Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPL18A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6142 ribosomal protein L18a chr19 + 17965686 - 17971186 17970686 Transcription Factor Binding Sites   Download all TFBS in the RPL18A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX21_TBX_full_dimeric_16_1 SELEX + 17975236 17975251 4.0E-06 GGGGTGTTGTAACACC 16 CTCF_MA0139.1 JASPAR - 17966556 17966574 0.0E+00 TGTCCACCAGGTGGCAGCA 19 EWSR1-FLI1_MA0149.1 JASPAR - 17973960 17973977 4.0E-06 GTGAGGAAGGGAGGCATG 18 NFKB1_MA0105.1 JASPAR - 17973849 17973859 8.0E-06 GGGGAGTCCCC 11 STAT1_MA0137.2 JASPAR - 17970546 17970560 6.0E-06 CGTTTCCCAGAAGGC 15 SOX9_HMG_DBD_monomeric_9_1 SELEX - 17971350 17971358 9.0E-06 GAACAATGG 9 Pax4_MA0068.1 JASPAR - 17966805 17966834 2.0E-06 AAAAAATATACATTTTTTTAGTATTTCTTG 30 ZIC4_C2H2_DBD_monomeric_15_1 SELEX - 17970798 17970812 9.0E-06 GGCCCCCTGCCGCGC 15 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 17973842 17973853 5.0E-06 TCCCCCAGGGCA 12 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 17971285 17971300 1.0E-05 ATACACCCACTCCATG 16 FIGLA_bHLH_DBD_dimeric_10_1 SELEX - 17970524 17970533 7.0E-06 TCCACCTGTT 10 ZIC3_C2H2_full_monomeric_15_1 SELEX - 17970798 17970812 4.0E-06 GGCCCCCTGCCGCGC 15 znf143_MA0088.1 JASPAR - 17970541 17970560 1.0E-06 CGTTTCCCAGAAGGCAACGA 20 Lhx3_MA0135.1 JASPAR - 17966782 17966794 3.0E-06 AAATTAACTTTTG 13 YY2_C2H2_full_monomeric_11_1 SELEX - 17970929 17970939 8.0E-06 GCCGCCATGTT 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 17970542 17970557 8.0E-06 TTCCCAGAAGGCAACG 16 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 17973848 17973860 9.0E-06 AGGGGAGTCCCCC 13 IRF9_IRF_full_trimeric_15_1 SELEX - 17971316 17971330 2.0E-06 AAGGAAACCGAAGCT 15 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 17973842 17973853 2.0E-06 TCCCCCAGGGCA 12 SOX9_MA0077.1 JASPAR - 17971350 17971358 5.0E-06 GAACAATGG 9 IRF3_IRF_full_trimeric_21_1 SELEX - 17971315 17971335 1.0E-06 ACAGCAAGGAAACCGAAGCTG 21 ETV6_ETS_full_dimeric_15_1 SELEX - 17970725 17970739 5.0E-06 CCGCAAAAGGAAGTG 15 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 17973842 17973853 4.0E-06 TCCCCCAGGGCA 12 ZIC1_C2H2_full_monomeric_14_1 SELEX - 17970799 17970812 7.0E-06 GGCCCCCTGCCGCG 14 V_YY1_02_M00069 TRANSFAC - 17970922 17970941 2.0E-06 TGGCCGCCATGTTGGGTGCA 20 V_GATA3_03_M00351 TRANSFAC + 17966769 17966778 3.0E-06 AAAGATTTTA 10 V_STAT_Q6_M00777 TRANSFAC + 17973184 17973196 8.0E-06 CGCTTTTCTGAGA 13 V_P50P50_Q3_M01223 TRANSFAC + 17973848 17973860 1.0E-05 GGGGGACTCCCCT 13 V_MAF_Q6_M00648 TRANSFAC - 17970721 17970736 3.0E-06 CAAAAGGAAGTGTCCT 16 V_HEN1_01_M00068 TRANSFAC + 17966517 17966538 1.0E-06 CTTGGCCTCAGCTGGGCCACCG 22 V_HEN1_01_M00068 TRANSFAC - 17966517 17966538 6.0E-06 CGGTGGCCCAGCTGAGGCCAAG 22 V_AP4_Q6_02_M01860 TRANSFAC - 17966519 17966531 1.0E-05 CCAGCTGAGGCCA 13 V_GM497_04_M02864 TRANSFAC + 17975287 17975302 7.0E-06 GTCAGCACACAAGCAC 16 V_GC_01_M00255 TRANSFAC + 17970671 17970684 7.0E-06 AGAGGGCGGGTCTT 14 V_STAF_01_M00262 TRANSFAC - 17970538 17970559 3.0E-06 GTTTCCCAGAAGGCAACGAGGC 22 V_PAX4_05_M01385 TRANSFAC + 17966784 17966800 7.0E-06 AAAGTTAATTTGCCCAC 17 V_MATH1_Q2_M01716 TRANSFAC + 17966561 17966570 9.0E-06 CCACCTGGTG 10 V_ELF5_01_M01197 TRANSFAC - 17970725 17970735 6.0E-06 AAAAGGAAGTG 11 V_REX1_03_M01744 TRANSFAC + 17970929 17970940 1.0E-06 AACATGGCGGCC 12 V_NFKAPPAB50_01_M00051 TRANSFAC - 17973850 17973859 8.0E-06 GGGGAGTCCC 10 V_STAT4_Q5_M02117 TRANSFAC + 17970549 17970558 7.0E-06 TTCTGGGAAA 10 V_STAF_02_M00264 TRANSFAC - 17970539 17970559 1.0E-06 GTTTCCCAGAAGGCAACGAGG 21 V_CTCF_02_M01259 TRANSFAC - 17966558 17966577 0.0E+00 GAGTGTCCACCAGGTGGCAG 20 V_STAT3_03_M01595 TRANSFAC + 17970547 17970562 1.0E-06 CCTTCTGGGAAACGAA 16 V_CTCF_01_M01200 TRANSFAC - 17966556 17966575 0.0E+00 GTGTCCACCAGGTGGCAGCA 20 V_SOX9_B1_M00410 TRANSFAC - 17971348 17971361 7.0E-06 AGGGAACAATGGGG 14 V_IRF7_01_M00453 TRANSFAC - 17966172 17966189 9.0E-06 CAGGAAAAGGAATTTAGG 18 V_IRF7_01_M00453 TRANSFAC - 17971313 17971330 4.0E-06 AAGGAAACCGAAGCTGGA 18 V_NEUROD_02_M01288 TRANSFAC + 17966195 17966206 1.0E-06 TTCCTGCTGTCC 12 V_YY1_03_M02044 TRANSFAC - 17970928 17970939 1.0E-06 GCCGCCATGTTG 12 V_CAAT_01_M00254 TRANSFAC + 17970605 17970616 2.0E-06 CATAGCCAATGA 12 V_HEN1_02_M00058 TRANSFAC + 17966517 17966538 1.0E-06 CTTGGCCTCAGCTGGGCCACCG 22 V_HEN1_02_M00058 TRANSFAC - 17966517 17966538 7.0E-06 CGGTGGCCCAGCTGAGGCCAAG 22 V_NRF2_01_M00108 TRANSFAC - 17970680 17970689 3.0E-06 ACCGGAAGAC 10 V_FPM315_01_M01587 TRANSFAC - 17966154 17966165 2.0E-06 AGGGGAGGAGGA 12 V_STAT1STAT1_Q3_M01212 TRANSFAC - 17970547 17970559 3.0E-06 GTTTCCCAGAAGG 13 V_EWSR1FLI1_01_M02252 TRANSFAC - 17973960 17973977 4.0E-06 GTGAGGAAGGGAGGCATG 18 V_VMAF_01_M00035 TRANSFAC - 17975278 17975296 1.0E-05 GTGTGCTGACCCTGCCCAG 19 V_HNF4_01_M00134 TRANSFAC + 17966775 17966793 1.0E-05 TTTAGTGCAAAAGTTAATT 19 V_BRF1_01_M01747 TRANSFAC - 17966477 17966489 8.0E-06 AGGTTCAAATCTT 13 V_STAT1_05_M01260 TRANSFAC + 17970546 17970567 2.0E-06 GCCTTCTGGGAAACGAAGTCTC 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.