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PRPH2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5961 peripherin 2 (retinal degeneration, slow) chr6 - 42689858 - 42695358 42690358 Transcription Factor Binding Sites   Download all TFBS in the PRPH2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 42694505 42694523 2.0E-06 GGGCCACCAGGGGGCATCC 19 Foxa2_MA0047.2 JASPAR - 42688763 42688774 0.0E+00 TGTTTACTTAGC 12 SPIC_ETS_full_monomeric_14_1 SELEX + 42694347 42694360 2.0E-06 AAGAAGAGGAAGAA 14 FOXA1_MA0148.1 JASPAR - 42688764 42688774 0.0E+00 TGTTTACTTAG 11 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 42694390 42694401 2.0E-06 TTTAAAAATAGC 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 42688765 42688776 1.0E-05 TAAGTAAACACC 12 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 42688765 42688775 8.0E-06 TAAGTAAACAC 11 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 42694437 42694453 2.0E-06 AAGGTCATTTGAGGAGA 17 SOX8_HMG_full_dimeric_17_1 SELEX + 42694783 42694799 3.0E-06 CATCTATTATAGAGATA 17 PDX1_homeodomain_DBD_monomeric_8_1 SELEX + 42694709 42694716 5.0E-06 GTAATTAA 8 Esrrb_MA0141.1 JASPAR - 42694447 42694458 1.0E-06 ACCTCAAGGTCA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 42694390 42694401 1.0E-06 TTTAAAAATAGC 12 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 6.0E-06 AGTAATTAAT 10 SPIB_ETS_DBD_monomeric_14_1 SELEX + 42694347 42694360 1.0E-05 AAGAAGAGGAAGAA 14 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 2.0E-06 AGTAATTAAT 10 MEF2B_MADS_full_dimeric_12_1 SELEX + 42694390 42694401 4.0E-06 TTTAAAAATAGC 12 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX + 42694709 42694716 5.0E-06 GTAATTAA 8 MEF2A_MA0052.1 JASPAR - 42694391 42694400 3.0E-06 CTATTTTTAA 10 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 3.0E-06 AGTAATTAAT 10 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 2.0E-06 AGTAATTAAT 10 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 1.0E-06 AGTAATTAAT 10 PHOX2B_homeodomain_full_dimeric_11_1 SELEX + 42694412 42694422 8.0E-06 TAACCCGATTA 11 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 42694446 42694455 1.0E-06 TCAAGGTCAT 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 42694709 42694716 9.0E-06 TTAATTAC 8 CTCF_C2H2_full_monomeric_17_1 SELEX + 42694506 42694522 7.0E-06 GATGCCCCCTGGTGGCC 17 Lhx3_MA0135.1 JASPAR + 42694710 42694722 6.0E-06 TAATTAATCTGTC 13 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 42694437 42694453 9.0E-06 AAGGTCATTTGAGGAGA 17 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 42688785 42688794 4.0E-06 ACTCATTAAA 10 GSX2_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 8.0E-06 AGTAATTAAT 10 Foxd3_MA0041.1 JASPAR - 42694381 42694392 8.0E-06 AAATTTTTGTTT 12 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 0.0E+00 AGTAATTAAT 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 42694446 42694456 1.0E-06 CTCAAGGTCAT 11 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 2.0E-06 AGTAATTAAT 10 FEV_MA0156.1 JASPAR + 42694264 42694271 1.0E-05 CAGGAAAT 8 VAX2_homeodomain_DBD_monomeric_8_1 SELEX - 42694709 42694716 5.0E-06 TTAATTAC 8 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 42694445 42694455 0.0E+00 TCAAGGTCATT 11 MEOX1_homeodomain_full_monomeric_10_1 SELEX + 42694708 42694717 7.0E-06 AGTAATTAAT 10 GSX1_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 8.0E-06 AGTAATTAAT 10 MNX1_homeodomain_DBD_monomeric_10_1 SELEX + 42694708 42694717 3.0E-06 AGTAATTAAT 10 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 42688765 42688775 1.0E-05 TAAGTAAACAC 11 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 42694709 42694716 9.0E-06 TTAATTAC 8 V_NFAT_Q4_01_M00935 TRANSFAC + 42694545 42694554 7.0E-06 ATGGAAATTT 10 V_FOXP1_01_M00987 TRANSFAC - 42694379 42694398 3.0E-06 ATTTTTAAATTTTTGTTTCT 20 V_FOXP1_01_M00987 TRANSFAC - 42694381 42694400 2.0E-06 CTATTTTTAAATTTTTGTTT 20 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 42694710 42694723 1.0E-06 TGACAGATTAATTA 14 V_MSX3_01_M01341 TRANSFAC + 42694704 42694719 6.0E-06 AAGCAGTAATTAATCT 16 V_DBX1_01_M01483 TRANSFAC + 42694384 42694400 1.0E-06 CAAAAATTTAAAAATAG 17 V_MEQCJUN_02_M02048 TRANSFAC - 42695213 42695223 4.0E-06 GATGTCGTCAT 11 V_YY1_02_M00069 TRANSFAC + 42694748 42694767 7.0E-06 TCCGGACCATGTTGGATGTG 20 V_HMGIY_Q3_M01010 TRANSFAC - 42694383 42694397 3.0E-06 TTTTTAAATTTTTGT 15 V_EVI1_04_M00081 TRANSFAC - 42688844 42688858 7.0E-06 GAATAGAATAGGTAA 15 V_FOXD3_01_M00130 TRANSFAC - 42694381 42694392 6.0E-06 AAATTTTTGTTT 12 V_BCL6_01_M01183 TRANSFAC - 42694385 42694400 4.0E-06 CTATTTTTAAATTTTT 16 V_ERR3_Q2_01_M02094 TRANSFAC - 42694445 42694457 1.0E-06 CCTCAAGGTCATT 13 V_LRH1_Q5_01_M02098 TRANSFAC - 42694447 42694457 9.0E-06 CCTCAAGGTCA 11 V_ETS_B_M00340 TRANSFAC + 42694262 42694275 7.0E-06 TGCAGGAAATAGGA 14 V_GATA3_03_M00351 TRANSFAC + 42694359 42694368 8.0E-06 AAAGATTTAA 10 V_SPDEF_04_M02915 TRANSFAC - 42694267 42694282 1.0E-06 ATCTACATCCTATTTC 16 V_MEF2_02_M00231 TRANSFAC + 42694384 42694405 0.0E+00 CAAAAATTTAAAAATAGCTCTA 22 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 42694710 42694723 1.0E-06 TGACAGATTAATTA 14 V_OTX_Q1_M01117 TRANSFAC - 42694711 42694718 5.0E-06 GATTAATT 8 V_GCNF_Q3_M02009 TRANSFAC - 42694445 42694454 9.0E-06 CAAGGTCATT 10 V_OCT1_01_M00135 TRANSFAC - 42688700 42688718 7.0E-06 TGGCATATGTAAAAGTAAA 19 V_ARNT_01_M00236 TRANSFAC + 42694550 42694565 6.0E-06 AATTTAACGTGCTCGC 16 V_CART1_02_M01362 TRANSFAC + 42694705 42694721 8.0E-06 AGCAGTAATTAATCTGT 17 V_HOXC4_01_M01369 TRANSFAC - 42694704 42694720 7.0E-06 CAGATTAATTACTGCTT 17 V_NKX61_03_M01489 TRANSFAC - 42694705 42694721 1.0E-06 ACAGATTAATTACTGCT 17 V_HOXC6_01_M01406 TRANSFAC - 42694704 42694720 2.0E-06 CAGATTAATTACTGCTT 17 V_VAX2_01_M01327 TRANSFAC - 42694706 42694721 9.0E-06 ACAGATTAATTACTGC 16 V_PU1_Q4_M01172 TRANSFAC - 42694348 42694366 0.0E+00 AAATCTTTCTTCCTCTTCT 19 V_PSX1_01_M01435 TRANSFAC + 42694705 42694721 1.0E-05 AGCAGTAATTAATCTGT 17 V_NFAT2_01_M01748 TRANSFAC + 42694545 42694553 5.0E-06 ATGGAAATT 9 V_MEF2A_Q6_M02024 TRANSFAC - 42694390 42694399 1.0E-06 TATTTTTAAA 10 V_SOX7_03_M02807 TRANSFAC + 42694244 42694265 9.0E-06 ATTGGAAGACAATTGTCCTGCA 22 V_SOX7_03_M02807 TRANSFAC - 42694246 42694267 8.0E-06 CCTGCAGGACAATTGTCTTCCA 22 V_EN1_02_M01365 TRANSFAC - 42694706 42694721 7.0E-06 ACAGATTAATTACTGC 16 V_PR_Q2_M00960 TRANSFAC + 42694603 42694612 9.0E-06 AAAAGAACAG 10 V_TEF_Q6_M00672 TRANSFAC - 42688701 42688712 4.0E-06 ATGTAAAAGTAA 12 V_POLY_C_M00212 TRANSFAC - 42694353 42694370 6.0E-06 CATTAAATCTTTCTTCCT 18 V_NKX61_01_M00424 TRANSFAC + 42688783 42688795 1.0E-05 CATTTAATGAGTA 13 V_HOXA3_02_M01337 TRANSFAC + 42694704 42694717 2.0E-06 AAGCAGTAATTAAT 14 V_RSRFC4_Q2_M00407 TRANSFAC + 42694388 42694404 0.0E+00 AATTTAAAAATAGCTCT 17 V_AMEF2_Q6_M00403 TRANSFAC + 42694387 42694404 6.0E-06 AAATTTAAAAATAGCTCT 18 V_HNF3A_01_M01261 TRANSFAC + 42688766 42688775 3.0E-06 AAGTAAACAC 10 V_EVI1_01_M00078 TRANSFAC + 42694326 42694341 5.0E-06 AGACAAGAGAAAATCA 16 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 42688764 42688774 7.0E-06 TGTTTACTTAG 11 V_HNF1_Q6_01_M01011 TRANSFAC + 42694379 42694399 6.0E-06 AGAAACAAAAATTTAAAAATA 21 V_MEF2_03_M00232 TRANSFAC + 42694384 42694405 1.0E-06 CAAAAATTTAAAAATAGCTCTA 22 V_NKX52_01_M01315 TRANSFAC + 42688778 42688794 2.0E-06 GCAAGCATTTAATGAGT 17 V_NKX52_01_M01315 TRANSFAC + 42693907 42693923 7.0E-06 CAAAGCACTTATTCCAT 17 V_ERR1_Q3_M01841 TRANSFAC + 42694444 42694458 0.0E+00 AAATGACCTTGAGGT 15 V_HMX1_02_M01481 TRANSFAC + 42688778 42688794 3.0E-06 GCAAGCATTTAATGAGT 17 V_MEF2_04_M00233 TRANSFAC + 42694514 42694535 3.0E-06 CTGGTGGCCCTAAATAGAATGG 22 V_SPIB_01_M01204 TRANSFAC + 42694347 42694363 2.0E-06 AAGAAGAGGAAGAAAGA 17 V_DAX1_01_M01248 TRANSFAC - 42694441 42694460 5.0E-06 CAACCTCAAGGTCATTTGAG 20 V_MEF2_Q6_01_M00941 TRANSFAC - 42694391 42694402 0.0E+00 AGCTATTTTTAA 12 V_CDC5_01_M00478 TRANSFAC + 42694362 42694373 2.0E-06 GATTTAATGTAG 12 V_NCX_02_M01420 TRANSFAC + 42694384 42694400 4.0E-06 CAAAAATTTAAAAATAG 17 V_SRF_Q5_02_M01007 TRANSFAC + 42695163 42695181 2.0E-06 CATCGCCATCTATGGCCTG 19 V_TBP_06_M02814 TRANSFAC + 42694384 42694399 4.0E-06 CAAAAATTTAAAAATA 16 V_TBP_06_M02814 TRANSFAC - 42694386 42694401 6.0E-06 GCTATTTTTAAATTTT 16 V_CTCF_02_M01259 TRANSFAC - 42694507 42694526 1.0E-06 TTAGGGCCACCAGGGGGCAT 20 V_CTCF_01_M01200 TRANSFAC - 42694505 42694524 1.0E-06 AGGGCCACCAGGGGGCATCC 20 V_NKX63_01_M01470 TRANSFAC - 42694705 42694721 1.0E-06 ACAGATTAATTACTGCT 17 V_HOXD9_Q2_M01834 TRANSFAC - 42688785 42688794 3.0E-06 ACTCATTAAA 10 V_HOXB4_01_M01424 TRANSFAC - 42694704 42694720 9.0E-06 CAGATTAATTACTGCTT 17 V_SF1_Q6_01_M01132 TRANSFAC + 42694447 42694455 3.0E-06 TGACCTTGA 9 V_ELF1_Q6_M00746 TRANSFAC + 42694348 42694359 2.0E-06 AGAAGAGGAAGA 12 V_HOXB7_01_M01396 TRANSFAC - 42694704 42694719 2.0E-06 AGATTAATTACTGCTT 16 V_HOXB7_01_M01396 TRANSFAC + 42694706 42694721 6.0E-06 GCAGTAATTAATCTGT 16 V_HOXA7_02_M01336 TRANSFAC + 42694705 42694721 3.0E-06 AGCAGTAATTAATCTGT 17 V_HOXB8_01_M01451 TRANSFAC + 42694705 42694720 6.0E-06 AGCAGTAATTAATCTG 16 V_IPF1_05_M01255 TRANSFAC - 42688783 42688794 3.0E-06 ACTCATTAAATG 12 V_BARHL1_01_M01332 TRANSFAC + 42688777 42688792 6.0E-06 AGCAAGCATTTAATGA 16 V_MSX2_01_M01393 TRANSFAC - 42694705 42694721 4.0E-06 ACAGATTAATTACTGCT 17 V_ERR1_Q2_M00511 TRANSFAC - 42694445 42694458 0.0E+00 ACCTCAAGGTCATT 14 V_ERR2_01_M01589 TRANSFAC - 42694444 42694455 8.0E-06 TCAAGGTCATTT 12 V_AIRE_01_M00999 TRANSFAC - 42688832 42688857 2.0E-06 AATAGAATAGGTAATTTTGGAAGTCA 26 V_NRSF_01_M00256 TRANSFAC + 42688670 42688690 8.0E-06 ACCAGCACCTCCCACAGCCCA 21 V_FOXO3_01_M00477 TRANSFAC - 42688765 42688778 3.0E-06 CTGGTGTTTACTTA 14 V_FOXA2_03_M02260 TRANSFAC - 42688763 42688774 0.0E+00 TGTTTACTTAGC 12 V_BARX2_01_M01431 TRANSFAC - 42694704 42694719 8.0E-06 AGATTAATTACTGCTT 16 V_RSRFC4_01_M00026 TRANSFAC + 42694388 42694403 6.0E-06 AATTTAAAAATAGCTC 16 V_RSRFC4_01_M00026 TRANSFAC - 42694388 42694403 0.0E+00 GAGCTATTTTTAAATT 16 V_T3RBETA_Q6_01_M02119 TRANSFAC - 42694436 42694452 5.0E-06 AGGTCATTTGAGGAGAA 17 V_ESRRA_03_M02748 TRANSFAC - 42694442 42694458 0.0E+00 ACCTCAAGGTCATTTGA 17 V_SRF_Q5_01_M00922 TRANSFAC - 42695163 42695177 1.0E-06 CCATAGATGGCGATG 15 V_SRF_Q4_M00810 TRANSFAC - 42695161 42695178 8.0E-06 GCCATAGATGGCGATGAT 18 V_HOXC5_01_M01454 TRANSFAC - 42694704 42694720 8.0E-06 CAGATTAATTACTGCTT 17 V_HOXC5_01_M01454 TRANSFAC + 42694705 42694721 9.0E-06 AGCAGTAATTAATCTGT 17 V_SRF_02_M01257 TRANSFAC - 42695162 42695179 8.0E-06 GGCCATAGATGGCGATGA 18 V_HFH3_01_M00289 TRANSFAC - 42688765 42688777 2.0E-06 TGGTGTTTACTTA 13 V_LHX9_01_M01367 TRANSFAC + 42694705 42694721 7.0E-06 AGCAGTAATTAATCTGT 17 V_MEF2_01_M00006 TRANSFAC + 42694389 42694404 0.0E+00 ATTTAAAAATAGCTCT 16 V_HOXD3_01_M01338 TRANSFAC + 42694704 42694719 6.0E-06 AAGCAGTAATTAATCT 16 V_FREAC4_01_M00292 TRANSFAC + 42688763 42688778 1.0E-06 GCTAAGTAAACACCAG 16 V_MEF2A_05_M01301 TRANSFAC - 42694391 42694402 0.0E+00 AGCTATTTTTAA 12 V_HMEF2_Q6_M00406 TRANSFAC + 42688836 42688851 5.0E-06 TTCCAAAATTACCTAT 16 V_HMEF2_Q6_M00406 TRANSFAC + 42694389 42694404 0.0E+00 ATTTAAAAATAGCTCT 16 V_BRN3C_01_M01408 TRANSFAC + 42688781 42688796 8.0E-06 AGCATTTAATGAGTAC 16 V_HMX3_02_M01413 TRANSFAC + 42688778 42688794 3.0E-06 GCAAGCATTTAATGAGT 17 V_DLX1_01_M01439 TRANSFAC + 42694704 42694717 2.0E-06 AAGCAGTAATTAAT 14 V_GFI1_Q6_01_M02010 TRANSFAC - 42694335 42694344 4.0E-06 CTCTGATTTT 10 V_OBOX5_01_M01381 TRANSFAC + 42694356 42694372 9.0E-06 AAGAAAGATTTAATGTA 17 V_OBOX5_01_M01381 TRANSFAC - 42694708 42694724 9.0E-06 CTGACAGATTAATTACT 17 V_FEV_01_M02269 TRANSFAC + 42694264 42694271 1.0E-05 CAGGAAAT 8 V_OBOX6_06_M03067 TRANSFAC - 42694356 42694372 9.0E-06 TACATTAAATCTTTCTT 17 V_OBOX6_06_M03067 TRANSFAC + 42694708 42694724 9.0E-06 AGTAATTAATCTGTCAG 17 V_HOXC9_01_M01416 TRANSFAC + 42694705 42694720 2.0E-06 AGCAGTAATTAATCTG 16 V_HOXC8_01_M01321 TRANSFAC + 42694704 42694719 5.0E-06 AAGCAGTAATTAATCT 16

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