Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ABCE1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6059 ATP-binding cassette, sub-family E (OABP), member 1 chr4 + 146014155 - 146019655 146019155 Transcription Factor Binding Sites   Download all TFBS in the ABCE1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 146020029 146020039 2.0E-06 AATGAGTCATG 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 146020029 146020039 1.0E-06 CATGACTCATT 11 SOX10_HMG_full_dimeric_14_1 SELEX + 146018898 146018911 9.0E-06 TGAATGTCCTGTTA 14 SPIC_ETS_full_monomeric_14_1 SELEX - 146020987 146021000 6.0E-06 GAAAAAAGGAAGTG 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 146020944 146020960 7.0E-06 CAATTATTTTGGCTTTA 17 YY2_C2H2_full_dimeric_12_1 SELEX + 146020043 146020054 2.0E-06 TCTTGCCGCCAT 12 FOXF2_MA0030.1 JASPAR - 146019220 146019233 8.0E-06 CTAGCGTAAACAGA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 146020852 146020868 2.0E-06 ATAAACTACAATAAGCA 17 En1_MA0027.1 JASPAR + 146020162 146020172 2.0E-06 AAGTAGTTTCC 11 YY1_C2H2_full_monomeric_11_1 SELEX + 146019463 146019473 3.0E-06 ACCGCCATTTT 11 HNF1B_MA0153.1 JASPAR + 146018773 146018784 5.0E-06 TCAATAAGTAAT 12 EWSR1-FLI1_MA0149.1 JASPAR - 146020984 146021001 4.0E-06 GGAAAAAAGGAAGTGAGG 18 SOX8_HMG_DBD_dimeric_14_1 SELEX + 146018898 146018911 6.0E-06 TGAATGTCCTGTTA 14 XBP1_bZIP_DBD_dimeric_12_1 SELEX + 146019363 146019374 2.0E-06 AATGACGTCATA 12 XBP1_bZIP_DBD_dimeric_12_1 SELEX - 146019363 146019374 1.0E-06 TATGACGTCATT 12 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 146018755 146018765 8.0E-06 AGCCTCAGGCC 11 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 146019363 146019374 0.0E+00 AATGACGTCATA 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 146019363 146019374 0.0E+00 TATGACGTCATT 12 SPIB_ETS_DBD_monomeric_14_1 SELEX - 146020987 146021000 1.0E-06 GAAAAAAGGAAGTG 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 146020966 146020981 2.0E-06 TAAATGCTTCTAAGTA 16 JDP2_bZIP_full_dimeric_12_1 SELEX + 146019363 146019374 1.0E-06 AATGACGTCATA 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 146019363 146019374 1.0E-06 TATGACGTCATT 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 146020966 146020981 1.0E-06 TAAATGCTTCTAAGTA 16 CUX1_CUT_DBD_dimeric_18_1 SELEX + 146018792 146018809 9.0E-06 ATGAATAAACAGATGAAT 18 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 146021015 146021031 8.0E-06 AATGACACTGAGGGTCA 17 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 146019186 146019194 8.0E-06 GTAAAAAAA 9 Foxq1_MA0040.1 JASPAR - 146020851 146020861 6.0E-06 TGTAGTTTATT 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 146018792 146018802 1.0E-05 ATGAATAAACA 11 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 146019362 146019375 0.0E+00 CAATGACGTCATAT 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 146019362 146019375 0.0E+00 ATATGACGTCATTG 14 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX + 146021014 146021027 3.0E-06 GAATGACACTGAGG 14 FOXI1_MA0042.1 JASPAR + 146019982 146019993 6.0E-06 GCATATTTGGTT 12 CREB3_bZIP_full_dimeric_14_1 SELEX + 146019362 146019375 2.0E-06 CAATGACGTCATAT 14 CREB3_bZIP_full_dimeric_14_1 SELEX - 146019362 146019375 3.0E-06 ATATGACGTCATTG 14 YY2_C2H2_full_monomeric_11_1 SELEX + 146019463 146019473 0.0E+00 ACCGCCATTTT 11 MZF1_5-13_MA0057.1 JASPAR + 146022403 146022412 8.0E-06 CTAGGGGGAA 10 JDP2_bZIP_full_dimeric_9_1 SELEX + 146020030 146020038 4.0E-06 ATGAGTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 146020030 146020038 2.0E-06 ATGACTCAT 9 Myf_MA0055.1 JASPAR - 146019319 146019330 1.0E-05 AGCCAGCTGCTG 12 Myf_MA0055.1 JASPAR + 146019677 146019688 1.0E-05 AGACAGCAGCAG 12 FOXC1_MA0032.1 JASPAR - 146018709 146018716 7.0E-06 AGTAAGTA 8 SPI1_ETS_full_monomeric_14_1 SELEX - 146020987 146021000 1.0E-06 GAAAAAAGGAAGTG 14 TP53_MA0106.1 JASPAR - 146022443 146022462 3.0E-06 CCAGGCATGTTCTTGCTTCA 20 Sox2_MA0143.1 JASPAR - 146019132 146019146 9.0E-06 CCTTAGTCATTCTAA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 146018790 146018802 7.0E-06 GAATGAATAAACA 13 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 146019362 146019375 2.0E-06 CAATGACGTCATAT 14 BATF3_bZIP_DBD_dimeric_14_1 SELEX - 146019362 146019375 3.0E-06 ATATGACGTCATTG 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 146019180 146019192 3.0E-06 GCAAACGTAAAAA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 146022430 146022439 9.0E-06 AGTGCCAAGA 10 ZNF784_C2H2_full_monomeric_10_1 SELEX + 146019380 146019389 4.0E-06 CTACCTACCT 10 IRF2_MA0051.1 JASPAR + 146019506 146019523 7.0E-06 GAAAAGTGAAGGCAAGAG 18 V_FOXP1_01_M00987 TRANSFAC - 146018913 146018932 0.0E+00 TTATTTCTATCTTTTTTTAG 20 RXR_RAR_DR5_MA0159.1 JASPAR + 146019044 146019060 7.0E-06 AGTTGAGAGGAAGTTGA 17 V_SPI1_01_M01203 TRANSFAC - 146020984 146021000 1.0E-06 GAAAAAAGGAAGTGAGG 17 V_TGIF_01_M00418 TRANSFAC + 146018059 146018069 1.0E-06 AGCTGTCAAAA 11 V_MEIS1_02_M01419 TRANSFAC + 146018055 146018070 2.0E-06 CTCTAGCTGTCAAAAG 16 V_E2A_Q6_01_M02088 TRANSFAC - 146019318 146019330 5.0E-06 AGCCAGCTGCTGG 13 V_STAT5A_Q6_M01890 TRANSFAC + 146020116 146020128 1.0E-06 GCTTTTCTCAGAA 13 V_DBX1_01_M01483 TRANSFAC - 146018774 146018790 3.0E-06 CAGTAAATTACTTATTG 17 V_TCF3_01_M01594 TRANSFAC + 146020917 146020929 3.0E-06 TCTTTGAAATGCT 13 V_MEQCJUN_02_M02048 TRANSFAC + 146019363 146019373 0.0E+00 AATGACGTCAT 11 V_MEQCJUN_02_M02048 TRANSFAC - 146019364 146019374 2.0E-06 TATGACGTCAT 11 V_FLI1_Q6_M01208 TRANSFAC - 146020985 146020995 9.0E-06 AAGGAAGTGAG 11 V_AR_02_M00953 TRANSFAC - 146020119 146020145 5.0E-06 TAGCTGCGTACACGCTGTTCTGAGAAA 27 V_BACH2_01_M00490 TRANSFAC + 146020029 146020039 9.0E-06 AATGAGTCATG 11 V_YY1_02_M00069 TRANSFAC + 146019461 146019480 7.0E-06 GCACCGCCATTTTGGCCGGT 20 V_EVI1_04_M00081 TRANSFAC + 146019007 146019021 5.0E-06 GGAAAAGATTGGATT 15 V_BCL6_01_M01183 TRANSFAC - 146018067 146018082 2.0E-06 TCTTAAATAAAACTTT 16 V_MMEF2_Q6_M00405 TRANSFAC - 146018069 146018084 6.0E-06 GGTCTTAAATAAAACT 16 V_SPIB_02_M02041 TRANSFAC + 146019049 146019058 8.0E-06 AGAGGAAGTT 10 V_HOXA13_02_M01297 TRANSFAC - 146018070 146018078 1.0E-06 AAATAAAAC 9 V_AR_Q6_01_M01996 TRANSFAC - 146020124 146020138 1.0E-06 GTACACGCTGTTCTG 15 V_CREB_Q4_01_M00917 TRANSFAC + 146019362 146019372 3.0E-06 CAATGACGTCA 11 V_CREB_Q4_01_M00917 TRANSFAC - 146019365 146019375 6.0E-06 ATATGACGTCA 11 V_IRF2_Q6_M01882 TRANSFAC + 146019505 146019520 8.0E-06 TGAAAAGTGAAGGCAA 16 V_POU1F1_Q6_M00744 TRANSFAC + 146018792 146018801 6.0E-06 ATGAATAAAC 10 V_ATF3_Q6_01_M01863 TRANSFAC + 146019364 146019374 9.0E-06 ATGACGTCATA 11 V_HNF3_Q6_01_M01012 TRANSFAC - 146018790 146018807 3.0E-06 TCATCTGTTTATTCATTC 18 V_MAF_Q6_M00648 TRANSFAC + 146019047 146019062 8.0E-06 TGAGAGGAAGTTGAGG 16 V_JUNDM2_03_M02772 TRANSFAC + 146019361 146019376 1.0E-06 TCAATGACGTCATATC 16 V_JUNDM2_03_M02772 TRANSFAC - 146019361 146019376 1.0E-06 GATATGACGTCATTGA 16 V_PU1_Q4_M01172 TRANSFAC + 146020981 146020999 0.0E+00 ATTCCTCACTTCCTTTTTT 19 V_GM497_04_M02864 TRANSFAC + 146018689 146018704 4.0E-06 ATCGGCACACAAGCAC 16 V_TCFAP2E_04_M02926 TRANSFAC + 146018910 146018923 1.0E-06 TACCTAAAAAAAGA 14 V_TCFAP2E_04_M02926 TRANSFAC + 146019183 146019196 2.0E-06 AACGTAAAAAAAGA 14 V_CDX_Q5_M00991 TRANSFAC + 146018916 146018933 5.0E-06 AAAAAAGATAGAAATAAA 18 V_LDSPOLYA_B_M00317 TRANSFAC - 146018791 146018806 1.0E-06 CATCTGTTTATTCATT 16 V_AR_03_M00956 TRANSFAC - 146020119 146020145 4.0E-06 TAGCTGCGTACACGCTGTTCTGAGAAA 27 V_STAT4_Q4_M01666 TRANSFAC - 146020115 146020128 4.0E-06 TTCTGAGAAAAGCA 14 V_TGIF2_01_M01407 TRANSFAC + 146018055 146018070 0.0E+00 CTCTAGCTGTCAAAAG 16 V_AP1_Q6_M00174 TRANSFAC - 146020029 146020039 4.0E-06 CATGACTCATT 11 V_PAX5_02_M00144 TRANSFAC - 146019389 146019416 2.0E-06 GACATAGAGCGTGAGGCGGAACCCTGGA 28 V_ELF4_04_M02850 TRANSFAC - 146018066 146018082 6.0E-06 TCTTAAATAAAACTTTT 17 V_ELF4_04_M02850 TRANSFAC - 146018067 146018083 7.0E-06 GTCTTAAATAAAACTTT 17 V_ELF4_04_M02850 TRANSFAC - 146018068 146018084 2.0E-06 GGTCTTAAATAAAACTT 17 V_BACH1_01_M00495 TRANSFAC + 146020027 146020041 1.0E-06 GGAATGAGTCATGGC 15 V_MEIS2_01_M01488 TRANSFAC + 146018055 146018070 2.0E-06 CTCTAGCTGTCAAAAG 16 V_MYF_01_M01302 TRANSFAC - 146019319 146019330 1.0E-05 AGCCAGCTGCTG 12 V_MYF_01_M01302 TRANSFAC + 146019677 146019688 1.0E-05 AGACAGCAGCAG 12 V_TGIF_02_M01346 TRANSFAC - 146018055 146018071 5.0E-06 ACTTTTGACAGCTAGAG 17 V_SPI1_03_M02078 TRANSFAC + 146019049 146019058 2.0E-06 AGAGGAAGTT 10 V_LMX1_01_M01409 TRANSFAC - 146018068 146018084 8.0E-06 GGTCTTAAATAAAACTT 17 V_HOXB13_01_M01467 TRANSFAC + 146020846 146020861 4.0E-06 AGACTAATAAACTACA 16 V_POLY_C_M00212 TRANSFAC - 146018061 146018078 1.0E-06 AAATAAAACTTTTGACAG 18 V_IRF2_01_M00063 TRANSFAC + 146019506 146019518 2.0E-06 GAAAAGTGAAGGC 13 V_AP1_Q6_01_M00925 TRANSFAC - 146020030 146020038 4.0E-06 ATGACTCAT 9 V_HNF1B_04_M02266 TRANSFAC + 146018773 146018784 5.0E-06 TCAATAAGTAAT 12 V_HNF3_Q6_M00791 TRANSFAC + 146018792 146018804 0.0E+00 ATGAATAAACAGA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 146018792 146018802 5.0E-06 TGTTTATTCAT 11 V_SOX_Q6_M01014 TRANSFAC + 146021090 146021102 5.0E-06 TTCTTTGTTTGCA 13 V_ELF5_01_M01197 TRANSFAC - 146020987 146020997 6.0E-06 AAAAGGAAGTG 11 V_YY1_Q6_02_M01035 TRANSFAC + 146019463 146019473 1.0E-06 ACCGCCATTTT 11 V_GR_01_M00955 TRANSFAC - 146020119 146020145 1.0E-06 TAGCTGCGTACACGCTGTTCTGAGAAA 27 V_HBP1_03_M02762 TRANSFAC + 146018785 146018800 0.0E+00 TTACTGAATGAATAAA 16 V_ZBRK1_01_M01105 TRANSFAC - 146016042 146016056 9.0E-06 GGGTGGCAGTCCTTT 15 V_MEF2_04_M00233 TRANSFAC + 146018905 146018926 9.0E-06 CCTGTTACCTAAAAAAAGATAG 22 V_PEBP_Q6_M00984 TRANSFAC + 146019033 146019047 1.0E-05 ACTGACCACACAGTT 15 V_GRE_C_M00205 TRANSFAC - 146020124 146020139 1.0E-06 CGTACACGCTGTTCTG 16 V_SPIB_01_M01204 TRANSFAC - 146020984 146021000 5.0E-06 GAAAAAAGGAAGTGAGG 17 V_AP1_C_M00199 TRANSFAC + 146020030 146020038 8.0E-06 ATGAGTCAT 9 V_XFD2_01_M00268 TRANSFAC + 146018793 146018806 5.0E-06 TGAATAAACAGATG 14 V_MEF2_Q6_01_M00941 TRANSFAC + 146018069 146018080 3.0E-06 AGTTTTATTTAA 12 V_MEF2_Q6_01_M00941 TRANSFAC - 146018913 146018924 1.0E-05 ATCTTTTTTTAG 12 V_ATF3_Q6_M00513 TRANSFAC - 146019362 146019375 2.0E-06 ATATGACGTCATTG 14 V_NKX3A_01_M00451 TRANSFAC + 146018774 146018785 2.0E-06 CAATAAGTAATT 12 V_VMYB_01_M00003 TRANSFAC + 146018718 146018727 3.0E-06 AATAACGGCA 10 V_STAT4_Q5_M02117 TRANSFAC - 146020119 146020128 5.0E-06 TTCTGAGAAA 10 V_ARID3A_04_M02735 TRANSFAC - 146018068 146018084 1.0E-06 GGTCTTAAATAAAACTT 17 V_TGIF1_01_M03111 TRANSFAC - 146018055 146018071 5.0E-06 ACTTTTGACAGCTAGAG 17 V_LHX3b_01_M01971 TRANSFAC + 146018778 146018787 5.0E-06 AAGTAATTTA 10 V_SOX11_03_M02795 TRANSFAC - 146021025 146021041 5.0E-06 ACTAGAACAATGACCCT 17 V_SOX11_03_M02795 TRANSFAC - 146021087 146021103 1.0E-05 CTGCAAACAAAGAAGGA 17 V_IRF7_01_M00453 TRANSFAC + 146021064 146021081 8.0E-06 TTCGAATCTGAAATATCC 18 V_NEUROD_02_M01288 TRANSFAC - 146019677 146019688 1.0E-06 CTGCTGCTGTCT 12 V_NEUROD_02_M01288 TRANSFAC - 146019710 146019721 2.0E-06 TTCCAGCTGTCC 12 V_HFH8_01_M00294 TRANSFAC - 146018793 146018805 6.0E-06 ATCTGTTTATTCA 13 V_CREM_Q6_M01820 TRANSFAC - 146019362 146019372 8.0E-06 TGACGTCATTG 11 V_AP1_Q4_01_M00926 TRANSFAC + 146020031 146020038 1.0E-05 TGAGTCAT 8 V_YY1_03_M02044 TRANSFAC + 146019463 146019474 1.0E-06 ACCGCCATTTTG 12 V_VJUN_01_M00036 TRANSFAC + 146019361 146019376 0.0E+00 TCAATGACGTCATATC 16 V_VJUN_01_M00036 TRANSFAC - 146019361 146019376 1.0E-06 GATATGACGTCATTGA 16 V_MRG2_01_M01395 TRANSFAC + 146018055 146018070 4.0E-06 CTCTAGCTGTCAAAAG 16 V_FAC1_01_M00456 TRANSFAC - 146020833 146020846 9.0E-06 TTACAAAACACGTA 14 V_FOXJ3_06_M02855 TRANSFAC - 146020943 146020959 7.0E-06 AAAGCCAAAATAATTGT 17 V_CBF_01_M01079 TRANSFAC - 146021074 146021089 7.0E-06 GGATTTGCGGATATTT 16 V_PLAG1_01_M01778 TRANSFAC - 146019925 146019940 8.0E-06 GGGGTACTAGAGAGTG 16 V_MYCMAX_B_M00322 TRANSFAC - 146019687 146019696 7.0E-06 GCCACGCGCT 10 V_ATF1_03_M02738 TRANSFAC + 146019361 146019376 1.0E-06 TCAATGACGTCATATC 16 V_ATF1_03_M02738 TRANSFAC - 146019361 146019376 0.0E+00 GATATGACGTCATTGA 16 V_ATF2_Q5_M01862 TRANSFAC + 146019362 146019373 1.0E-06 CAATGACGTCAT 12 V_ATF2_Q5_M01862 TRANSFAC - 146019364 146019375 2.0E-06 ATATGACGTCAT 12 V_NKX22_01_M00485 TRANSFAC - 146018699 146018708 6.0E-06 TCAAGTGCTT 10 V_FRA1_Q5_M01267 TRANSFAC + 146020031 146020038 1.0E-05 TGAGTCAT 8 V_SRF_01_M00152 TRANSFAC + 146019978 146019995 4.0E-06 ATGTGCATATTTGGTTGT 18 V_SPIC_02_M02077 TRANSFAC + 146019049 146019058 1.0E-06 AGAGGAAGTT 10 V_STAT1STAT1_Q3_M01212 TRANSFAC + 146020118 146020130 8.0E-06 TTTTCTCAGAACA 13 V_PLZF_02_M01075 TRANSFAC - 146018771 146018799 2.0E-06 TTATTCATTCAGTAAATTACTTATTGAGC 29 V_PLZF_02_M01075 TRANSFAC - 146020944 146020972 7.0E-06 GCATTTACAGTCTAAAGCCAAAATAATTG 29 V_RXR_RAR_01_M02272 TRANSFAC + 146019044 146019060 7.0E-06 AGTTGAGAGGAAGTTGA 17 V_SOX2_01_M02246 TRANSFAC - 146019132 146019146 9.0E-06 CCTTAGTCATTCTAA 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 146020984 146021001 4.0E-06 GGAAAAAAGGAAGTGAGG 18 V_VDR_Q3_M00444 TRANSFAC - 146019854 146019868 3.0E-06 GGGTAAAGGGGGAGT 15 V_YY1_01_M00059 TRANSFAC - 146018990 146019006 1.0E-06 GAGCTCCATATTTTATC 17 V_YY1_01_M00059 TRANSFAC - 146019954 146019970 2.0E-06 TATATCCATTTTGGGTG 17 V_PR_02_M00957 TRANSFAC - 146020119 146020145 6.0E-06 TAGCTGCGTACACGCTGTTCTGAGAAA 27 V_IRF1_01_M00062 TRANSFAC + 146019506 146019518 9.0E-06 GAAAAGTGAAGGC 13 V_IRF1_01_M00062 TRANSFAC - 146021039 146021051 3.0E-06 CAAAATTGACACT 13 V_SOX12_03_M02796 TRANSFAC + 146021029 146021042 5.0E-06 TCATTGTTCTAGTG 14 V_SOX5_07_M02909 TRANSFAC - 146020937 146020953 8.0E-06 AAAATAATTGTAACGCT 17 V_LTF_Q6_M01692 TRANSFAC + 146018831 146018839 1.0E-05 GTCACTTGC 9 V_ATF_B_M00338 TRANSFAC - 146019362 146019373 1.0E-06 ATGACGTCATTG 12 V_TCF3_05_M02920 TRANSFAC + 146018910 146018924 8.0E-06 TACCTAAAAAAAGAT 15 V_TCF3_05_M02920 TRANSFAC + 146019183 146019197 5.0E-06 AACGTAAAAAAAGAT 15 V_GLIS2_04_M02863 TRANSFAC + 146018069 146018082 8.0E-06 AGTTTTATTTAAGA 14 V_AR_01_M00481 TRANSFAC - 146020125 146020139 6.0E-06 CGTACACGCTGTTCT 15 V_AR_Q2_M00447 TRANSFAC - 146019914 146019928 2.0E-06 AGTGCTGTAAGTTCT 15 V_PAX2_02_M00486 TRANSFAC + 146020851 146020859 8.0E-06 AATAAACTA 9 V_SPI1_02_M02043 TRANSFAC + 146019049 146019058 6.0E-06 AGAGGAAGTT 10 V_SPIB_03_M02076 TRANSFAC + 146019049 146019058 2.0E-06 AGAGGAAGTT 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.