_M00210 TRANSFAC - 55896573 55896585 1.0E-05 GAGATTTGCATGT 13 V_SP1_02_M01303 TRANSFAC + 55895686 55895696 8.0E-06 GGGGCGGGGTC 11 V_PU1_Q4_M01172 TRANSFAC + 55897288 55897306 3.0E-06 CCCCTCGCCTTCCTCTTTC 19 V_BRN2_01_M00145 TRANSFAC + 55896937 55896952 7.0E-06 TTCATTCATAAAACAA 16 V_TCFAP2E_04_M02926 TRANSFAC - 55896692 55896705 3.0E-06 TTCTTGAAATAAAA 14 V_CETS2_02_M02064 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_PEA3_01_M01991 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_WT1_Q6_01_M02036 TRANSFAC - 55895182 55895191 4.0E-06 CGCCCCCGCC 10 V_ELF2_02_M02054 TRANSFAC + 55896881 55896890 5.0E-06 ACCGGAAATA 10 V_CP2_02_M00947 TRANSFAC + 55898072 55898086 3.0E-06 TCTGGTTTGGGCCAG 15 V_ELF4_04_M02850 TRANSFAC + 55896940 55896956 2.0E-06 ATTCATAAAACAAATGT 17 V_FLI1_01_M02038 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_GC_01_M00255 TRANSFAC - 55901939 55901952 2.0E-06 AGGGGGTGGGGCCT 14 V_ELK1_06_M02059 TRANSFAC + 55896881 55896890 5.0E-06 ACCGGAAATA 10 V_ETV7_01_M02071 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_ELK1_05_M01981 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_SAP1A_02_M01983 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_FLI1_02_M02073 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_HNF3G_Q4_M02015 TRANSFAC + 55896954 55896961 7.0E-06 TGTTTGTT 8 V_PET1_02_M02072 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_SOX8_04_M02912 TRANSFAC + 55896938 55896951 1.0E-06 TCATTCATAAAACA 14 V_ERF_01_M01984 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_STAT1_01_M00224 TRANSFAC + 55897098 55897118 7.0E-06 GAACGGTTCCCGGAATACGCT 21 V_KROX_Q6_M00982 TRANSFAC - 55895180 55895193 3.0E-06 CGCGCCCCCGCCGC 14 V_ER81_02_M02065 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_HNF3_Q6_M00791 TRANSFAC - 55896952 55896964 4.0E-06 CTCAACAAACATT 13 V_ERG_01_M01752 TRANSFAC + 55896881 55896889 7.0E-06 ACCGGAAAT 9 V_GABPA_01_M02039 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_CETS2_01_M01989 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_BCL6_Q3_M01171 TRANSFAC + 55897570 55897579 8.0E-06 AGTTCTAGGT 10 V_EHF_02_M01974 TRANSFAC + 55896881 55896890 8.0E-06 ACCGGAAATA 10 V_SFPI1_04_M02896 TRANSFAC - 55896816 55896829 1.0E-05 GTATTTTCGGAACC 14 V_REST_01_M01256 TRANSFAC - 55895497 55895518 4.0E-06 CGCTGCTGCTGGCCGTGGCGCT 22 V_PET1_01_M02037 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_HBP1_03_M02762 TRANSFAC - 55896933 55896948 2.0E-06 TTTATGAATGAACTGG 16 V_MEF2_04_M00233 TRANSFAC - 55896689 55896710 7.0E-06 GGGTTTTCTTGAAATAAAACTC 22 V_ERBETA_Q5_M01875 TRANSFAC - 55897543 55897557 3.0E-06 GACTGAGTGACCTAA 15 V_PBX1_05_M01967 TRANSFAC - 55896973 55896986 8.0E-06 TGTGATTGGCATAT 14 V_OCAB_Q6_M02113 TRANSFAC + 55896573 55896583 1.0E-06 ACATGCAAATC 11 V_CETS1P54_01_M00032 TRANSFAC + 55896881 55896890 5.0E-06 ACCGGAAATA 10 V_SP1_01_M00008 TRANSFAC + 55895686 55895695 3.0E-06 GGGGCGGGGT 10 V_PEA3_02_M02066 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_ERF_02_M02061 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_MZF1_02_M00084 TRANSFAC - 55897483 55897495 2.0E-06 GAGTGAGGGGAAA 13 V_OCT1_B_M00342 TRANSFAC + 55896574 55896583 4.0E-06 CATGCAAATC 10 V_OCT_Q6_M00795 TRANSFAC - 55896574 55896584 1.0E-05 AGATTTGCATG 11 V_PAX8_B_M00328 TRANSFAC - 55896934 55896951 9.0E-06 TGTTTTATGAATGAACTG 18 V_ER71_01_M01988 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_SOX17_04_M02904 TRANSFAC + 55896934 55896950 4.0E-06 CAGTTCATTCATAAAAC 17 V_NET_01_M01982 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_ER81_01_M01987 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_NEUROD_02_M01288 TRANSFAC - 55895505 55895516 6.0E-06 CTGCTGCTGGCC 12 V_GFI1_Q6_M01067 TRANSFAC - 55898113 55898125 1.0E-06 AAAAATCACAGCT 13 V_SOX15_03_M02799 TRANSFAC - 55896331 55896347 5.0E-06 TACTGAACAAAAGGAAT 17 V_ZIC2_05_M02940 TRANSFAC - 55901991 55902005 5.0E-06 CCACACAGCAGGGAG 15 V_ERM_02_M02069 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_LBP9_01_M01592 TRANSFAC - 55898070 55898086 9.0E-06 CTGGCCCAAACCAGACA 17 V_NFYC_Q5_M02107 TRANSFAC + 55896975 55896988 7.0E-06 ATGCCAATCACAGT 14 V_GABPBETA_Q3_M01876 TRANSFAC + 55897250 55897260 7.0E-06 AGCGGAAATGC 11 V_AP4_01_M00005 TRANSFAC + 55896104 55896121 6.0E-06 TCACTCAGCGCGTGTCTT 18 V_GATA1_04_M00128 TRANSFAC - 55901976 55901988 3.0E-06 TTCAGATAGGGAT 13 V_GFI1B_01_M01058 TRANSFAC - 55898113 55898124 6.0E-06 AAAATCACAGCT 12 V_SMAD3_03_M02794 TRANSFAC - 55898065 55898081 6.0E-06 CCAAACCAGACAAAACT 17 V_NRSF_01_M00256 TRANSFAC + 55895494 55895514 0.0E+00 TCCAGCGCCACGGCCAGCAGC 21 V_ZBTB12_03_M02824 TRANSFAC + 55897566 55897582 5.0E-06 CAAGAGTTCTAGGTCGC 17 V_STAT_01_M00223 TRANSFAC + 55897104 55897112 7.0E-06 TTCCCGGAA 9 V_REST_02_M02256 TRANSFAC + 55895494 55895514 1.0E-06 TCCAGCGCCACGGCCAGCAGC 21 V_LMO2COM_02_M00278 TRANSFAC - 55901978 55901986 7.0E-06 CAGATAGGG 9 V_ZFP281_01_M01597 TRANSFAC - 55901942 55901952 5.0E-06 AGGGGGTGGGG 11 V_SAP1A_03_M02058 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_CETS1_02_M02063 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_EWSR1FLI1_01_M02252 TRANSFAC - 55897397 55897414 4.0E-06 GGGGAGAAGGCAGGCAGA 18 V_FOXJ2_01_M00422 TRANSFAC - 55896949 55896966 1.0E-05 CGCTCAACAAACATTTGT 18 V_VMAF_01_M00035 TRANSFAC - 55896992 55897010 4.0E-06 TATTGCTCACCCAGCACTT 19 V_SOX18_04_M02905 TRANSFAC - 55897520 55897535 6.0E-06 GGACCGAATTCAGGCA 16 V_NET_02_M02060 TRANSFAC + 55896881 55896890 4.0E-06 ACCGGAAATA 10 V_ELF_02_M02053 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_ERG_02_M01985 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_CP2_01_M00072 TRANSFAC - 55898073 55898083 9.0E-06 GCCCAAACCAG 11 V_SOX5_07_M02909 TRANSFAC - 55896591 55896607 6.0E-06 GGGAGAATTGTTTGGAG 17 V_NFYA_Q5_M02106 TRANSFAC - 55896846 55896859 4.0E-06 TGGCCAATGAGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC - 55901940 55901952 3.0E-06 AGGGGGTGGGGCC 13 V_EHF_07_M02849 TRANSFAC + 55896771 55896786 1.0E-06 GAGTATTTCCGAACAT 16 V_GFI1_Q6_01_M02010 TRANSFAC + 55898115 55898124 2.0E-06 CTGTGATTTT 10 V_TCF3_05_M02920 TRANSFAC - 55897476 55897490 2.0E-06 AGGGGAAAATAACTT 15 V_ATATA_B_M00311 TRANSFAC - 55896911 55896920 3.0E-06 CTATATAAGC 10 V_ER71_02_M02067 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10 V_PAX4_04_M00380 TRANSFAC - 55897457 55897486 4.0E-06 GAAAATAACTTGAAAATTCACAACGACTTC 30 V_ZIC1_05_M02939 TRANSFAC - 55901991 55902005 3.0E-06 CCACACAGCAGGGAG 15 V_ETV3_02_M02068 TRANSFAC + 55896881 55896890 3.0E-06 ACCGGAAATA 10 V_ELF4_02_M02056 TRANSFAC + 55896881 55896890 1.0E-06 ACCGGAAATA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.