Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPL21 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6144 ribosomal protein L21 chr13 + 27820691 - 27826191 27825691 Transcription Factor Binding Sites   Download all TFBS in the RPL21 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 27825327 27825334 5.0E-06 ATAAACAA 8 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 27827824 27827839 8.0E-06 TAATTTCAAATGTTCA 16 FOXA1_MA0148.1 JASPAR + 27829712 27829722 9.0E-06 TGTTTGTTTTG 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 27829710 27829721 3.0E-06 AAAACAAACAAA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 27826304 27826316 4.0E-06 TATGCATTAACTA 13 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX - 27825283 27825295 9.0E-06 CGAAGGTCAAACG 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 27825314 27825326 1.0E-06 TGCAAACAAACAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 27825318 27825330 5.0E-06 AACAAACAAATAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 27825322 27825334 1.0E-06 AACAAATAAACAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 27829711 27829723 7.0E-06 ACAAAACAAACAA 13 ZNF232_C2H2_full_monomeric_19_1 SELEX - 27825274 27825292 1.0E-06 AGGTCAAACGAGAATGAAG 19 GMEB2_SAND_DBD_dimer-of-dimers_14_1 SELEX + 27825429 27825442 3.0E-06 GGCGTAAGCACGCT 14 Pax4_MA0068.1 JASPAR - 27825119 27825148 7.0E-06 AAAAGTTTTCAATTACTAAACCCCAGCACT 30 RARG_nuclearreceptor_full_dimeric_18_1 SELEX - 27826287 27826304 2.0E-06 AAGGGCAGTGAGGGTTCA 18 MEF2B_MADS_full_dimeric_12_1 SELEX - 27825238 27825249 8.0E-06 TCTTTAAATAGT 12 MEF2B_MADS_full_dimeric_12_1 SELEX + 27825334 27825345 1.0E-05 ACTACTAATAGC 12 IRF1_MA0050.1 JASPAR - 27827787 27827798 3.0E-06 CAAACTGAAAGC 12 EOMES_TBX_DBD_monomeric_13_1 SELEX + 27826229 27826241 1.0E-06 CAGGTGTGAAAAC 13 CUX1_CUT_DBD_dimeric_18_1 SELEX - 27825007 27825024 0.0E+00 ATCAATAACAGAATAAAT 18 Foxq1_MA0040.1 JASPAR - 27825326 27825336 2.0E-06 AGTTGTTTATT 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 27825315 27825325 1.0E-06 GCAAACAAACA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 27825319 27825329 6.0E-06 ACAAACAAATA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 27825323 27825333 1.0E-06 ACAAATAAACA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 27829712 27829722 1.0E-05 CAAAACAAACA 11 MEF2A_MA0052.1 JASPAR + 27825239 27825248 4.0E-06 CTATTTAAAG 10 FOXI1_MA0042.1 JASPAR - 27825317 27825328 2.0E-06 ATTTGTTTGTTT 12 FOXI1_MA0042.1 JASPAR - 27825321 27825332 1.0E-06 GTTTATTTGTTT 12 FOXI1_MA0042.1 JASPAR - 27825325 27825336 1.0E-06 AGTTGTTTATTT 12 FOXI1_MA0042.1 JASPAR + 27829709 27829720 1.0E-06 GTTTGTTTGTTT 12 YY2_C2H2_full_monomeric_11_1 SELEX + 27825708 27825718 1.0E-06 ACCGCCATCTT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 27825315 27825325 3.0E-06 GCAAACAAACA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 27825319 27825329 6.0E-06 ACAAACAAATA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 27825323 27825333 1.0E-06 ACAAATAAACA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 27829712 27829722 6.0E-06 CAAAACAAACA 11 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 27825286 27825300 1.0E-06 GGGTACGAAGGTCAA 15 Foxd3_MA0041.1 JASPAR - 27825317 27825328 0.0E+00 ATTTGTTTGTTT 12 Foxd3_MA0041.1 JASPAR - 27825321 27825332 1.0E-06 GTTTATTTGTTT 12 Foxd3_MA0041.1 JASPAR + 27829709 27829720 0.0E+00 GTTTGTTTGTTT 12 CUX2_CUT_DBD_dimeric_18_1 SELEX - 27825007 27825024 1.0E-06 ATCAATAACAGAATAAAT 18 TBX21_TBX_full_dimeric_19_1 SELEX - 27825495 27825513 2.0E-06 TGACACTTGCATCGTGTCA 19 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 27825285 27825295 9.0E-06 CGAAGGTCAAA 11 TBX20_TBX_DBD_monomeric_15_1 SELEX + 27826226 27826240 5.0E-06 CTACAGGTGTGAAAA 15 Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 27825327 27825334 5.0E-06 ATAAACAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 27825317 27825329 1.0E-06 AAACAAACAAATA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 27825321 27825333 0.0E+00 AAACAAATAAACA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 27825325 27825337 2.0E-06 AAATAAACAACTA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 27829708 27829720 6.0E-06 AAACAAACAAACC 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 27829712 27829724 2.0E-06 AACAAAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 27825315 27825327 7.0E-06 GCAAACAAACAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 27825319 27825331 9.0E-06 ACAAACAAATAAA 13 RREB1_MA0073.1 JASPAR - 27829706 27829725 1.0E-06 AAACAAAACAAACAAACCGC 20 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 27825094 27825105 6.0E-06 CTACAAGACATA 12 V_FOXP1_01_M00987 TRANSFAC - 27825315 27825334 8.0E-06 TTGTTTATTTGTTTGTTTGC 20 V_FOXP1_01_M00987 TRANSFAC - 27825325 27825344 8.0E-06 CTATTAGTAGTTGTTTATTT 20 V_TAXCREB_01_M00114 TRANSFAC + 27825410 27825424 6.0E-06 AGGCGGTGACGCAAA 15 V_HNF3B_01_M00131 TRANSFAC + 27829707 27829721 5.0E-06 CGGTTTGTTTGTTTT 15 V_MSX3_01_M01341 TRANSFAC + 27825298 27825313 6.0E-06 CCCAAGCAATTATTTC 16 V_DBX1_01_M01483 TRANSFAC + 27825328 27825344 8.0E-06 TAAACAACTACTAATAG 17 V_FREAC7_01_M00293 TRANSFAC + 27825322 27825337 3.0E-06 AACAAATAAACAACTA 16 V_APOLYA_B_M00310 TRANSFAC - 27824999 27825013 4.0E-06 AATAAATACCTTATG 15 V_FOXA2_04_M02749 TRANSFAC + 27825322 27825338 7.0E-06 AACAAATAAACAACTAC 17 V_ZFX_01_M01593 TRANSFAC - 27825674 27825689 1.0E-05 GGCGGGGCCGCGGCGC 16 V_FOXD3_01_M00130 TRANSFAC - 27825317 27825328 0.0E+00 ATTTGTTTGTTT 12 V_FOXD3_01_M00130 TRANSFAC - 27825321 27825332 1.0E-06 GTTTATTTGTTT 12 V_FOXD3_01_M00130 TRANSFAC + 27829709 27829720 0.0E+00 GTTTGTTTGTTT 12 V_FOXO4_02_M00476 TRANSFAC - 27825324 27825337 6.0E-06 TAGTTGTTTATTTG 14 V_ZFP740_04_M02938 TRANSFAC - 27825941 27825957 8.0E-06 AATGTCCCCCCGCAGGG 17 V_MAFB_03_M02879 TRANSFAC - 27825307 27825321 2.0E-06 TGTTTGCAGAAATAA 15 V_MEF2_02_M00231 TRANSFAC - 27825234 27825255 0.0E+00 TGTATGTCTTTAAATAGTTTCT 22 V_EOMES_03_M02747 TRANSFAC + 27826226 27826242 0.0E+00 CTACAGGTGTGAAAACC 17 V_ISL2_01_M01328 TRANSFAC + 27825298 27825313 9.0E-06 CCCAAGCAATTATTTC 16 V_FOXO3A_Q1_M01137 TRANSFAC + 27825326 27825337 3.0E-06 AATAAACAACTA 12 V_HNF3_Q6_01_M01012 TRANSFAC - 27825317 27825334 0.0E+00 TTGTTTATTTGTTTGTTT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 27825321 27825338 6.0E-06 GTAGTTGTTTATTTGTTT 18 V_HNF3_Q6_01_M01012 TRANSFAC + 27829707 27829724 0.0E+00 CGGTTTGTTTGTTTTGTT 18 V_FOXJ1_03_M02750 TRANSFAC + 27825316 27825331 9.0E-06 CAAACAAACAAATAAA 16 V_HFH4_01_M00742 TRANSFAC - 27825316 27825328 0.0E+00 ATTTGTTTGTTTG 13 V_HFH4_01_M00742 TRANSFAC - 27825320 27825332 5.0E-06 GTTTATTTGTTTG 13 V_HFH4_01_M00742 TRANSFAC + 27829709 27829721 1.0E-06 GTTTGTTTGTTTT 13 V_NKX61_03_M01489 TRANSFAC - 27825299 27825315 7.0E-06 CAGAAATAATTGCTTGG 17 V_DLX2_01_M01468 TRANSFAC + 27825300 27825315 1.0E-05 CAAGCAATTATTTCTG 16 V_FOXP3_01_M01599 TRANSFAC + 27825327 27825334 5.0E-06 ATAAACAA 8 V_HOXA13_03_M01430 TRANSFAC - 27825142 27825157 9.0E-06 AAATCTAGTAAAAGTT 16 V_CDX_Q5_M00991 TRANSFAC + 27825252 27825269 4.0E-06 TACAAACTAGATAATATA 18 V_DLX5_01_M01388 TRANSFAC + 27825300 27825315 4.0E-06 CAAGCAATTATTTCTG 16 V_HOXC13_01_M01317 TRANSFAC - 27825142 27825157 6.0E-06 AAATCTAGTAAAAGTT 16 V_MEF2A_Q6_M02024 TRANSFAC + 27825240 27825249 4.0E-06 TATTTAAAGA 10 V_BCL6_02_M01185 TRANSFAC - 27825595 27825608 7.0E-06 TTCTTTCTAGGGAA 14 V_HMBOX1_01_M01456 TRANSFAC - 27825142 27825158 2.0E-06 AAAATCTAGTAAAAGTT 17 V_GC_01_M00255 TRANSFAC - 27825680 27825693 2.0E-06 AAGAGGCGGGGCCG 14 V_FOXO1_02_M00474 TRANSFAC - 27825324 27825337 8.0E-06 TAGTTGTTTATTTG 14 V_ZFP410_03_M02832 TRANSFAC - 27824989 27825005 6.0E-06 CCTTATGGGATGTTAGG 17 V_TCFAP2C_03_M02821 TRANSFAC - 27825626 27825640 9.0E-06 GCTGCCTGAGGGAAA 15 V_HNF3G_Q4_M02015 TRANSFAC - 27825318 27825325 7.0E-06 TGTTTGTT 8 V_HNF3G_Q4_M02015 TRANSFAC + 27829712 27829719 7.0E-06 TGTTTGTT 8 V_DOBOX4_01_M01359 TRANSFAC - 27824999 27825015 3.0E-06 AGAATAAATACCTTATG 17 V_IRF2_01_M00063 TRANSFAC - 27827787 27827799 6.0E-06 GCAAACTGAAAGC 13 V_HNF3_Q6_M00791 TRANSFAC + 27825319 27825331 1.0E-06 ACAAACAAATAAA 13 V_HNF3_Q6_M00791 TRANSFAC - 27829710 27829722 0.0E+00 CAAAACAAACAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 27825006 27825016 8.0E-06 TATTTATTCTG 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 27829712 27829722 1.0E-06 TGTTTGTTTTG 11 V_MEF2_03_M00232 TRANSFAC - 27825234 27825255 0.0E+00 TGTATGTCTTTAAATAGTTTCT 22 V_ELF5_01_M01197 TRANSFAC - 27825067 27825077 7.0E-06 ACAAGGATGTA 11 V_OCT1_04_M00138 TRANSFAC - 27824884 27824906 0.0E+00 GTATGACAATTCATATACATTCA 23 V_OCT1_04_M00138 TRANSFAC - 27824890 27824912 2.0E-06 TAAATAGTATGACAATTCATATA 23 V_REX1_03_M01744 TRANSFAC - 27825707 27825718 9.0E-06 AAGATGGCGGTT 12 V_HMX1_02_M01481 TRANSFAC + 27825299 27825315 3.0E-06 CCAAGCAATTATTTCTG 17 V_MEF2_04_M00233 TRANSFAC - 27825234 27825255 0.0E+00 TGTATGTCTTTAAATAGTTTCT 22 V_XFD2_01_M00268 TRANSFAC + 27825324 27825337 3.0E-06 CAAATAAACAACTA 14 V_HFH1_01_M00129 TRANSFAC - 27825325 27825336 1.0E-06 AGTTGTTTATTT 12 V_NCX_02_M01420 TRANSFAC + 27825130 27825146 2.0E-06 TTAGTAATTGAAAACTT 17 V_NR1B1_Q6_M02110 TRANSFAC - 27825285 27825294 1.0E-05 GAAGGTCAAA 10 V_FOXO1_Q5_M01216 TRANSFAC - 27829714 27829722 8.0E-06 CAAAACAAA 9 V_EVI1_06_M00011 TRANSFAC + 27825257 27825265 7.0E-06 ACTAGATAA 9 V_GLI3_01_M01596 TRANSFAC + 27826055 27826065 7.0E-06 GTGGGTGGCCC 11 V_HFH8_01_M00294 TRANSFAC - 27825316 27825328 2.0E-06 ATTTGTTTGTTTG 13 V_HFH8_01_M00294 TRANSFAC - 27825324 27825336 0.0E+00 AGTTGTTTATTTG 13 V_MYF6_04_M02885 TRANSFAC - 27825208 27825222 4.0E-06 CTAAACATACGCACC 15 V_FAC1_01_M00456 TRANSFAC - 27829712 27829725 0.0E+00 AAACAAAACAAACA 14 V_TCFE2A_03_M02823 TRANSFAC + 27826224 27826240 2.0E-06 GCCTACAGGTGTGAAAA 17 V_BARHL1_01_M01332 TRANSFAC + 27825298 27825313 5.0E-06 CCCAAGCAATTATTTC 16 V_FOXL1_02_M02857 TRANSFAC - 27829711 27829726 5.0E-06 GAAACAAAACAAACAA 16 V_FOXL1_04_M02753 TRANSFAC + 27825322 27825338 8.0E-06 AACAAATAAACAACTAC 17 V_FOXJ3_06_M02855 TRANSFAC - 27829711 27829727 7.0E-06 CGAAACAAAACAAACAA 17 V_CBF_01_M01079 TRANSFAC + 27829700 27829715 7.0E-06 TACTAAGCGGTTTGTT 16 V_MYOGNF1_01_M00056 TRANSFAC - 27825492 27825520 2.0E-06 CACAAGCTGACACTTGCATCGTGTCAGAC 29 V_CREB_Q2_M00177 TRANSFAC + 27825414 27825425 8.0E-06 GGTGACGCAAAG 12 V_NRSF_01_M00256 TRANSFAC - 27827800 27827820 5.0E-06 TTCAGTAGCGAAGTGAGAACT 21 V_FOXO3_01_M00477 TRANSFAC + 27829712 27829725 9.0E-06 TGTTTGTTTTGTTT 14 V_TBX15_02_M01264 TRANSFAC + 27827819 27827836 6.0E-06 AAATGTGAACATTTGAAA 18 V_FOX_Q2_M00809 TRANSFAC - 27825320 27825332 3.0E-06 GTTTATTTGTTTG 13 V_FOX_Q2_M00809 TRANSFAC + 27829709 27829721 0.0E+00 GTTTGTTTGTTTT 13 V_BARX2_01_M01431 TRANSFAC + 27825300 27825315 5.0E-06 CAAGCAATTATTTCTG 16 V_PBX1_02_M00124 TRANSFAC - 27825017 27825031 6.0E-06 AACGTCCATCAATAA 15 V_IRF1_Q6_01_M01881 TRANSFAC + 27827786 27827799 5.0E-06 AGCTTTCAGTTTGC 14 V_TCFAP2A_03_M02819 TRANSFAC - 27825626 27825640 9.0E-06 GCTGCCTGAGGGAAA 15 V_NUR77_Q5_M01217 TRANSFAC + 27825286 27825295 7.0E-06 TTGACCTTCG 10 V_SRF_06_M02916 TRANSFAC - 27825034 27825050 7.0E-06 GTAGAAGCAAAAAATTA 17 V_HFH3_01_M00289 TRANSFAC - 27825316 27825328 4.0E-06 ATTTGTTTGTTTG 13 V_HFH3_01_M00289 TRANSFAC - 27825320 27825332 2.0E-06 GTTTATTTGTTTG 13 V_HFH3_01_M00289 TRANSFAC - 27825324 27825336 2.0E-06 AGTTGTTTATTTG 13 V_HFH3_01_M00289 TRANSFAC + 27829709 27829721 1.0E-06 GTTTGTTTGTTTT 13 V_FOXJ2_01_M00422 TRANSFAC - 27825001 27825018 5.0E-06 AACAGAATAAATACCTTA 18 V_FOXJ2_01_M00422 TRANSFAC + 27825309 27825326 8.0E-06 ATTTCTGCAAACAAACAA 18 V_FOXJ2_01_M00422 TRANSFAC + 27825313 27825330 1.0E-06 CTGCAAACAAACAAATAA 18 V_FOXJ2_01_M00422 TRANSFAC + 27825317 27825334 0.0E+00 AAACAAACAAATAAACAA 18 V_FOXJ2_01_M00422 TRANSFAC + 27825321 27825338 0.0E+00 AAACAAATAAACAACTAC 18 V_FOXJ2_01_M00422 TRANSFAC - 27829707 27829724 1.0E-06 AACAAAACAAACAAACCG 18 V_SOX1_03_M02802 TRANSFAC + 27825131 27825146 2.0E-06 TAGTAATTGAAAACTT 16 V_FOXO1_01_M00473 TRANSFAC + 27825326 27825335 4.0E-06 AATAAACAAC 10 V_HNF3B_Q6_M02014 TRANSFAC - 27825318 27825326 1.0E-05 TTGTTTGTT 9 V_HNF3B_Q6_M02014 TRANSFAC - 27825326 27825334 6.0E-06 TTGTTTATT 9 V_HNF3B_Q6_M02014 TRANSFAC + 27829711 27829719 1.0E-05 TTGTTTGTT 9 V_PAX4_02_M00377 TRANSFAC - 27825032 27825042 9.0E-06 AAAAAATTAGA 11 V_BARHL2_01_M01446 TRANSFAC + 27825298 27825313 6.0E-06 CCCAAGCAATTATTTC 16 V_PIT1_Q6_M00802 TRANSFAC - 27824882 27824899 0.0E+00 AATTCATATACATTCAAC 18 V_FOXO4_01_M00472 TRANSFAC + 27825327 27825337 2.0E-06 ATAAACAACTA 11 V_HMX3_02_M01413 TRANSFAC + 27825299 27825315 9.0E-06 CCAAGCAATTATTTCTG 17 V_TCFAP2E_03_M02822 TRANSFAC - 27825626 27825640 7.0E-06 GCTGCCTGAGGGAAA 15 V_EHF_07_M02849 TRANSFAC + 27824981 27824996 9.0E-06 TACTACATCCTAACAT 16 V_TCF11MAFG_01_M00284 TRANSFAC - 27824888 27824909 9.0E-06 ATAGTATGACAATTCATATACA 22 V_PBX1_04_M01357 TRANSFAC - 27825014 27825030 7.0E-06 ACGTCCATCAATAACAG 17 V_ARID5A_04_M02840 TRANSFAC - 27827865 27827881 1.0E-05 AGTCAAATACGACTGAA 17 V_FOXK1_03_M02752 TRANSFAC + 27825322 27825338 1.0E-05 AACAAATAAACAACTAC 17 V_PAX4_04_M00380 TRANSFAC + 27825253 27825282 8.0E-06 ACAAACTAGATAATATACTTGCTTCATTCT 30 V_NANOG_02_M01247 TRANSFAC - 27829707 27829726 8.0E-06 GAAACAAAACAAACAAACCG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.