Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RHD Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6007 Rh blood group, D antigen chr1 + 25593980 - 25599480 25598980 Transcription Factor Binding Sites   Download all TFBS in the RHD promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CENPB_CENPB_full_monomeric_15_1 SELEX - 25594142 25594156 1.0E-05 CCCGCGTGGTGCAAA 15 POU2F1_POU_DBD_dimeric_14_1 SELEX + 25594530 25594543 6.0E-06 ATAACATATGCAAA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 25595021 25595037 8.0E-06 ATACACAAGTAAAAATA 17 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 25594536 25594544 8.0E-06 TATGCAAAA 9 POU2F3_POU_DBD_monomeric_9_1 SELEX + 25594536 25594544 8.0E-06 TATGCAAAA 9 POU2F2_POU_DBD_monomeric_11_1 SELEX + 25594535 25594545 2.0E-06 ATATGCAAAAT 11 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 25594536 25594544 7.0E-06 TATGCAAAA 9 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 25594530 25594543 9.0E-06 ATAACATATGCAAA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 25594531 25594542 9.0E-06 TAACATATGCAA 12 NFIX_NFI_full_monomeric_9_2 SELEX - 25594559 25594567 8.0E-06 AATGCCAAT 9 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX + 25594243 25594257 9.0E-06 GGGTACGAAGGCCAA 15 POU1F1_POU_DBD_monomeric_17_1 SELEX - 25594529 25594545 3.0E-06 ATTTTGCATATGTTATT 17 POU3F1_POU_DBD_monomeric_12_1 SELEX + 25594535 25594546 9.0E-06 ATATGCAAAATG 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 25594531 25594542 8.0E-06 TAACATATGCAA 12 POU2F1_POU_DBD_monomeric_12_1 SELEX + 25594534 25594545 4.0E-06 CATATGCAAAAT 12 TEAD1_TEA_full_dimeric_17_1 SELEX + 25594563 25594579 3.0E-06 GCATTCCAGAAATGGTA 17 SPDEF_ETS_full_monomeric_11_1 SELEX - 25594501 25594511 3.0E-06 ACCCGGATGCA 11 POU3F2_POU_DBD_monomeric_12_1 SELEX + 25594535 25594546 9.0E-06 ATATGCAAAATG 12 V_FOXP1_01_M00987 TRANSFAC - 25595005 25595024 1.0E-06 GTATTTAGGTTTTTTTTTTA 20 V_FOXP1_01_M00987 TRANSFAC - 25595009 25595028 2.0E-06 TTGTGTATTTAGGTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 25595013 25595032 2.0E-06 TTACTTGTGTATTTAGGTTT 20 V_FOXP1_01_M00987 TRANSFAC - 25595019 25595038 1.0E-06 ATATTTTTACTTGTGTATTT 20 V_GAF_Q6_M01209 TRANSFAC + 25594688 25594698 7.0E-06 CAGATTCTCAT 11 V_POU3F3_01_M03090 TRANSFAC - 25594531 25594547 4.0E-06 TCATTTTGCATATGTTA 17 V_POU3F3_01_M03090 TRANSFAC + 25594532 25594548 1.0E-06 AACATATGCAAAATGAT 17 V_BCL6_01_M01183 TRANSFAC - 25595008 25595023 0.0E+00 TATTTAGGTTTTTTTT 16 V_OCTAMER_01_M01324 TRANSFAC - 25594531 25594547 4.0E-06 TCATTTTGCATATGTTA 17 V_OCTAMER_01_M01324 TRANSFAC + 25594532 25594548 1.0E-06 AACATATGCAAAATGAT 17 V_OCT1_01_M00135 TRANSFAC + 25594531 25594549 3.0E-06 TAACATATGCAAAATGATT 19 V_GATA_C_M00203 TRANSFAC + 25598924 25598934 3.0E-06 AGATAAGGCCT 11 V_TCFAP2E_04_M02926 TRANSFAC + 25595024 25595037 1.0E-05 CACAAGTAAAAATA 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 25598913 25598930 3.0E-06 CTTGCAGCCTGAGATAAG 18 V_FOXA2_02_M02853 TRANSFAC + 25594526 25594540 3.0E-06 TGAAATAACATATGC 15 V_SPDEF_03_M02811 TRANSFAC + 25594500 25594515 4.0E-06 CTGCATCCGGGTGTCT 16 V_MRF2_01_M00454 TRANSFAC + 25595014 25595027 8.0E-06 AACCTAAATACACA 14 V_OCT1_04_M00138 TRANSFAC + 25594529 25594551 2.0E-06 AATAACATATGCAAAATGATTGG 23 Tal1_Gata1_MA0140.1 JASPAR + 25598913 25598930 3.0E-06 CTTGCAGCCTGAGATAAG 18 V_PBX1_05_M01967 TRANSFAC + 25594555 25594568 7.0E-06 CGTGATTGGCATTC 14 V_CDC5_01_M00478 TRANSFAC + 25594527 25594538 1.0E-05 GAAATAACATAT 12 V_OCT1_B_M00342 TRANSFAC + 25594536 25594545 7.0E-06 TATGCAAAAT 10 V_POU5F1_01_M01307 TRANSFAC + 25594536 25594545 4.0E-06 TATGCAAAAT 10 V_NRF1_Q6_M00652 TRANSFAC + 25594467 25594476 4.0E-06 CGCATGCGCG 10 V_PBX1_02_M00124 TRANSFAC + 25594228 25594242 6.0E-06 CACCTCAATCAAGAC 15 V_FOXJ2_01_M00422 TRANSFAC + 25594589 25594606 3.0E-06 CAGCCAACAAATATTTAT 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.