Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HAPLN2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 60484 hyaluronan and proteoglycan link protein 2 chr1 + 156584085 - 156589585 156589085 Transcription Factor Binding Sites   Download all TFBS in the HAPLN2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFIA_NFI_full_dimeric_15_1 SELEX + 156586423 156586437 0.0E+00 TTGGCAGGAAGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 156586423 156586437 0.0E+00 TTGGCTTCCTGCCAA 15 ESR2_MA0258.1 JASPAR + 156586447 156586464 2.0E-06 CTGGATCAGGGTGTCCTG 18 SRF_MADS_DBD_dimeric_12_1 SELEX - 156586254 156586265 6.0E-06 TCCATAAAAGGC 12 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 156586265 156586273 3.0E-06 TATGTAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 156586265 156586273 4.0E-06 TATGTAAAT 9 NFIX_NFI_full_dimeric_15_2 SELEX + 156586423 156586437 1.0E-06 TTGGCAGGAAGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 156586423 156586437 1.0E-06 TTGGCTTCCTGCCAA 15 POU2F2_POU_DBD_monomeric_11_1 SELEX - 156586264 156586274 8.0E-06 GTATGTAAATC 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 156586265 156586273 4.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 156586265 156586273 5.0E-06 TATGTAAAT 9 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 156586130 156586143 5.0E-06 GTAAACTAAACACA 14 ESR1_MA0112.2 JASPAR - 156586449 156586468 6.0E-06 TGGACAGGACACCCTGATCC 20 FOXI1_MA0042.1 JASPAR + 156586408 156586419 3.0E-06 GGCTGTTTGTTT 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 156586411 156586421 7.0E-06 TCAAACAAACA 11 TBX20_TBX_full_dimeric_16_1 SELEX + 156585803 156585818 2.0E-06 AAGTGTCATCTTGCCA 16 NFIB_NFI_full_dimeric_15_1 SELEX + 156586423 156586437 1.0E-06 TTGGCAGGAAGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 156586423 156586437 1.0E-06 TTGGCTTCCTGCCAA 15 LHX6_homeodomain_full_dimeric_12_1 SELEX + 156585866 156585877 1.0E-05 TGCTTGCCATCA 12 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 156586457 156586475 8.0E-06 GTGTCCTGTCCAAGGAGAC 19 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 156586411 156586423 9.0E-06 ACTCAAACAAACA 13 TBX1_TBX_DBD_dimeric_20_1 SELEX + 156585933 156585952 1.0E-05 GGGTGTTAGAGAAGGAGATG 20 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 156586130 156586143 9.0E-06 GTAAACTAAACACA 14 V_MEIS1_02_M01419 TRANSFAC + 156586209 156586224 8.0E-06 TTGCATCTGTCAAATA 16 V_XVENT1_01_M00445 TRANSFAC + 156586479 156586491 0.0E+00 GGGCTATTTGTCT 13 V_SMAD3_Q6_01_M01888 TRANSFAC + 156589195 156589207 2.0E-06 GGACAGACAGACA 13 V_SMAD3_Q6_01_M01888 TRANSFAC + 156589199 156589211 1.0E-06 AGACAGACAGACA 13 V_SMAD3_Q6_01_M01888 TRANSFAC + 156589203 156589215 1.0E-06 AGACAGACAGACA 13 V_SMAD3_Q6_01_M01888 TRANSFAC + 156589207 156589219 9.0E-06 AGACAGACAGGGG 13 V_NF1_Q6_01_M00806 TRANSFAC - 156586421 156586437 2.0E-06 TTGGCTTCCTGCCAACT 17 V_ESR1_01_M02261 TRANSFAC - 156586449 156586468 6.0E-06 TGGACAGGACACCCTGATCC 20 V_NF1A_Q6_M02103 TRANSFAC - 156586422 156586437 3.0E-06 TTGGCTTCCTGCCAAC 16 V_NF1A_Q6_M02103 TRANSFAC + 156586423 156586438 9.0E-06 TTGGCAGGAAGCCAAT 16 V_MTF1_Q4_M00650 TRANSFAC - 156586596 156586609 4.0E-06 ACTGCACCCGGCCG 14 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 156586215 156586226 4.0E-06 ACTATTTGACAG 12 V_OCT1_Q5_01_M00930 TRANSFAC + 156586263 156586273 8.0E-06 GGATTTACATA 11 V_POU2F3_01_M01476 TRANSFAC - 156586261 156586276 6.0E-06 TGGTATGTAAATCCAT 16 V_HNF4A_04_M02764 TRANSFAC - 156585261 156585277 9.0E-06 CTTCTGGGTTCAAGTGA 17 V_PU1_Q4_M01172 TRANSFAC + 156586383 156586401 5.0E-06 TATATCTACTTCTCCCTCT 19 V_LDSPOLYA_B_M00317 TRANSFAC - 156589192 156589207 8.0E-06 TGTCTGTCTGTCCTTT 16 V_TGIF2_01_M01407 TRANSFAC + 156586209 156586224 7.0E-06 TTGCATCTGTCAAATA 16 V_PPARGRXRA_01_M02262 TRANSFAC + 156589317 156589331 1.0E-05 AGAGGGCAGAGGTGA 15 V_NFY_C_M00209 TRANSFAC - 156586429 156586442 6.0E-06 TCTGATTGGCTTCC 14 V_SRF_C_M00215 TRANSFAC + 156586254 156586268 3.0E-06 GCCTTTTATGGATTT 15 V_TAL1_Q6_M00993 TRANSFAC - 156589248 156589257 3.0E-06 TCCAGCTGCT 10 V_SOX13_03_M02797 TRANSFAC + 156586315 156586330 8.0E-06 AAAGGAACAGTAAATT 16 V_MEIS2_01_M01488 TRANSFAC + 156586209 156586224 8.0E-06 TTGCATCTGTCAAATA 16 V_HNF3G_Q4_M02015 TRANSFAC + 156586411 156586418 7.0E-06 TGTTTGTT 8 V_GATA3_05_M02859 TRANSFAC - 156586566 156586587 9.0E-06 CTTGAGAGATCTGATTGACTAT 22 Hand1_Tcfe2a_MA0092.1 JASPAR + 156585968 156585977 7.0E-06 TGTCTGGAAT 10 V_HOXB9_01_M01426 TRANSFAC - 156586253 156586268 9.0E-06 AAATCCATAAAAGGCT 16 V_MAZ_Q6_01_M02023 TRANSFAC + 156586519 156586532 9.0E-06 GGAGGAGGGAAGCG 14 V_TATA_C_M00216 TRANSFAC - 156586256 156586265 6.0E-06 TCCATAAAAG 10 V_OCT1_04_M00138 TRANSFAC - 156586258 156586280 3.0E-06 TCTCTGGTATGTAAATCCATAAA 23 V_AR_04_M01201 TRANSFAC + 156586449 156586463 3.0E-06 GGATCAGGGTGTCCT 15 V_SRF_Q5_02_M01007 TRANSFAC + 156586250 156586268 2.0E-06 CTCAGCCTTTTATGGATTT 19 V_CTCF_02_M01259 TRANSFAC + 156589306 156589325 3.0E-06 ACTCAGGCACCAGAGGGCAG 20 V_CTCF_01_M01200 TRANSFAC + 156589308 156589327 3.0E-06 TCAGGCACCAGAGGGCAGAG 20 V_SRF_03_M01304 TRANSFAC - 156586254 156586266 0.0E+00 ATCCATAAAAGGC 13 V_OCT_Q6_M00795 TRANSFAC + 156586263 156586273 8.0E-06 GGATTTACATA 11 V_FOXO1_Q5_M01216 TRANSFAC - 156586202 156586210 5.0E-06 AAAAACAAC 9 V_HBP1_04_M02866 TRANSFAC - 156589144 156589160 2.0E-06 ATTTCCCATTGTCTCTG 17 V_GFI1_Q6_M01067 TRANSFAC - 156586298 156586310 2.0E-06 ACAAATCACTTCT 13 V_ALPHACP1_01_M00687 TRANSFAC + 156586431 156586441 3.0E-06 AAGCCAATCAG 11 V_TTF1_Q5_M02034 TRANSFAC - 156586579 156586592 5.0E-06 ATACTCTTGAGAGA 14 V_NFYC_Q5_M02107 TRANSFAC + 156586431 156586444 5.0E-06 AAGCCAATCAGATG 14 V_POU5F1_01_M01307 TRANSFAC - 156586206 156586215 6.0E-06 GATGCAAAAA 10 V_GABPBETA_Q3_M01876 TRANSFAC - 156593958 156593968 8.0E-06 AGCGGAAGGGC 11 V_TAL1_01_M01591 TRANSFAC - 156589182 156589194 4.0E-06 TTTCCTTCTCAGT 13 V_OCT2_01_M01368 TRANSFAC - 156586261 156586276 9.0E-06 TGGTATGTAAATCCAT 16 V_LUN1_01_M00480 TRANSFAC - 156589242 156589258 1.0E-05 TTCCAGCTGCTTCAAGA 17 V_MYOGNF1_01_M00056 TRANSFAC + 156586411 156586439 2.0E-06 TGTTTGTTTGAGTTGGCAGGAAGCCAATC 29 V_MYOGNF1_01_M00056 TRANSFAC - 156586421 156586449 5.0E-06 CAGTGCATCTGATTGGCTTCCTGCCAACT 29 V_GFI1B_01_M01058 TRANSFAC - 156586298 156586309 2.0E-06 CAAATCACTTCT 12 V_NFY_01_M00287 TRANSFAC + 156586429 156586444 7.0E-06 GGAAGCCAATCAGATG 16 V_FPM315_01_M01587 TRANSFAC + 156586513 156586524 2.0E-06 GTGGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 156586516 156586527 4.0E-06 GGAGGAGGAGGG 12 V_ASCL2_04_M02841 TRANSFAC - 156589170 156589185 4.0E-06 CAGTCCCCACCCCATC 16 V_SREBP_Q3_M00776 TRANSFAC + 156585297 156585308 9.0E-06 ATGATCACACCA 12 V_HSF_Q6_M00641 TRANSFAC - 156589246 156589258 6.0E-06 TTCCAGCTGCTTC 13 V_SRF_02_M01257 TRANSFAC - 156586249 156586266 1.0E-05 ATCCATAAAAGGCTGAGT 18 V_HFH3_01_M00289 TRANSFAC + 156586408 156586420 6.0E-06 GGCTGTTTGTTTG 13 V_SMAD3_Q6_M00701 TRANSFAC - 156589199 156589207 3.0E-06 TGTCTGTCT 9 V_SMAD3_Q6_M00701 TRANSFAC - 156589203 156589211 3.0E-06 TGTCTGTCT 9 V_SMAD3_Q6_M00701 TRANSFAC - 156589207 156589215 3.0E-06 TGTCTGTCT 9 V_SOX1_03_M02802 TRANSFAC + 156586147 156586162 4.0E-06 TGGCTATTCATTATAT 16 V_CTF1_01_M01196 TRANSFAC - 156586423 156586436 5.0E-06 TGGCTTCCTGCCAA 14 V_CTF1_01_M01196 TRANSFAC + 156586424 156586437 0.0E+00 TGGCAGGAAGCCAA 14 V_FOXO4_01_M00472 TRANSFAC - 156586200 156586210 6.0E-06 AAAAACAACCC 11 V_ZFP128_04_M02932 TRANSFAC + 156586156 156586169 9.0E-06 ATTATATGTATTCC 14 V_ZFP128_04_M02932 TRANSFAC - 156586156 156586169 3.0E-06 GGAATACATATAAT 14 V_NFYA_Q5_M02106 TRANSFAC + 156586431 156586444 2.0E-06 AAGCCAATCAGATG 14 TLX1_NFIC_MA0119.1 JASPAR - 156586423 156586436 5.0E-06 TGGCTTCCTGCCAA 14 TLX1_NFIC_MA0119.1 JASPAR + 156586424 156586437 0.0E+00 TGGCAGGAAGCCAA 14 V_AR_01_M00481 TRANSFAC + 156586449 156586463 5.0E-06 GGATCAGGGTGTCCT 15 V_SMAD1_01_M01590 TRANSFAC - 156586177 156586188 5.0E-06 AATGAGAAAGGA 12 PPARG_RXRA_MA0065.2 JASPAR + 156589317 156589331 1.0E-05 AGAGGGCAGAGGTGA 15 V_ESR2_01_M02377 TRANSFAC + 156586447 156586464 2.0E-06 CTGGATCAGGGTGTCCTG 18 V_NF1_Q6_M00193 TRANSFAC + 156586421 156586438 0.0E+00 AGTTGGCAGGAAGCCAAT 18 V_NANOG_02_M01247 TRANSFAC - 156586173 156586192 5.0E-06 ACAGAATGAGAAAGGAACAG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.