Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6125 ribosomal protein L5 chr1 + 93292593 - 93298093 93297593 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 93297485 93297503 0.0E+00 CTTCCAGCAGGGGGCGGAA 19 IRF7_IRF_DBD_dimeric_14_1 SELEX + 93297377 93297390 3.0E-06 AAGAAAGCGAAAGG 14 TBR1_TBX_DBD_monomeric_10_1 SELEX - 93297536 93297545 6.0E-06 ACGTGTGAAA 10 PROX1_PROX_DBD_dimeric_12_1 SELEX + 93297506 93297517 9.0E-06 TAAAACGCCTTG 12 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 93297597 93297608 4.0E-06 CCTTTTCCCACC 12 TBX1_TBX_DBD_dimeric_23_1 SELEX - 93297536 93297558 2.0E-06 GGTCACGCCAGTGACGTGTGAAA 23 IRF1_MA0050.1 JASPAR + 93297379 93297390 5.0E-06 GAAAGCGAAAGG 12 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 93297268 93297277 9.0E-06 AAAAATTAAA 10 SP1_MA0079.2 JASPAR - 93297860 93297869 3.0E-06 CCCCTCCCCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 93297486 93297502 8.0E-06 TCCGCCCCCTGCTGGAA 17 Lhx3_MA0135.1 JASPAR + 93297266 93297278 2.0E-06 TATTTAATTTTTT 13 IRF9_IRF_full_trimeric_15_1 SELEX + 93297376 93297390 6.0E-06 AAAGAAAGCGAAAGG 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 93297378 93297392 4.0E-06 AGAAAGCGAAAGGCT 15 TBX21_TBX_full_dimeric_19_1 SELEX + 93297538 93297556 1.0E-06 TCACACGTCACTGGCGTGA 19 TBX21_TBX_full_dimeric_19_1 SELEX - 93297538 93297556 1.0E-06 TCACGCCAGTGACGTGTGA 19 IRF3_IRF_full_trimeric_21_1 SELEX + 93298602 93298622 0.0E+00 CAAATATGGAAATTGAAAGCG 21 NRF1_NRF_full_dimeric_12_1 SELEX + 93297574 93297585 5.0E-06 TGCGCCTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 93297574 93297585 5.0E-06 TGCGCAGGCGCA 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 93297273 93297285 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 93297274 93297286 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 93297275 93297287 5.0E-06 GAAAAAAAAAAAA 13 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 93297274 93297287 8.0E-06 GAAAAAAAAAAAAA 14 V_FOXP1_01_M00987 TRANSFAC + 93297265 93297284 0.0E+00 CTATTTAATTTTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 93297266 93297285 6.0E-06 TATTTAATTTTTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 93297270 93297289 4.0E-06 TAATTTTTTTTTTTTTTCCT 20 V_FOXP1_01_M00987 TRANSFAC + 93297274 93297293 8.0E-06 TTTTTTTTTTTTTCCTGCTT 20 V_HNF3B_01_M00131 TRANSFAC + 93297261 93297275 3.0E-06 TGTCCTATTTAATTT 15 V_TST1_02_M01316 TRANSFAC - 93297262 93297278 9.0E-06 AAAAAATTAAATAGGAC 17 V_DBX1_01_M01483 TRANSFAC - 93297263 93297279 9.0E-06 AAAAAAATTAAATAGGA 17 V_DBX1_01_M01483 TRANSFAC + 93297266 93297282 6.0E-06 TATTTAATTTTTTTTTT 17 V_DBX1_01_M01483 TRANSFAC - 93297266 93297282 8.0E-06 AAAAAAAAAATTAAATA 17 V_DBX1_01_M01483 TRANSFAC - 93297270 93297286 8.0E-06 AAAAAAAAAAAAAATTA 17 V_HMGIY_Q3_M01010 TRANSFAC + 93297266 93297280 0.0E+00 TATTTAATTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC + 93297267 93297281 1.0E-06 ATTTAATTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC + 93297271 93297285 5.0E-06 AATTTTTTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC + 93297272 93297286 1.0E-05 ATTTTTTTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC - 93297256 93297270 4.0E-06 AAATAGGACAAGTTT 15 V_EVI1_04_M00081 TRANSFAC - 93297266 93297280 2.0E-06 AAAAAAAATTAAATA 15 V_EVI1_04_M00081 TRANSFAC - 93297270 93297284 6.0E-06 AAAAAAAAAAAATTA 15 V_EVI1_04_M00081 TRANSFAC - 93297273 93297287 8.0E-06 GAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 93297274 93297288 4.0E-06 GGAAAAAAAAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC + 93297271 93297282 9.0E-06 AATTTTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC + 93297265 93297280 3.0E-06 CTATTTAATTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 93297266 93297281 0.0E+00 TATTTAATTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 93297267 93297282 9.0E-06 ATTTAATTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 93297268 93297283 9.0E-06 TTTAATTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 93297270 93297285 2.0E-06 TAATTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 93297271 93297286 9.0E-06 AATTTTTTTTTTTTTT 16 V_DEAF1_02_M01002 TRANSFAC + 93298086 93298110 1.0E-05 AGTACTTCGTGGGTTTTCCAGGAGA 25 V_PROP1_01_M01294 TRANSFAC + 93297270 93297280 5.0E-06 TAATTTTTTTT 11 V_IRF2_Q6_M01882 TRANSFAC + 93297377 93297392 7.0E-06 AAGAAAGCGAAAGGCT 16 V_NFAT3_Q3_M01734 TRANSFAC + 93297280 93297289 6.0E-06 TTTTTTTCCT 10 V_OCT1_01_M00135 TRANSFAC + 93298601 93298619 2.0E-06 ACAAATATGGAAATTGAAA 19 V_SP1_03_M02281 TRANSFAC - 93297860 93297869 3.0E-06 CCCCTCCCCC 10 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 93297604 93297619 8.0E-06 CGGCGCTAGGGGGTGG 16 V_LHX3A_01_M00510 TRANSFAC + 93297267 93297276 7.0E-06 ATTTAATTTT 10 V_TCFAP2E_04_M02926 TRANSFAC - 93297271 93297284 4.0E-06 AAAAAAAAAAAATT 14 V_TCFAP2E_04_M02926 TRANSFAC - 93297272 93297285 3.0E-06 AAAAAAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 93297273 93297286 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 93297274 93297287 3.0E-06 GAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 93297277 93297290 8.0E-06 CAGGAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 93297279 93297292 1.0E-06 AGCAGGAAAAAAAA 14 V_CDX_Q5_M00991 TRANSFAC - 93297268 93297285 3.0E-06 AAAAAAAAAAAAATTAAA 18 V_NKX62_Q2_M00489 TRANSFAC - 93297264 93297275 5.0E-06 AAATTAAATAGG 12 V_REX1_01_M01695 TRANSFAC - 93297831 93297840 4.0E-06 GCAGCCATTT 10 V_E2_Q6_M00181 TRANSFAC - 93298577 93298592 6.0E-06 GGACCAGCACCGGTAA 16 V_SRF_C_M00215 TRANSFAC - 93297823 93297837 1.0E-06 GCCATTTAAGGCCAC 15 V_ELF4_04_M02850 TRANSFAC - 93297269 93297285 9.0E-06 AAAAAAAAAAAAATTAA 17 V_ELF4_04_M02850 TRANSFAC - 93297270 93297286 2.0E-06 AAAAAAAAAAAAAATTA 17 V_ELF4_04_M02850 TRANSFAC - 93297271 93297287 1.0E-06 GAAAAAAAAAAAAAATT 17 V_ELF4_04_M02850 TRANSFAC - 93297272 93297288 1.0E-06 GGAAAAAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC - 93297273 93297289 4.0E-06 AGGAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 93298462 93298478 6.0E-06 CCTCAAATAACAACTAC 17 V_ZFP105_03_M02827 TRANSFAC - 93297269 93297283 1.0E-06 AAAAAAAAAAATTAA 15 V_ZFP105_03_M02827 TRANSFAC - 93297270 93297284 0.0E+00 AAAAAAAAAAAATTA 15 V_ZFP105_03_M02827 TRANSFAC - 93297271 93297285 1.0E-06 AAAAAAAAAAAAATT 15 V_ZFP105_03_M02827 TRANSFAC - 93297272 93297286 0.0E+00 AAAAAAAAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC - 93297273 93297287 1.0E-06 GAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 93297274 93297288 4.0E-06 GGAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 93297275 93297289 6.0E-06 AGGAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 93298463 93298477 6.0E-06 CTCAAATAACAACTA 15 V_HNF1_Q6_M00790 TRANSFAC + 93297266 93297283 2.0E-06 TATTTAATTTTTTTTTTT 18 V_NKX61_01_M00424 TRANSFAC + 93297266 93297278 0.0E+00 TATTTAATTTTTT 13 V_SP4_03_M02810 TRANSFAC - 93297489 93297505 8.0E-06 CGTTCCGCCCCCTGCTG 17 V_SP1_Q6_M00196 TRANSFAC + 93297859 93297871 9.0E-06 GGGGGGAGGGGTT 13 V_HNF1_Q6_01_M01011 TRANSFAC - 93297264 93297284 1.0E-06 AAAAAAAAAAAATTAAATAGG 21 V_EGR1_04_M02848 TRANSFAC + 93298486 93298501 7.0E-06 TTCGAAGTGGGACATA 16 V_OCT1_04_M00138 TRANSFAC + 93298599 93298621 1.0E-06 AAACAAATATGGAAATTGAAAGC 23 V_OCT1_08_M01354 TRANSFAC - 93297266 93297281 8.0E-06 AAAAAAAAATTAAATA 16 V_SP1SP3_Q4_M01219 TRANSFAC - 93297491 93297501 8.0E-06 CCGCCCCCTGC 11 V_PIT1_01_M01465 TRANSFAC - 93297262 93297278 3.0E-06 AAAAAATTAAATAGGAC 17 V_PIT1_01_M01465 TRANSFAC + 93297263 93297279 9.0E-06 TCCTATTTAATTTTTTT 17 V_ZBRK1_01_M01105 TRANSFAC - 93297584 93297598 1.0E-06 GGGCCACAGCCCTTG 15 V_ZBRK1_01_M01105 TRANSFAC - 93297831 93297845 0.0E+00 GGGCGGCAGCCATTT 15 V_SPIB_01_M01204 TRANSFAC - 93297711 93297727 7.0E-06 AGAAAAGGGAACCTCCA 17 V_HB24_01_M01399 TRANSFAC + 93297263 93297277 9.0E-06 TCCTATTTAATTTTT 15 V_CTCF_02_M01259 TRANSFAC + 93297482 93297501 1.0E-06 CTCCTTCCAGCAGGGGGCGG 20 V_LHX3b_01_M01971 TRANSFAC + 93297267 93297276 5.0E-06 ATTTAATTTT 10 V_CTCF_01_M01200 TRANSFAC + 93297484 93297503 1.0E-06 CCTTCCAGCAGGGGGCGGAA 20 V_MTF1_06_M02882 TRANSFAC - 93297273 93297286 1.0E-06 AAAAAAAAAAAAAA 14 V_E2_01_M00107 TRANSFAC - 93298577 93298592 1.0E-06 GGACCAGCACCGGTAA 16 V_FAC1_01_M00456 TRANSFAC - 93297273 93297286 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 93297274 93297287 9.0E-06 GAAAAAAAAAAAAA 14 V_BRN4_01_M01473 TRANSFAC - 93297262 93297278 5.0E-06 AAAAAATTAAATAGGAC 17 V_IPF1_05_M01255 TRANSFAC - 93297266 93297277 2.0E-06 AAAAATTAAATA 12 V_NCX_01_M00484 TRANSFAC - 93298573 93298582 8.0E-06 CGGTAATTGT 10 V_SMAD3_03_M02794 TRANSFAC - 93298537 93298553 7.0E-06 CTGCTCCAGACAGCAAT 17 V_ZFP206_01_M01742 TRANSFAC + 93297574 93297584 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 93297575 93297585 1.0E-06 TGCGCAGGCGC 11 V_ZFP281_01_M01597 TRANSFAC + 93297859 93297869 2.0E-06 GGGGGGAGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC + 93298601 93298615 1.0E-06 ACAAATATGGAAATT 15 V_SRF_Q4_M00810 TRANSFAC - 93297820 93297837 3.0E-06 GCCATTTAAGGCCACGCT 18 V_SRF_Q4_M00810 TRANSFAC + 93298600 93298617 2.0E-06 AACAAATATGGAAATTGA 18 V_OSR1_04_M02888 TRANSFAC - 93298133 93298148 8.0E-06 ACAAGCTTCCTAAATC 16 V_SRF_02_M01257 TRANSFAC + 93297227 93297244 9.0E-06 GCCCAGAGAAGGCAAGAG 18 V_SRF_06_M02916 TRANSFAC - 93297269 93297285 1.0E-06 AAAAAAAAAAAAATTAA 17 V_SRF_06_M02916 TRANSFAC - 93297270 93297286 0.0E+00 AAAAAAAAAAAAAATTA 17 V_SRF_06_M02916 TRANSFAC - 93297271 93297287 0.0E+00 GAAAAAAAAAAAAAATT 17 V_SRF_06_M02916 TRANSFAC - 93297272 93297288 0.0E+00 GGAAAAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC - 93297273 93297289 0.0E+00 AGGAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 93297274 93297290 1.0E-06 CAGGAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 93297275 93297291 1.0E-06 GCAGGAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 93298592 93298608 9.0E-06 CTTGAAGAAACAAATAT 17 V_HNF1A_Q5_M02013 TRANSFAC + 93297267 93297277 8.0E-06 ATTTAATTTTT 11 V_PAX4_02_M00377 TRANSFAC - 93297268 93297278 5.0E-06 AAAAAATTAAA 11 V_TCF3_05_M02920 TRANSFAC - 93297271 93297285 9.0E-06 AAAAAAAAAAAAATT 15 V_TCF3_05_M02920 TRANSFAC - 93297272 93297286 9.0E-06 AAAAAAAAAAAAAAT 15 V_TCF3_05_M02920 TRANSFAC - 93297275 93297289 1.0E-06 AGGAAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 93297276 93297290 4.0E-06 CAGGAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 93297277 93297291 4.0E-06 GCAGGAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 93297278 93297292 9.0E-06 AGCAGGAAAAAAAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.