Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RIT2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6014 Ras-like without CAAX 2 chr18 - 40695157 - 40700657 40695657 Transcription Factor Binding Sites   Download all TFBS in the RIT2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 40695671 40695680 6.0E-06 CCAATAAAAA 10 SOX21_HMG_DBD_dimeric_15_1 SELEX - 40695655 40695669 4.0E-06 AGCAATTGAAGTGGT 15 SOX4_HMG_DBD_dimeric_16_1 SELEX - 40695655 40695670 5.0E-06 AAGCAATTGAAGTGGT 16 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 40695671 40695680 9.0E-06 CCAATAAAAA 10 SOX8_HMG_full_dimeric_15_1 SELEX - 40695655 40695669 2.0E-06 AGCAATTGAAGTGGT 15 SOX8_HMG_full_dimeric_17_1 SELEX - 40695654 40695670 3.0E-06 AAGCAATTGAAGTGGTT 17 Sox17_HMG_DBD_dimeric_15_1 SELEX - 40695655 40695669 1.0E-05 AGCAATTGAAGTGGT 15 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 40695671 40695680 0.0E+00 CCAATAAAAA 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 40695670 40695680 1.0E-05 TCCAATAAAAA 11 znf143_MA0088.1 JASPAR + 40695692 40695711 9.0E-06 CATCCCCCACCCTTCCTTCC 20 RFX3_RFX_DBD_dimeric_15_1 SELEX - 40695643 40695657 5.0E-06 GGTTGCTATGAGACC 15 SOX18_HMG_full_dimeric_15_1 SELEX - 40695655 40695669 7.0E-06 AGCAATTGAAGTGGT 15 SOX7_HMG_full_dimeric_17_1 SELEX - 40695654 40695670 9.0E-06 AAGCAATTGAAGTGGTT 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 40695671 40695680 0.0E+00 CCAATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 40695671 40695679 6.0E-06 CCAATAAAA 9 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 40695671 40695680 0.0E+00 CCAATAAAAA 10 CPEB1_RRM_full_monomeric_8_1 SELEX + 40695673 40695680 4.0E-06 AATAAAAA 8 Sox3_HMG_DBD_dimeric_17_1 SELEX - 40695654 40695670 5.0E-06 AAGCAATTGAAGTGGTT 17 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 40695671 40695680 0.0E+00 CCAATAAAAA 10 SOX9_HMG_full_dimeric_17_1 SELEX - 40695654 40695670 3.0E-06 AAGCAATTGAAGTGGTT 17 V_RFX4_03_M02789 TRANSFAC + 40695645 40695659 4.0E-06 TCTCATAGCAACCAC 15 V_HOXD13_01_M01404 TRANSFAC + 40695668 40695683 0.0E+00 CTTCCAATAAAAATCT 16 V_HOXB13_01_M01467 TRANSFAC + 40695668 40695683 0.0E+00 CTTCCAATAAAAATCT 16 V_RFXDC2_03_M02790 TRANSFAC + 40695645 40695659 3.0E-06 TCTCATAGCAACCAC 15 V_STAF_02_M00264 TRANSFAC + 40695693 40695713 7.0E-06 ATCCCCCACCCTTCCTTCCGA 21 V_HAND1E47_01_M00222 TRANSFAC + 40695674 40695689 4.0E-06 ATAAAAATCTGGCTTT 16 V_RFX3_04_M02788 TRANSFAC + 40695641 40695663 1.0E-06 CGGGTCTCATAGCAACCACTTCA 23 V_HOXD10_01_M01375 TRANSFAC + 40695668 40695684 6.0E-06 CTTCCAATAAAAATCTG 17 V_STAT1_05_M01260 TRANSFAC - 40695659 40695680 9.0E-06 TTTTTATTGGAAGCAATTGAAG 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.