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RHO Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6010 rhodopsin chr3 + 129242481 - 129247981 129247481 Transcription Factor Binding Sites   Download all TFBS in the RHO promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_16_1 SELEX - 129249180 129249195 0.0E+00 AGCAATGTGCAATGTT 16 FOXA1_MA0148.1 JASPAR - 129249484 129249494 8.0E-06 TATTTGCTTAG 11 SOX9_HMG_full_dimeric_16_1 SELEX - 129249180 129249195 0.0E+00 AGCAATGTGCAATGTT 16 FOXL1_forkhead_full_dimeric_13_1 SELEX + 129245226 129245238 8.0E-06 ATTCAACAAATAT 13 SOX8_HMG_DBD_dimeric_16_1 SELEX - 129249180 129249195 0.0E+00 AGCAATGTGCAATGTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 129249180 129249195 5.0E-06 AGCAATGTGCAATGTT 16 TBX19_TBX_DBD_dimeric_20_1 SELEX + 129244465 129244484 9.0E-06 ATTTATACCATGGTGTGAAT 20 EWSR1-FLI1_MA0149.1 JASPAR + 129244319 129244336 5.0E-06 GAGGGGAAGGAAGCAGGA 18 EWSR1-FLI1_MA0149.1 JASPAR + 129249252 129249269 4.0E-06 GAGAGGGAGGAAGGACTG 18 Tcfcp2l1_MA0145.1 JASPAR + 129249430 129249443 0.0E+00 CCAGTTCAATCCTG 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 129245421 129245431 1.0E-05 ACAAATAAAAA 11 SP1_MA0079.2 JASPAR + 129249560 129249569 9.0E-06 CCCCTCCTCC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 129244425 129244438 1.0E-05 ATGGAAAGGCCCTA 14 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 129245421 129245431 7.0E-06 ACAAATAAAAA 11 SOX7_HMG_full_dimeric_16_1 SELEX + 129249180 129249195 4.0E-06 AACATTGCACATTGCT 16 SOX7_HMG_full_dimeric_16_1 SELEX - 129249180 129249195 3.0E-06 AGCAATGTGCAATGTT 16 MZF1_5-13_MA0057.1 JASPAR - 129249557 129249566 4.0E-06 GGAGGGGGAA 10 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 129249400 129249414 1.0E-05 CACACACACACAAAA 15 POU1F1_POU_DBD_monomeric_17_1 SELEX - 129245229 129245245 7.0E-06 CTCCTGAATATTTGTTG 17 Pou5f1_MA0142.1 JASPAR + 129249336 129249350 8.0E-06 CATTCTTCTGCTAAA 15 SOX21_HMG_DBD_dimeric_16_1 SELEX - 129249180 129249195 1.0E-06 AGCAATGTGCAATGTT 16 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 129245422 129245431 9.0E-06 CAAATAAAAA 10 CPEB1_RRM_full_monomeric_8_1 SELEX + 129245424 129245431 4.0E-06 AATAAAAA 8 Sox2_MA0143.1 JASPAR - 129245068 129245082 4.0E-06 TCTTTATTCTGTAAA 15 Sox2_MA0143.1 JASPAR + 129249335 129249349 4.0E-06 GCATTCTTCTGCTAA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 129245419 129245431 3.0E-06 ACACAAATAAAAA 13 RREB1_MA0073.1 JASPAR + 129249368 129249387 1.0E-05 ACACACACAACACACACACA 20 RREB1_MA0073.1 JASPAR + 129249370 129249389 0.0E+00 ACACACAACACACACACACA 20 RREB1_MA0073.1 JASPAR + 129249372 129249391 0.0E+00 ACACAACACACACACACACA 20 V_MEQ_01_M02049 TRANSFAC + 129249349 129249357 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC + 129249376 129249384 7.0E-06 AACACACAC 9 V_MTF1_01_M01242 TRANSFAC + 129249172 129249191 3.0E-06 CTGGGCAAAACATTGCACAT 20 V_FOXP1_01_M00987 TRANSFAC - 129249348 129249367 5.0E-06 GTGTGTGTGTGTGTGTGTTT 20 V_FOXP1_01_M00987 TRANSFAC - 129249358 129249377 1.0E-06 TTGTGTGTGTGTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 129249393 129249412 1.0E-06 TTGTGTGTGTGTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 129249395 129249414 4.0E-06 TTTTGTGTGTGTGTGTGTGT 20 V_FREAC7_01_M00293 TRANSFAC + 129245416 129245431 1.0E-06 AAAACACAAATAAAAA 16 V_TCFE2A_04_M02927 TRANSFAC + 129249131 129249147 3.0E-06 CAGGACAGATGTCTGAA 17 V_ATF5_01_M01295 TRANSFAC - 129249247 129249257 7.0E-06 CCTCTCCCTTC 11 V_ZFP410_04_M02936 TRANSFAC + 129249313 129249329 9.0E-06 GAACTCTGCCCCACATT 17 V_HMGIY_Q3_M01010 TRANSFAC + 129249508 129249522 3.0E-06 CCTGGAATTTCTTTG 15 V_EVI1_04_M00081 TRANSFAC - 129245044 129245058 7.0E-06 AGAAAAAAAAAGTTT 15 V_BCL6_01_M01183 TRANSFAC - 129245416 129245431 5.0E-06 TTTTTATTTGTGTTTT 16 V_SPIB_02_M02041 TRANSFAC + 129245178 129245187 2.0E-06 AGGGGAAGTA 10 V_POU5F1_02_M02245 TRANSFAC + 129249336 129249350 8.0E-06 CATTCTTCTGCTAAA 15 V_HOXA13_02_M01297 TRANSFAC + 129245423 129245431 4.0E-06 AAATAAAAA 9 V_HNF3_Q6_01_M01012 TRANSFAC - 129245415 129245432 5.0E-06 CTTTTTATTTGTGTTTTG 18 V_SP1_03_M02281 TRANSFAC + 129249560 129249569 9.0E-06 CCCCTCCTCC 10 V_PU1_Q4_M01172 TRANSFAC + 129249152 129249170 5.0E-06 ATCATTTCCTTCTTCTTCC 19 V_ZFP691_03_M02833 TRANSFAC - 129245076 129245092 4.0E-06 GTGACAGTGCTCTTTAT 17 V_TCFAP2E_04_M02926 TRANSFAC - 129245048 129245061 9.0E-06 CGAAGAAAAAAAAA 14 V_SPIC_01_M02042 TRANSFAC + 129245178 129245187 5.0E-06 AGGGGAAGTA 10 V_SPI1_03_M02078 TRANSFAC + 129245178 129245187 6.0E-06 AGGGGAAGTA 10 V_ZFP105_03_M02827 TRANSFAC - 129245045 129245059 9.0E-06 AAGAAAAAAAAAGTT 15 V_ZFP105_03_M02827 TRANSFAC + 129245420 129245434 3.0E-06 CACAAATAAAAAGCT 15 V_MAZ_Q6_01_M02023 TRANSFAC - 129249559 129249572 6.0E-06 CTGGGAGGAGGGGG 14 V_HNF3_Q6_M00791 TRANSFAC + 129245227 129245239 8.0E-06 TTCAACAAATATT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 129249484 129249494 4.0E-06 TATTTGCTTAG 11 V_HBP1_03_M02762 TRANSFAC - 129245219 129245234 2.0E-06 TTGTTGAATGAACGAG 16 V_SP1SP3_Q4_M01219 TRANSFAC + 129249559 129249569 1.0E-05 CCCCCTCCTCC 11 V_SMAD4_Q6_M00733 TRANSFAC - 129249137 129249151 4.0E-06 GGAATTCAGACATCT 15 V_OCT4_02_M01124 TRANSFAC + 129249337 129249351 1.0E-05 ATTCTTCTGCTAAAC 15 V_MZF1_02_M00084 TRANSFAC - 129245111 129245123 1.0E-06 TGGTGATGGGGAA 13 V_MZF1_02_M00084 TRANSFAC - 129249557 129249569 2.0E-06 GGAGGAGGGGGAA 13 V_ISGF4G_04_M02875 TRANSFAC + 129245414 129245427 1.0E-05 ACAAAACACAAATA 14 V_HOXD9_Q2_M01834 TRANSFAC + 129245421 129245430 8.0E-06 ACAAATAAAA 10 V_TFIII_Q6_M00706 TRANSFAC + 129249253 129249261 6.0E-06 AGAGGGAGG 9 V_ZFP187_04_M02934 TRANSFAC + 129245030 129245045 5.0E-06 GAGACCTTGTCTCAAA 16 V_FAC1_01_M00456 TRANSFAC + 129245412 129245425 0.0E+00 GCACAAAACACAAA 14 V_FAC1_01_M00456 TRANSFAC + 129249370 129249383 0.0E+00 ACACACAACACACA 14 V_AP1FJ_Q2_M00172 TRANSFAC + 129244344 129244354 3.0E-06 GGTGACTCAAA 11 V_FOXJ3_06_M02855 TRANSFAC + 129249172 129249188 6.0E-06 CTGGGCAAAACATTGCA 17 V_FPM315_01_M01587 TRANSFAC - 129249561 129249572 9.0E-06 CTGGGAGGAGGG 12 V_SPIC_02_M02077 TRANSFAC + 129245178 129245187 9.0E-06 AGGGGAAGTA 10 V_FOX_Q2_M00809 TRANSFAC - 129245228 129245240 4.0E-06 GAATATTTGTTGA 13 V_P53_01_M00034 TRANSFAC - 129249208 129249227 9.0E-06 GGACATGTGGGGGCCTCTCC 20 V_NFAT2_02_M01749 TRANSFAC + 129249505 129249515 1.0E-05 TTCCCTGGAAT 11 V_SOX2_01_M02246 TRANSFAC - 129245068 129245082 4.0E-06 TCTTTATTCTGTAAA 15 V_SOX2_01_M02246 TRANSFAC + 129249335 129249349 4.0E-06 GCATTCTTCTGCTAA 15 V_SRF_06_M02916 TRANSFAC - 129245044 129245060 0.0E+00 GAAGAAAAAAAAAGTTT 17 V_SRF_06_M02916 TRANSFAC - 129245045 129245061 0.0E+00 CGAAGAAAAAAAAAGTT 17 V_HFH3_01_M00289 TRANSFAC - 129245228 129245240 7.0E-06 GAATATTTGTTGA 13 V_HFH3_01_M00289 TRANSFAC - 129245418 129245430 8.0E-06 TTTTATTTGTGTT 13 V_HFH3_01_M00289 TRANSFAC - 129249485 129249497 3.0E-06 AGTTATTTGCTTA 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 129244319 129244336 5.0E-06 GAGGGGAAGGAAGCAGGA 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 129249252 129249269 4.0E-06 GAGAGGGAGGAAGGACTG 18 V_FOXJ2_01_M00422 TRANSFAC + 129245225 129245242 2.0E-06 CATTCAACAAATATTCAG 18 V_FOXJ2_01_M00422 TRANSFAC + 129245415 129245432 7.0E-06 CAAAACACAAATAAAAAG 18 V_HNF3B_Q6_M02014 TRANSFAC - 129249487 129249495 1.0E-05 TTATTTGCT 9 V_UF1H3BETA_Q6_M01068 TRANSFAC - 129244269 129244282 4.0E-06 TGTGGGGTAGGGGC 14 V_TCF11MAFG_01_M00284 TRANSFAC + 129245126 129245147 1.0E-06 GCTCCATGAGGTTGCAATTGTG 22 V_SPI1_02_M02043 TRANSFAC + 129245178 129245187 3.0E-06 AGGGGAAGTA 10 V_NANOG_02_M01247 TRANSFAC - 129249330 129249349 5.0E-06 TTAGCAGAAGAATGCATCCT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.