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UPF1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5976 UPF1 regulator of nonsense transcripts homolog (yeast) chr19 + 18937743 - 18943243 18942743 Transcription Factor Binding Sites   Download all TFBS in the UPF1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 18942194 18942206 4.0E-06 AAAAATATAAAAA 13 EN2_homeodomain_full_monomeric_10_1 SELEX + 18942579 18942588 1.0E-06 CCCAATTAGC 10 SRY_HMG_DBD_dimeric_13_2 SELEX + 18944072 18944084 8.0E-06 TTAAGATCATTCA 13 TEF_bZIP_DBD_dimeric_12_1 SELEX + 18944138 18944149 2.0E-06 TGTTACATAACT 12 TEF_bZIP_DBD_dimeric_12_1 SELEX - 18944138 18944149 5.0E-06 AGTTATGTAACA 12 IRF8_IRF_full_dimeric_14_1 SELEX + 18942506 18942519 6.0E-06 ATTAAACCGAAACA 14 HLF_bZIP_full_dimeric_12_1 SELEX + 18944138 18944149 2.0E-06 TGTTACATAACT 12 HLF_bZIP_full_dimeric_12_1 SELEX - 18944138 18944149 5.0E-06 AGTTATGTAACA 12 POU1F1_POU_DBD_monomeric_14_1 SELEX - 18942190 18942203 6.0E-06 AATATAAAAATTAG 14 NFIL3_MA0025.1 JASPAR - 18944137 18944147 3.0E-06 TTATGTAACAG 11 GLI2_C2H2_DBD_monomeric_14_1 SELEX + 18942473 18942486 7.0E-06 GACCACCTATGTAG 14 DBP_bZIP_full_dimeric_12_1 SELEX + 18944138 18944149 4.0E-06 TGTTACATAACT 12 DBP_bZIP_full_dimeric_12_1 SELEX - 18944138 18944149 2.0E-06 AGTTATGTAACA 12 Klf4_MA0039.2 JASPAR - 18945408 18945417 5.0E-06 TGGGTGGGGC 10 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 18944069 18944084 9.0E-06 TGAATGATCTTAATAG 16 GBX2_homeodomain_full_monomeric_10_1 SELEX + 18942579 18942588 1.0E-05 CCCAATTAGC 10 EN1_homeodomain_DBD_monomeric_10_1 SELEX + 18942579 18942588 8.0E-06 CCCAATTAGC 10 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 18945413 18945427 8.0E-06 AGGTAACAGGTGGGT 15 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 18944138 18944149 2.0E-06 TGTTACATAACT 12 Foxd3_MA0041.1 JASPAR + 18944099 18944110 7.0E-06 TTTTGTTTTTTC 12 MYBL1_MYB_DBD_dimeric_12_1 SELEX - 18945139 18945150 2.0E-06 ACAGTTAAAAGG 12 IRF9_IRF_full_trimeric_15_1 SELEX + 18942505 18942519 2.0E-06 AATTAAACCGAAACA 15 HLF_MA0043.1 JASPAR + 18944138 18944149 6.0E-06 TGTTACATAACT 12 IRF4_IRF_full_dimeric_15_1 SELEX + 18942506 18942520 1.0E-05 ATTAAACCGAAACAC 15 REST_MA0138.2 JASPAR - 18943411 18943431 9.0E-06 TGCAGGACCTGGGGCAGGTAA 21 NRF1_NRF_full_dimeric_12_1 SELEX - 18942650 18942661 5.0E-06 CGCGCACGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX + 18942734 18942745 5.0E-06 CGCGCACGCGCA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 18942194 18942206 6.0E-06 AAAAATATAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 18942194 18942206 2.0E-06 AAAAATATAAAAA 13 Zfx_MA0146.1 JASPAR + 18942944 18942957 1.0E-06 GCGGCCTAGGCCTC 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 18944095 18944108 5.0E-06 AAAAACAAAATACA 14 V_FOXP1_01_M00987 TRANSFAC + 18944090 18944109 8.0E-06 CAGGTTGTATTTTGTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 18944097 18944116 3.0E-06 TATTTTGTTTTTTCTTGCAT 20 V_FOXP1_01_M00987 TRANSFAC + 18945429 18945448 3.0E-06 TAATTTGGATTTGTTTGTGG 20 V_DBX1_01_M01483 TRANSFAC - 18942191 18942207 5.0E-06 AAAAAATATAAAAATTA 17 V_FXR_Q3_M00631 TRANSFAC + 18943791 18943804 5.0E-06 GAGCTTGAGTGACT 14 V_AREB6_03_M00414 TRANSFAC - 18942532 18942543 7.0E-06 CTGCACCTGTGG 12 V_ZFX_01_M01593 TRANSFAC - 18942932 18942947 1.0E-05 CCGCAGGCCTCGGGTC 16 V_ZFX_01_M01593 TRANSFAC - 18942939 18942954 5.0E-06 GCCTAGGCCGCAGGCC 16 V_ZFX_01_M01593 TRANSFAC + 18942947 18942962 1.0E-06 GCCTAGGCCTCAGCGC 16 V_EVI1_04_M00081 TRANSFAC - 18944097 18944111 1.0E-06 AGAAAAAACAAAATA 15 V_FOXD3_01_M00130 TRANSFAC + 18944099 18944110 6.0E-06 TTTTGTTTTTTC 12 V_BCL6_01_M01183 TRANSFAC + 18942191 18942206 3.0E-06 TAATTTTTATATTTTT 16 V_BCL6_01_M01183 TRANSFAC + 18942192 18942207 7.0E-06 AATTTTTATATTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 18944097 18944112 6.0E-06 TATTTTGTTTTTTCTT 16 V_HOXA3_01_M00395 TRANSFAC + 18942189 18942197 7.0E-06 CCTAATTTT 9 V_GATA3_03_M00351 TRANSFAC - 18944073 18944082 4.0E-06 AATGATCTTA 10 V_SRY_02_M00160 TRANSFAC - 18944097 18944108 8.0E-06 AAAAACAAAATA 12 V_GLI1_Q2_M01042 TRANSFAC + 18942543 18942552 6.0E-06 GACCACCAAG 10 V_GBX2_01_M01382 TRANSFAC + 18942576 18942592 8.0E-06 GTCCCCAATTAGCAGTT 17 V_FOXO3A_Q1_M01137 TRANSFAC - 18944098 18944109 3.0E-06 AAAAAACAAAAT 12 V_P53_DECAMER_Q2_M00761 TRANSFAC - 18943523 18943532 9.0E-06 AGGCAAGTCT 10 V_HNF3_Q6_01_M01012 TRANSFAC + 18944097 18944114 7.0E-06 TATTTTGTTTTTTCTTGC 18 V_AP2_Q6_M00189 TRANSFAC + 18943155 18943166 2.0E-06 CGCCCCCCGGCG 12 V_GKLF_02_M01588 TRANSFAC + 18945408 18945419 3.0E-06 GCCCCACCCACC 12 V_NERF_Q2_M00531 TRANSFAC + 18944080 18944097 8.0E-06 ATTCAGGAAGCAGGTTGT 18 V_NKX24_01_M01350 TRANSFAC + 18945383 18945398 9.0E-06 TGTGCTACTTGTAATT 16 V_E2A_Q2_M00804 TRANSFAC + 18945415 18945428 7.0E-06 CCACCTGTTACCTG 14 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 18945409 18945424 3.0E-06 TAACAGGTGGGTGGGG 16 V_SOX21_03_M02803 TRANSFAC + 18942192 18942207 6.0E-06 AATTTTTATATTTTTT 16 V_SOX21_03_M02803 TRANSFAC - 18942192 18942207 6.0E-06 AAAAAATATAAAAATT 16 V_TCFAP2E_04_M02926 TRANSFAC - 18944102 18944115 9.0E-06 TGCAAGAAAAAACA 14 V_P53_02_M00272 TRANSFAC + 18943523 18943532 9.0E-06 AGACTTGCCT 10 V_LHX8_01_M01440 TRANSFAC + 18942576 18942592 7.0E-06 GTCCCCAATTAGCAGTT 17 V_RPC155_01_M01798 TRANSFAC - 18942241 18942256 0.0E+00 TCAGGAGTTCGAGACC 16 V_ELF4_04_M02850 TRANSFAC - 18942196 18942212 1.0E-05 TCTACAAAAAATATAAA 17 V_GC_01_M00255 TRANSFAC - 18942637 18942650 1.0E-06 AGGGGGTGGGGCTT 14 V_FOXA2_02_M02853 TRANSFAC - 18944097 18944111 8.0E-06 AGAAAAAACAAAATA 15 V_DBP_Q6_01_M01872 TRANSFAC - 18944140 18944147 5.0E-06 TTATGTAA 8 V_ZFP105_03_M02827 TRANSFAC - 18942196 18942210 2.0E-06 TACAAAAAATATAAA 15 V_ZFP105_03_M02827 TRANSFAC - 18944095 18944109 5.0E-06 AAAAAACAAAATACA 15 V_ZFP105_03_M02827 TRANSFAC - 18944098 18944112 2.0E-06 AAGAAAAAACAAAAT 15 V_E4BP4_01_M00045 TRANSFAC - 18944138 18944149 0.0E+00 AGTTATGTAACA 12 V_ARID5A_03_M02736 TRANSFAC + 18942190 18942203 9.0E-06 CTAATTTTTATATT 14 V_ARID3A_02_M02839 TRANSFAC - 18942192 18942206 1.0E-06 AAAAATATAAAAATT 15 V_ERBETA_Q5_M01875 TRANSFAC + 18945391 18945405 1.0E-05 TTGTAATTGACCCAG 15 V_TCF7_03_M02817 TRANSFAC - 18945135 18945151 8.0E-06 TACAGTTAAAAGGATTC 17 V_TBP_06_M02814 TRANSFAC + 18942190 18942205 2.0E-06 CTAATTTTTATATTTT 16 V_TBP_06_M02814 TRANSFAC + 18942192 18942207 3.0E-06 AATTTTTATATTTTTT 16 V_TBP_06_M02814 TRANSFAC - 18942192 18942207 2.0E-06 AAAAAATATAAAAATT 16 V_TBP_06_M02814 TRANSFAC - 18942194 18942209 8.0E-06 ACAAAAAATATAAAAA 16 V_LMO2COM_01_M00277 TRANSFAC + 18942532 18942543 3.0E-06 CCACAGGTGCAG 12 V_FOXO1_Q5_M01216 TRANSFAC - 18944100 18944108 1.0E-06 AAAAACAAA 9 V_NEUROD_02_M01288 TRANSFAC + 18942676 18942687 7.0E-06 TTCCTGCTGGGC 12 V_CIZ_01_M00734 TRANSFAC - 18942200 18942208 6.0E-06 CAAAAAATA 9 V_MTF1_06_M02882 TRANSFAC - 18942191 18942204 2.0E-06 AAATATAAAAATTA 14 V_GLI2_01_M01703 TRANSFAC + 18942473 18942483 7.0E-06 GACCACCTATG 11 V_FOXL1_02_M02857 TRANSFAC - 18944092 18944107 4.0E-06 AAAACAAAATACAACC 16 V_FOXL1_02_M02857 TRANSFAC - 18944097 18944112 5.0E-06 AAGAAAAAACAAAATA 16 V_OCT1_Q6_M00195 TRANSFAC - 18942190 18942204 4.0E-06 AAATATAAAAATTAG 15 V_E2F3_03_M02743 TRANSFAC + 18942702 18942716 8.0E-06 AAGAGCGCGCGCGCT 15 V_DMRT7_01_M01151 TRANSFAC + 18942194 18942207 7.0E-06 TTTTTATATTTTTT 14 V_ZFP206_01_M01742 TRANSFAC + 18942650 18942660 7.0E-06 TGCGCGTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 18942651 18942661 9.0E-06 CGCGCACGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 18942734 18942744 9.0E-06 CGCGCACGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 18942735 18942745 7.0E-06 TGCGCGTGCGC 11 V_BDP1_01_M01796 TRANSFAC + 18942241 18942252 2.0E-06 GGTCTCGAACTC 12 V_TBX15_02_M01264 TRANSFAC - 18944140 18944157 3.0E-06 AGTTGTGAAGTTATGTAA 18 V_REST_02_M02256 TRANSFAC - 18943411 18943431 9.0E-06 TGCAGGACCTGGGGCAGGTAA 21 V_ZFP281_01_M01597 TRANSFAC - 18942640 18942650 5.0E-06 AGGGGGTGGGG 11 V_SRF_06_M02916 TRANSFAC - 18944094 18944110 8.0E-06 GAAAAAACAAAATACAA 17 V_SRF_06_M02916 TRANSFAC - 18944097 18944113 5.0E-06 CAAGAAAAAACAAAATA 17 V_SRF_06_M02916 TRANSFAC - 18944098 18944114 3.0E-06 GCAAGAAAAAACAAAAT 17 V_HLF_01_M00260 TRANSFAC + 18944139 18944148 7.0E-06 GTTACATAAC 10 V_FOXO1_01_M00473 TRANSFAC - 18944100 18944109 2.0E-06 AAAAAACAAA 10 V_GLI_Q2_M01037 TRANSFAC - 18942542 18942553 6.0E-06 ACTTGGTGGTCT 12 V_FOXO4_01_M00472 TRANSFAC - 18944098 18944108 1.0E-05 AAAAACAAAAT 11 V_SP1_Q4_01_M00932 TRANSFAC - 18942638 18942650 5.0E-06 AGGGGGTGGGGCT 13 V_NKX21_01_M01312 TRANSFAC + 18945383 18945398 9.0E-06 TGTGCTACTTGTAATT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.