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ROM1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6094 retinal outer segment membrane protein 1 chr11 + 62375212 - 62380712 62380212 Transcription Factor Binding Sites   Download all TFBS in the ROM1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 62375456 62375471 2.0E-06 AATCATAATTAATCAC 16 DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 62375459 62375468 1.0E-05 CATAATTAAT 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 62380325 62380335 1.0E-05 GCCCCGCCCCC 11 LHX6_homeodomain_full_dimeric_16_1 SELEX + 62375455 62375470 9.0E-06 CAATCATAATTAATCA 16 LHX6_homeodomain_full_dimeric_16_1 SELEX - 62375455 62375470 5.0E-06 TGATTAATTATGATTG 16 En1_MA0027.1 JASPAR - 62375439 62375449 8.0E-06 AAATAGTGCTC 11 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 62375454 62375471 8.0E-06 GTGATTAATTATGATTGA 18 Dlx1_homeodomain_DBD_monomeric_8_1 SELEX + 62375460 62375467 4.0E-06 ATAATTAA 8 EBF1_EBF_full_dimeric_14_1 SELEX + 62380404 62380417 5.0E-06 ATTCCCAGGGGACG 14 EBF1_EBF_full_dimeric_14_1 SELEX - 62380404 62380417 5.0E-06 CGTCCCCTGGGAAT 14 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 62379182 62379192 1.0E-05 AGCCCCAGGCT 11 POU1F1_POU_DBD_monomeric_14_1 SELEX - 62375359 62375372 7.0E-06 ATGATGCAAATTGA 14 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 62380680 62380694 3.0E-06 GGGCTGACTCAGCAT 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 62380680 62380694 3.0E-06 ATGCTGAGTCAGCCC 15 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 62379182 62379192 9.0E-06 AGCCCCAGGCT 11 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 62375454 62375467 0.0E+00 TCAATCATAATTAA 14 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 62380344 62380362 6.0E-06 GGAGTAGGCCAGGGGGTCA 19 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 62375459 62375468 9.0E-06 CATAATTAAT 10 POU4F3_POU_DBD_monomeric_16_1 SELEX + 62375456 62375471 2.0E-06 AATCATAATTAATCAC 16 Tcfcp2l1_MA0145.1 JASPAR + 62380663 62380676 1.0E-06 CCAGCTCAAGCCGG 14 ETV2_ETS_DBD_monomeric_11_1 SELEX - 62375445 62375455 9.0E-06 GACAGGAAATA 11 POU3F3_POU_DBD_monomeric_13_1 SELEX - 62375360 62375372 4.0E-06 ATGATGCAAATTG 13 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 62375454 62375471 1.0E-06 TCAATCATAATTAATCAC 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 62375454 62375471 3.0E-06 GTGATTAATTATGATTGA 18 ESR1_MA0112.2 JASPAR - 62380644 62380663 1.0E-06 GGCTAATGCCACCCTGACCC 20 SP1_MA0079.2 JASPAR - 62380325 62380334 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 62380392 62380401 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 62380322 62380338 1.0E-06 CTAGCCCCGCCCCCGTA 17 DLX6_homeodomain_DBD_monomeric_8_1 SELEX + 62375460 62375467 9.0E-06 ATAATTAA 8 MAFK_bZIP_full_dimeric_15_1 SELEX + 62380680 62380694 4.0E-06 GGGCTGACTCAGCAT 15 MAFK_bZIP_full_dimeric_15_1 SELEX - 62380680 62380694 3.0E-06 ATGCTGAGTCAGCCC 15 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 62375460 62375467 9.0E-06 TTAATTAT 8 DLX3_homeodomain_DBD_monomeric_8_1 SELEX + 62375460 62375467 9.0E-06 ATAATTAA 8 SP1_C2H2_DBD_monomeric_11_1 SELEX - 62380170 62380180 7.0E-06 ACCCCACCCCC 11 FEV_MA0156.1 JASPAR - 62375446 62375453 1.0E-05 CAGGAAAT 8 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 62379182 62379192 8.0E-06 AGCCCCAGGCT 11 POU2F1_POU_DBD_monomeric_12_1 SELEX - 62375361 62375372 4.0E-06 ATGATGCAAATT 12 ETV6_ETS_full_monomeric_10_1 SELEX - 62380492 62380501 5.0E-06 CGCGGAAGTG 10 NFE2L2_MA0150.1 JASPAR + 62380683 62380693 6.0E-06 CTGACTCAGCA 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 62379182 62379192 6.0E-06 AGCCCCAGGCT 11 POU4F1_POU_DBD_monomeric_14_1 SELEX + 62375456 62375469 7.0E-06 AATCATAATTAATC 14 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 62375460 62375467 8.0E-06 ATAATTAA 8 V_TGIF_01_M00418 TRANSFAC - 62375369 62375379 2.0E-06 AGCTGTCATGA 11 V_AP1_Q2_M00173 TRANSFAC - 62375277 62375287 3.0E-06 AATGACTCAGT 11 V_MEIS1_02_M01419 TRANSFAC - 62375368 62375383 4.0E-06 AGCCAGCTGTCATGAT 16 V_MEIS1_02_M01419 TRANSFAC + 62375445 62375460 9.0E-06 TATTTCCTGTCAATCA 16 V_TEL1_02_M02070 TRANSFAC - 62380492 62380501 8.0E-06 CGCGGAAGTG 10 V_PREP1_01_M01459 TRANSFAC + 62375445 62375460 9.0E-06 TATTTCCTGTCAATCA 16 V_EBF_Q6_M00977 TRANSFAC - 62380406 62380416 4.0E-06 GTCCCCTGGGA 11 V_BACH2_01_M00490 TRANSFAC + 62381976 62381986 8.0E-06 GGTGAGTCAGC 11 V_ZFP410_04_M02936 TRANSFAC + 62379888 62379904 2.0E-06 CCGCCCCGCCCCGTACT 17 V_ESR1_01_M02261 TRANSFAC - 62380644 62380663 1.0E-06 GGCTAATGCCACCCTGACCC 20 V_ZFX_01_M01593 TRANSFAC + 62380302 62380317 9.0E-06 GTCCGGGCCTCGCCGC 16 V_ESE1_01_M01977 TRANSFAC - 62375445 62375454 8.0E-06 ACAGGAAATA 10 V_ZFP740_04_M02938 TRANSFAC - 62379326 62379342 2.0E-06 ATTTCCCCCCCGGTACT 17 V_SATB1_Q3_M01723 TRANSFAC + 62375460 62375475 7.0E-06 ATAATTAATCACCCTA 16 V_SP1_Q6_01_M00931 TRANSFAC - 62379890 62379899 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 62380326 62380335 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 62380509 62380518 7.0E-06 GGGGCGGGGT 10 V_GATA6_05_M02861 TRANSFAC + 62380433 62380449 4.0E-06 GCCCCGATATCTCCGCC 17 V_NFAT3_Q3_M01734 TRANSFAC - 62379617 62379626 6.0E-06 TCTTTTTCCT 10 V_OTX_Q1_M01117 TRANSFAC - 62375462 62375469 5.0E-06 GATTAATT 8 V_HOXA4_01_M01370 TRANSFAC - 62375456 62375472 5.0E-06 GGTGATTAATTATGATT 17 V_SP1_03_M02281 TRANSFAC - 62380325 62380334 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 62380392 62380401 7.0E-06 CCCCGCCCCC 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 62375218 62375229 5.0E-06 GAGATTTCCCAC 12 V_NKX61_03_M01489 TRANSFAC - 62375456 62375472 9.0E-06 GGTGATTAATTATGATT 17 V_OCTAMER_02_M01477 TRANSFAC - 62375456 62375472 2.0E-06 GGTGATTAATTATGATT 17 V_NERF_Q2_M00531 TRANSFAC - 62379272 62379289 3.0E-06 CAGCAGGAAGGGAGCTTT 18 V_NERF_Q2_M00531 TRANSFAC + 62380237 62380254 2.0E-06 CGCCAGGAAGCGCGGGAG 18 V_SP1_02_M01303 TRANSFAC + 62380171 62380181 5.0E-06 GGGGTGGGGTG 11 V_SP1_02_M01303 TRANSFAC + 62380509 62380519 8.0E-06 GGGGCGGGGTC 11 V_PSX1_01_M01435 TRANSFAC + 62375456 62375472 7.0E-06 AATCATAATTAATCACC 17 V_BRN2_01_M00145 TRANSFAC + 62375453 62375468 7.0E-06 GTCAATCATAATTAAT 16 V_PAX6_02_M01391 TRANSFAC - 62375455 62375470 7.0E-06 TGATTAATTATGATTG 16 V_TGIF2_01_M01407 TRANSFAC - 62375368 62375383 9.0E-06 AGCCAGCTGTCATGAT 16 V_TGIF2_01_M01407 TRANSFAC + 62375445 62375460 8.0E-06 TATTTCCTGTCAATCA 16 V_AP1_Q6_M00174 TRANSFAC - 62375277 62375287 1.0E-06 AATGACTCAGT 11 V_COMP1_01_M00057 TRANSFAC - 62375442 62375465 5.0E-06 AATTATGATTGACAGGAAATAGTG 24 V_ZNF219_01_M01122 TRANSFAC + 62380446 62380457 6.0E-06 CGCCCCCCAGCC 12 V_GC_01_M00255 TRANSFAC + 62380539 62380552 1.0E-06 TAGGGGCGGAGTTT 14 V_HELIOSA_02_M01004 TRANSFAC + 62379614 62379624 6.0E-06 AGAAGGAAAAA 11 V_MEIS2_01_M01488 TRANSFAC - 62375368 62375383 6.0E-06 AGCCAGCTGTCATGAT 16 V_MEIS2_01_M01488 TRANSFAC + 62375445 62375460 5.0E-06 TATTTCCTGTCAATCA 16 V_TGIF_02_M01346 TRANSFAC + 62375367 62375383 4.0E-06 CATCATGACAGCTGGCT 17 V_SP4_03_M02810 TRANSFAC - 62380592 62380608 1.0E-06 TAACCCGCCCCCCTGTC 17 V_KROX_Q6_M00982 TRANSFAC - 62380251 62380264 4.0E-06 CCCGCCCCCCCTCC 14 V_AP1_Q6_01_M00925 TRANSFAC - 62375278 62375286 7.0E-06 ATGACTCAG 9 V_AP1_Q4_M00188 TRANSFAC - 62375277 62375287 3.0E-06 AATGACTCAGT 11 V_SP1_Q6_M00196 TRANSFAC - 62379889 62379901 4.0E-06 ACGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 62380324 62380336 2.0E-06 CGGGGGCGGGGCT 13 V_SP1_Q6_M00196 TRANSFAC + 62380507 62380519 7.0E-06 CAGGGGCGGGGTC 13 V_AP2BETA_Q3_M01858 TRANSFAC - 62380448 62380463 2.0E-06 GTTAGGGGCTGGGGGG 16 V_PAX2_01_M00098 TRANSFAC + 62375449 62375467 8.0E-06 TCCTGTCAATCATAATTAA 19 V_OBOX2_01_M01364 TRANSFAC - 62375460 62375476 1.0E-06 TTAGGGTGATTAATTAT 17 V_HIC1_05_M02763 TRANSFAC - 62380646 62380661 6.0E-06 CTAATGCCACCCTGAC 16 V_SZF11_01_M01109 TRANSFAC - 62380340 62380354 2.0E-06 CCAGGGGGTCAGCCG 15 V_REST_01_M01256 TRANSFAC + 62380815 62380836 8.0E-06 TCTGGCTCCTCTCCTGGCTGCT 22 V_OCT1_08_M01354 TRANSFAC + 62375455 62375470 8.0E-06 CAATCATAATTAATCA 16 V_PIT1_01_M01465 TRANSFAC - 62375457 62375473 6.0E-06 GGGTGATTAATTATGAT 17 V_PBX1_05_M01967 TRANSFAC - 62375449 62375462 1.0E-06 TATGATTGACAGGA 14 V_AP1_C_M00199 TRANSFAC - 62375278 62375286 6.0E-06 ATGACTCAG 9 V_CETS1P54_01_M00032 TRANSFAC - 62375445 62375454 1.0E-05 ACAGGAAATA 10 V_HB24_01_M01399 TRANSFAC + 62375458 62375472 1.0E-06 TCATAATTAATCACC 15 V_MAFK_Q3_M02022 TRANSFAC - 62379452 62379462 4.0E-06 TTACTCAGCTT 11 V_MAFK_Q3_M02022 TRANSFAC + 62380684 62380694 0.0E+00 TGACTCAGCAT 11 V_MAFK_Q3_M02022 TRANSFAC + 62381978 62381988 4.0E-06 TGAGTCAGCAA 11 V_STAT4_Q5_M02117 TRANSFAC - 62380550 62380559 1.0E-05 TTACGAGAAA 10 V_PPARA_02_M00518 TRANSFAC + 62380633 62380651 0.0E+00 TCAGGGTATTGGGGTCAGG 19 V_PMX2B_01_M01356 TRANSFAC - 62375456 62375472 8.0E-06 GGTGATTAATTATGATT 17 V_AP1_01_M00517 TRANSFAC + 62381975 62381987 4.0E-06 AGGTGAGTCAGCA 13 V_TEL1_01_M01993 TRANSFAC - 62380492 62380501 8.0E-06 CGCGGAAGTG 10 V_SP1_01_M00008 TRANSFAC + 62380509 62380518 3.0E-06 GGGGCGGGGT 10 V_TGIF1_01_M03111 TRANSFAC + 62375367 62375383 4.0E-06 CATCATGACAGCTGGCT 17 V_LHX3b_01_M01971 TRANSFAC - 62375460 62375469 6.0E-06 GATTAATTAT 10 V_CTCF_01_M01200 TRANSFAC + 62380081 62380100 1.0E-06 GGGGCCTGGAGGGGGCGCTG 20 V_MAF_Q6_01_M00983 TRANSFAC - 62380683 62380693 1.0E-06 TGCTGAGTCAG 11 V_HOXB4_01_M01424 TRANSFAC + 62375456 62375472 7.0E-06 AATCATAATTAATCACC 17 V_SP4_Q5_M01273 TRANSFAC + 62379890 62379900 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 62380325 62380335 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 62380391 62380401 9.0E-06 TCCCCGCCCCC 11 V_AP1_Q4_01_M00926 TRANSFAC + 62375279 62375286 1.0E-05 TGAGTCAT 8 V_HOXA7_02_M01336 TRANSFAC + 62375456 62375472 7.0E-06 AATCATAATTAATCACC 17 V_ZFP187_04_M02934 TRANSFAC + 62375422 62375437 3.0E-06 AAACCCTGGTCCCCTA 16 V_MYOD_Q6_02_M02100 TRANSFAC - 62375372 62375380 4.0E-06 CAGCTGTCA 9 V_OBOX2_02_M03064 TRANSFAC - 62375460 62375476 1.0E-06 TTAGGGTGATTAATTAT 17 V_MRG2_01_M01395 TRANSFAC + 62375445 62375460 2.0E-06 TATTTCCTGTCAATCA 16 V_AP1FJ_Q2_M00172 TRANSFAC - 62375277 62375287 6.0E-06 AATGACTCAGT 11 V_LUN1_01_M00480 TRANSFAC - 62379352 62379368 9.0E-06 TCCCACGTTCCTCGGCA 17 V_PLAG1_01_M01778 TRANSFAC + 62380586 62380601 9.0E-06 GGGGCTGACAGGGGGG 16 V_NKX61_02_M01469 TRANSFAC - 62375457 62375472 5.0E-06 GGTGATTAATTATGAT 16 V_NKX61_02_M01469 TRANSFAC + 62375459 62375474 8.0E-06 CATAATTAATCACCCT 16 V_AIRE_01_M00999 TRANSFAC - 62379621 62379646 7.0E-06 TCTTCTCGTGGTATTTCAGGTCTTTT 26 V_FRA1_Q5_M01267 TRANSFAC + 62375279 62375286 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC - 62380682 62380694 1.0E-06 ATGCTGAGTCAGC 13 V_ASCL2_04_M02841 TRANSFAC + 62380289 62380304 1.0E-06 GTAACCCCTCCCTGTC 16 V_PBX1_02_M00124 TRANSFAC + 62375450 62375464 7.0E-06 CCTGTCAATCATAAT 15 V_EGR1_06_M02744 TRANSFAC - 62380320 62380333 4.0E-06 CCCGCCCCCGTACT 14 V_EGR1_06_M02744 TRANSFAC + 62380393 62380406 7.0E-06 CCCGCCCCCGGATT 14 V_NFE2_01_M00037 TRANSFAC - 62381977 62381987 1.0E-06 TGCTGACTCAC 11 V_PIT1_Q6_M00802 TRANSFAC + 62375455 62375472 2.0E-06 CAATCATAATTAATCACC 18 V_SP1_Q2_01_M00933 TRANSFAC - 62380325 62380334 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 62380392 62380401 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 62380508 62380517 7.0E-06 CCCCGCCCCT 10 V_ARP1_01_M00155 TRANSFAC + 62380711 62380726 6.0E-06 TCCATCCCTGACACCT 16 V_NFE2L2_01_M02263 TRANSFAC + 62380683 62380693 6.0E-06 CTGACTCAGCA 11 V_SP1_Q4_01_M00932 TRANSFAC - 62379889 62379901 4.0E-06 ACGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC + 62380324 62380336 2.0E-06 CGGGGGCGGGGCT 13 V_SP1_Q4_01_M00932 TRANSFAC + 62380507 62380519 9.0E-06 CAGGGGCGGGGTC 13 V_SOX5_04_M02910 TRANSFAC + 62375456 62375470 0.0E+00 AATCATAATTAATCA 15 V_OBOX3_02_M03065 TRANSFAC - 62375460 62375476 3.0E-06 TTAGGGTGATTAATTAT 17 V_FEV_01_M02269 TRANSFAC - 62375446 62375453 1.0E-05 CAGGAAAT 8 V_OBOX3_01_M01466 TRANSFAC - 62375460 62375476 3.0E-06 TTAGGGTGATTAATTAT 17 V_SOX14_03_M02798 TRANSFAC + 62375453 62375468 6.0E-06 GTCAATCATAATTAAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.