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RPGR Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6103 retinitis pigmentosa GTPase regulator chrX - 38186288 - 38191788 38186788 Transcription Factor Binding Sites   Download all TFBS in the RPGR promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 38185569 38185581 7.0E-06 GAAAACATACATA 13 Foxa2_MA0047.2 JASPAR + 38185494 38185505 7.0E-06 TGTTTACTTTCC 12 FOXA1_MA0148.1 JASPAR + 38185494 38185504 2.0E-06 TGTTTACTTTC 11 FOXF2_MA0030.1 JASPAR - 38185492 38185505 1.0E-06 GGAAAGTAAACAAA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 38185492 38185503 0.0E+00 AAAGTAAACAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 38186778 38186790 3.0E-06 AGTCAACAAACAG 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 38185493 38185503 2.0E-06 AAAGTAAACAA 11 TBX19_TBX_DBD_dimeric_20_1 SELEX + 38185510 38185529 6.0E-06 TGTCTCACTAAATTGTGAAC 20 TBX19_TBX_DBD_dimeric_20_1 SELEX - 38185510 38185529 5.0E-06 GTTCACAATTTAGTGAGACA 20 FOXO1_forkhead_DBD_monomeric_8_1 SELEX - 38185493 38185500 7.0E-06 GTAAACAA 8 NFYA_MA0060.1 JASPAR - 38189014 38189029 0.0E+00 TGCAACCAATCAGAGG 16 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 38189029 38189046 3.0E-06 AAGGCCACTAGTTCATTT 18 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 38186779 38186789 1.0E-06 GTCAACAAACA 11 SP4_C2H2_full_monomeric_17_1 SELEX - 38186802 38186818 6.0E-06 CAAGCTCCGCCCCCGTT 17 CTCF_C2H2_full_monomeric_17_1 SELEX + 38186917 38186933 3.0E-06 CGCGCCCTCTGGCGGCC 17 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 38187115 38187126 7.0E-06 GAACATTAAAGG 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 38185494 38185504 1.0E-05 GAAAGTAAACA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 38186779 38186789 3.0E-06 GTCAACAAACA 11 Foxd3_MA0041.1 JASPAR + 38185491 38185502 8.0E-06 TTTTGTTTACTT 12 Foxd3_MA0041.1 JASPAR - 38185567 38185578 4.0E-06 GTATGTTTTCTT 12 POU3F1_POU_DBD_monomeric_12_2 SELEX + 38185575 38185586 6.0E-06 ATACATATTTCA 12 FOXB1_forkhead_full_monomeric_9_1 SELEX - 38185493 38185501 7.0E-06 AGTAAACAA 9 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 38188990 38189008 4.0E-06 GTAACCTTTGTAAGTACAC 19 FOXO3_forkhead_full_monomeric_8_1 SELEX - 38185493 38185500 7.0E-06 GTAAACAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 38185490 38185502 2.0E-06 AAGTAAACAAAAT 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 38185567 38185579 5.0E-06 AAGAAAACATACA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 38186777 38186789 0.0E+00 AAGTCAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 38185569 38185581 4.0E-06 GAAAACATACATA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 38185493 38185503 5.0E-06 AAAGTAAACAA 11 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 38189029 38189043 7.0E-06 AAGGCCACTAGTTCA 15 V_FOXP1_01_M00987 TRANSFAC - 38185563 38185582 1.0E-06 ATATGTATGTTTTCTTCCAT 20 V_ATF_01_M00017 TRANSFAC - 38187031 38187044 1.0E-05 TTGTGACGTTTGCC 14 V_XFD1_01_M00267 TRANSFAC - 38185490 38185503 1.0E-06 AAAGTAAACAAAAT 14 V_FOXA2_04_M02749 TRANSFAC - 38185489 38185505 0.0E+00 GGAAAGTAAACAAAATG 17 V_NFY_Q6_M00185 TRANSFAC - 38189017 38189027 6.0E-06 CAACCAATCAG 11 V_FOXD3_01_M00130 TRANSFAC + 38185491 38185502 8.0E-06 TTTTGTTTACTT 12 V_FOXD3_01_M00130 TRANSFAC - 38185567 38185578 8.0E-06 GTATGTTTTCTT 12 V_FOXO4_02_M00476 TRANSFAC + 38185490 38185503 0.0E+00 ATTTTGTTTACTTT 14 V_MMEF2_Q6_M00405 TRANSFAC - 38186356 38186371 3.0E-06 CTTTTTAAATAAGCTC 16 V_SRY_02_M00160 TRANSFAC - 38185489 38185500 9.0E-06 GTAAACAAAATG 12 V_FOXO3A_Q1_M01137 TRANSFAC - 38185490 38185501 1.0E-06 AGTAAACAAAAT 12 V_AP2_Q6_01_M00915 TRANSFAC - 38186491 38186503 4.0E-06 CAGGCCCCAGGCT 13 V_HNF3_Q6_01_M01012 TRANSFAC + 38185489 38185506 2.0E-06 CATTTTGTTTACTTTCCT 18 V_FOXJ1_03_M02750 TRANSFAC - 38185488 38185503 0.0E+00 AAAGTAAACAAAATGA 16 V_HFH4_01_M00742 TRANSFAC + 38185491 38185503 8.0E-06 TTTTGTTTACTTT 13 V_NFY_Q6_01_M00775 TRANSFAC - 38189018 38189030 9.0E-06 TTGCAACCAATCA 13 V_MEF2A_Q6_M02024 TRANSFAC + 38186361 38186370 4.0E-06 TATTTAAAAA 10 V_TAL1_GATA1_01_M02243 TRANSFAC - 38187718 38187735 5.0E-06 GTTCTTTCTTCAGATAAG 18 V_NFY_C_M00209 TRANSFAC + 38189016 38189029 0.0E+00 TCTGATTGGTTGCA 14 V_HMBOX1_01_M01456 TRANSFAC + 38183127 38183143 1.0E-06 TTGTTCTAGTTAACACC 17 V_GC_01_M00255 TRANSFAC + 38186804 38186817 4.0E-06 CGGGGGCGGAGCTT 14 V_FOXO1_02_M00474 TRANSFAC + 38185490 38185503 0.0E+00 ATTTTGTTTACTTT 14 V_HNF3G_Q4_M02015 TRANSFAC - 38186782 38186789 7.0E-06 TGTTTGTT 8 V_SOX7_04_M02911 TRANSFAC - 38187069 38187090 0.0E+00 GTCATAATTGTGTGTCGATGCT 22 V_SOX7_04_M02911 TRANSFAC + 38187793 38187814 5.0E-06 GAGTAAATTGTGTATAAAGGTT 22 V_XFD3_01_M00269 TRANSFAC - 38185490 38185503 0.0E+00 AAAGTAAACAAAAT 14 V_AMEF2_Q6_M00403 TRANSFAC - 38186354 38186371 5.0E-06 CTTTTTAAATAAGCTCTT 18 V_IK1_01_M00086 TRANSFAC + 38186814 38186826 4.0E-06 GCTTGGGAATGCA 13 V_HNF3A_01_M01261 TRANSFAC - 38185493 38185502 1.0E-06 AAGTAAACAA 10 Tal1_Gata1_MA0140.1 JASPAR - 38187718 38187735 5.0E-06 GTTCTTTCTTCAGATAAG 18 V_GR_Q6_M00192 TRANSFAC + 38183106 38183124 1.0E-06 ATGGCACAATCTGTGCTAT 19 V_XFD2_01_M00268 TRANSFAC - 38185490 38185503 5.0E-06 AAAGTAAACAAAAT 14 V_HFH1_01_M00129 TRANSFAC + 38185491 38185502 6.0E-06 TTTTGTTTACTT 12 V_ARID3A_04_M02735 TRANSFAC + 38186356 38186372 7.0E-06 GAGCTTATTTAAAAAGC 17 V_FREAC2_01_M00290 TRANSFAC - 38185490 38185505 1.0E-06 GGAAAGTAAACAAAAT 16 V_CAAT_01_M00254 TRANSFAC - 38189018 38189029 6.0E-06 TGCAACCAATCA 12 V_ALPHACP1_01_M00687 TRANSFAC - 38189017 38189027 3.0E-06 CAACCAATCAG 11 V_TBP_01_M00471 TRANSFAC - 38185477 38185484 8.0E-06 TATAAATT 8 V_NFYC_Q5_M02107 TRANSFAC - 38189014 38189027 3.0E-06 CAACCAATCAGAGG 14 V_MYF6_04_M02885 TRANSFAC + 38186783 38186797 2.0E-06 ACAAACAGCCGCTAC 15 V_FOXL1_04_M02753 TRANSFAC - 38185489 38185505 1.0E-06 GGAAAGTAAACAAAATG 17 V_TEF1_Q6_03_M01817 TRANSFAC + 38185537 38185545 9.0E-06 CAGGAATGT 9 V_PXR_Q2_M00964 TRANSFAC + 38187704 38187715 6.0E-06 GAGGTTAAGAAA 12 V_NFY_01_M00287 TRANSFAC - 38189014 38189029 1.0E-06 TGCAACCAATCAGAGG 16 V_FOXO3_01_M00477 TRANSFAC + 38185490 38185503 0.0E+00 ATTTTGTTTACTTT 14 V_FOXO3_01_M00477 TRANSFAC - 38186776 38186789 8.0E-06 TGTTTGTTGACTTC 14 V_FOXA2_03_M02260 TRANSFAC + 38185494 38185505 7.0E-06 TGTTTACTTTCC 12 V_FOX_Q2_M00809 TRANSFAC + 38185491 38185503 0.0E+00 TTTTGTTTACTTT 13 V_NFAT2_02_M01749 TRANSFAC + 38183092 38183102 1.0E-05 TTCCCTGGAAT 11 V_PLZF_02_M01075 TRANSFAC + 38187795 38187823 3.0E-06 GTAAATTGTGTATAAAGGTTTGTAAGGAG 29 V_HFH3_01_M00289 TRANSFAC + 38185491 38185503 4.0E-06 TTTTGTTTACTTT 13 V_RFX3_05_M02892 TRANSFAC - 38183066 38183088 4.0E-06 ACATCTACTTGGTGACAGCAGAA 23 V_FOXO1_01_M00473 TRANSFAC - 38185492 38185501 3.0E-06 AGTAAACAAA 10 V_HNF3B_Q6_M02014 TRANSFAC + 38185493 38185501 2.0E-06 TTGTTTACT 9 V_MEF2_01_M00006 TRANSFAC + 38187139 38187154 4.0E-06 TGCTAAAGATATCCCC 16 V_FREAC4_01_M00292 TRANSFAC - 38185490 38185505 7.0E-06 GGAAAGTAAACAAAAT 16 V_MEF2A_05_M01301 TRANSFAC + 38186358 38186369 7.0E-06 GCTTATTTAAAA 12 V_NFYA_Q5_M02106 TRANSFAC - 38189014 38189027 0.0E+00 CAACCAATCAGAGG 14 V_MIF1_01_M00279 TRANSFAC + 38189022 38189039 4.0E-06 TGGTTGCAAGGCCACTAG 18 V_FOXK1_03_M02752 TRANSFAC - 38185489 38185505 0.0E+00 GGAAAGTAAACAAAATG 17 V_NF1_Q6_M00193 TRANSFAC + 38187783 38187800 4.0E-06 TCTTGGCAGAGAGTAAAT 18 V_TCF11_01_M00285 TRANSFAC + 38185487 38185499 3.0E-06 GTCATTTTGTTTA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.