Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RBP4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5950 retinol binding protein 4, plasma chr10 - 95360493 - 95365993 95360993 Transcription Factor Binding Sites   Download all TFBS in the RBP4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP3_C2H2_DBD_monomeric_11_1 SELEX + 95360770 95360780 6.0E-06 CCCACACCCAC 11 IRF7_IRF_DBD_dimeric_14_1 SELEX - 95361482 95361495 5.0E-06 TATAAAATGAAAAA 14 En1_MA0027.1 JASPAR + 95361476 95361486 8.0E-06 AAGTAGTTTTT 11 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 95358093 95358104 5.0E-06 GAAACGATCATA 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 95364076 95364089 4.0E-06 AAGTAACATTTATA 14 ZNF238_C2H2_full_monomeric_13_1 SELEX - 95364091 95364103 3.0E-06 GGTCCAGATGTGG 13 SPIB_ETS_DBD_monomeric_14_1 SELEX + 95364121 95364134 1.0E-05 AAAACAAGGAAGTG 14 IRF1_MA0050.1 JASPAR - 95358099 95358110 5.0E-06 CAAAGTGAAACG 12 ETV2_ETS_DBD_monomeric_11_1 SELEX + 95361628 95361638 9.0E-06 GACAGGAAATA 11 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 95364076 95364089 9.0E-06 AAGTAACATTTATA 14 ELF3_ETS_full_monomeric_13_1 SELEX + 95364123 95364135 7.0E-06 AACAAGGAAGTGG 13 SP1_MA0079.2 JASPAR - 95361030 95361039 3.0E-06 CCCCTCCCCC 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 95358112 95358124 3.0E-06 AGATGACGAAATA 13 Mycn_MA0104.2 JASPAR + 95360346 95360355 8.0E-06 CCCACGTGGC 10 FEV_MA0156.1 JASPAR + 95361630 95361637 1.0E-05 CAGGAAAT 8 ELF3_ETS_DBD_monomeric_12_1 SELEX + 95364123 95364134 1.0E-05 AACAAGGAAGTG 12 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 95361201 95361219 8.0E-06 TTGGCCTGGCCGAGGCCAC 19 Sox2_MA0143.1 JASPAR + 95357008 95357022 4.0E-06 GCATTGTTATTCAGT 15 NHLH1_bHLH_full_dimeric_10_1 SELEX + 95360399 95360408 9.0E-06 CGCAGCTGCC 10 ZNF784_C2H2_full_monomeric_10_1 SELEX - 95358083 95358092 9.0E-06 GAACCTACCT 10 IRF2_MA0051.1 JASPAR - 95358094 95358111 4.0E-06 GCAAAGTGAAACGATCAT 18 V_DMRT4_01_M01149 TRANSFAC + 95364075 95364087 6.0E-06 AAAGTAACATTTA 13 V_SPI1_01_M01203 TRANSFAC + 95364121 95364137 1.0E-05 AAAACAAGGAAGTGGAG 17 V_DMRT3_01_M01148 TRANSFAC - 95364073 95364087 4.0E-06 TAAATGTTACTTTGT 15 V_HMGIY_Q3_M01010 TRANSFAC - 95364109 95364123 7.0E-06 TTTTCATTTTTCTTG 15 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 95361592 95361603 0.0E+00 AATATTTAACAG 12 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 95361598 95361609 1.0E-06 AATATTCTCCAG 12 V_ETS_B_M00340 TRANSFAC + 95361628 95361641 0.0E+00 GACAGGAAATATTT 14 V_ESE1_01_M01977 TRANSFAC + 95361629 95361638 8.0E-06 ACAGGAAATA 10 V_SPDEF_04_M02915 TRANSFAC - 95361492 95361507 2.0E-06 AAATACATCCTTTATA 16 V_IRF_Q6_01_M00972 TRANSFAC + 95364113 95364123 2.0E-06 AAAAATGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 95358097 95358112 9.0E-06 TGCAAAGTGAAACGAT 16 V_IRF2_Q6_M01882 TRANSFAC + 95364111 95364126 2.0E-06 AGAAAAATGAAAAACA 16 V_RP58_01_M00532 TRANSFAC + 95364090 95364101 4.0E-06 CCCACATCTGGA 12 V_SP1_03_M02281 TRANSFAC - 95361030 95361039 3.0E-06 CCCCTCCCCC 10 V_AP2_Q6_M00189 TRANSFAC - 95361025 95361036 4.0E-06 CTCCCCCCGGCG 12 V_AP4_Q6_02_M01860 TRANSFAC + 95361269 95361281 2.0E-06 CCAGCTGCGGTCT 13 V_BARBIE_01_M00238 TRANSFAC + 95356599 95356613 5.0E-06 ATCTAAAGCAGCAAG 15 V_HNF1_C_M00206 TRANSFAC + 95361593 95361609 1.0E-06 TGTTAAATATTCTCCAG 17 V_RPC155_01_M01798 TRANSFAC - 95358179 95358194 0.0E+00 TCCTAAGTTCAAATCC 16 V_IRF2_01_M00063 TRANSFAC - 95358099 95358111 3.0E-06 GCAAAGTGAAACG 13 V_IRF3_Q3_M01279 TRANSFAC + 95358097 95358109 8.0E-06 ATCGTTTCACTTT 13 V_IRF_Q6_M00772 TRANSFAC - 95364113 95364127 1.0E-06 TTGTTTTTCATTTTT 15 V_ELF5_01_M01197 TRANSFAC + 95361494 95361504 6.0E-06 TAAAGGATGTA 11 V_REST_01_M01256 TRANSFAC + 95358019 95358040 8.0E-06 CTCAGGCACTGTTCTGAGTGCT 22 V_SOX12_04_M02900 TRANSFAC + 95357998 95358013 1.0E-05 ACACTTACAAAGAACT 16 V_BBX_04_M02843 TRANSFAC - 95356919 95356935 4.0E-06 TGCTTGTTAACAAATGC 17 V_CETS1P54_01_M00032 TRANSFAC + 95361629 95361638 1.0E-05 ACAGGAAATA 10 V_MYCN_01_M02259 TRANSFAC + 95360346 95360355 8.0E-06 CCCACGTGGC 10 V_OCT4_02_M01124 TRANSFAC + 95361484 95361498 8.0E-06 TTTCATTTTATAAAG 15 V_FOXO1_Q5_M01216 TRANSFAC + 95364120 95364128 8.0E-06 AAAAACAAG 9 V_MTF1_06_M02882 TRANSFAC + 95364113 95364126 2.0E-06 AAAAATGAAAAACA 14 V_HEN1_02_M00058 TRANSFAC + 95360393 95360414 9.0E-06 AAAGGGCGCAGCTGCCCCGGCG 22 V_BDP1_01_M01796 TRANSFAC + 95358179 95358190 2.0E-06 GGATTTGAACTT 12 V_FOXO3_01_M00477 TRANSFAC - 95356922 95356935 3.0E-06 TGCTTGTTAACAAA 14 V_MTATA_B_M00320 TRANSFAC - 95361010 95361026 6.0E-06 CGCTATAAAGCAGCGGG 17 V_PLZF_02_M01075 TRANSFAC + 95361482 95361510 3.0E-06 TTTTTCATTTTATAAAGGATGTATTTTAC 29 V_ETS1_B_M00339 TRANSFAC + 95361629 95361643 5.0E-06 ACAGGAAATATTTTA 15 V_ZFP281_01_M01597 TRANSFAC + 95361029 95361039 2.0E-06 GGGGGGAGGGG 11 V_IRF1_Q6_01_M01881 TRANSFAC + 95358098 95358111 8.0E-06 TCGTTTCACTTTGC 14 V_DMRT2_01_M01147 TRANSFAC - 95364073 95364088 2.0E-06 ATAAATGTTACTTTGT 16 V_SOX2_01_M02246 TRANSFAC + 95357008 95357022 4.0E-06 GCATTGTTATTCAGT 15 V_NFE2_Q6_M02104 TRANSFAC - 95358044 95358059 3.0E-06 AATGAGTCAACAGGCA 16 V_EKLF_Q5_M01874 TRANSFAC + 95360771 95360780 9.0E-06 CCACACCCAC 10 V_HOMEZ_01_M01429 TRANSFAC - 95361490 95361506 6.0E-06 AATACATCCTTTATAAA 17 V_IRF1_01_M00062 TRANSFAC + 95364112 95364124 3.0E-06 GAAAAATGAAAAA 13 V_LTF_Q6_M01692 TRANSFAC + 95361091 95361099 6.0E-06 GGCACTTGC 9 V_BRF1_01_M01747 TRANSFAC - 95358178 95358190 2.0E-06 AAGTTCAAATCCC 13 V_FEV_01_M02269 TRANSFAC + 95361630 95361637 1.0E-05 CAGGAAAT 8 V_DMRT1_01_M01146 TRANSFAC - 95364070 95364084 3.0E-06 ATGTTACTTTGTATA 15 V_ARID5A_04_M02840 TRANSFAC + 95364065 95364081 9.0E-06 CATTTTATACAAAGTAA 17 V_DMRT5_01_M01150 TRANSFAC - 95364072 95364086 2.0E-06 AAATGTTACTTTGTA 15 V_NANOG_02_M01247 TRANSFAC - 95357003 95357022 2.0E-06 ACTGAATAACAATGCAAGCC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.