Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LGR6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 59352 leucine-rich repeat containing G protein-coupled receptor 6 chr1 + 202158117 - 202163617 202163117 Transcription Factor Binding Sites   Download all TFBS in the LGR6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 202158224 202158242 0.0E+00 TAGCCACCAGGTGGCGCTG 19 CTCF_MA0139.1 JASPAR + 202162128 202162146 0.0E+00 CGGCCTCCAGGTGGCACCA 19 CTCF_MA0139.1 JASPAR + 202175133 202175151 2.0E-06 CCGCCTGCAGGGGGCGCTC 19 SOX21_HMG_DBD_dimeric_15_1 SELEX + 202175166 202175180 3.0E-06 AACAGTTCCAGTGTA 15 SOX4_HMG_DBD_dimeric_16_1 SELEX + 202175165 202175180 0.0E+00 AAACAGTTCCAGTGTA 16 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 202158694 202158707 7.0E-06 GGGGCCATAGGTCA 14 SOX10_HMG_full_dimeric_15_3 SELEX - 202159213 202159227 9.0E-06 ATGCAGTGCAGTCCT 15 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 202158694 202158709 9.0E-06 TAGGGGCCATAGGTCA 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 202172961 202172977 1.0E-06 ACAAACAAGTGTCAACC 17 FOXL1_forkhead_full_dimeric_13_1 SELEX + 202172982 202172994 4.0E-06 TGTCAATAATCAT 13 FOXO3_MA0157.1 JASPAR + 202175162 202175169 7.0E-06 TGTAAACA 8 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 202158694 202158707 3.0E-06 GGGGCCATAGGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 202158694 202158707 3.0E-06 GGGGCCATAGGTCA 14 SOX8_HMG_full_dimeric_15_1 SELEX + 202175166 202175180 2.0E-06 AACAGTTCCAGTGTA 15 TBX19_TBX_DBD_dimeric_20_1 SELEX + 202172962 202172981 5.0E-06 GTTGACACTTGTTTGTCAAG 20 TBX19_TBX_DBD_dimeric_20_1 SELEX - 202172962 202172981 7.0E-06 CTTGACAAACAAGTGTCAAC 20 EWSR1-FLI1_MA0149.1 JASPAR - 202175191 202175208 7.0E-06 GAGAGGAAGGGAGAAAAA 18 ZNF232_C2H2_full_monomeric_19_1 SELEX + 202172707 202172725 0.0E+00 GTGACAAATGTGGATTGAA 19 STAT1_MA0137.2 JASPAR - 202176614 202176628 6.0E-06 TCATTCCCAGAAACA 15 GATA5_GATA_DBD_monomeric_8_1 SELEX + 202172766 202172773 7.0E-06 AGATAAGA 8 Sox17_HMG_DBD_dimeric_15_1 SELEX + 202175166 202175180 1.0E-06 AACAGTTCCAGTGTA 15 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 202169478 202169495 1.0E-06 GGGGTGAATGGGTCATTT 18 GATA4_GATA_DBD_monomeric_8_1 SELEX + 202172766 202172773 7.0E-06 AGATAAGA 8 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 202172975 202172986 3.0E-06 TGTCAAGTGTCA 12 Sox17_HMG_DBD_dimeric_15_2 SELEX + 202175180 202175194 9.0E-06 ATGCATTTCATTTTT 15 RELA_MA0107.1 JASPAR + 202159286 202159295 5.0E-06 GGGAGTTTCC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 202158693 202158707 3.0E-06 GGGGCCATAGGTCAC 15 NFIX_NFI_full_monomeric_9_2 SELEX + 202169691 202169699 8.0E-06 AATGCCAAT 9 SOX18_HMG_full_dimeric_15_1 SELEX + 202175166 202175180 2.0E-06 AACAGTTCCAGTGTA 15 NFATC1_NFAT_full_dimeric_20_1 SELEX + 202169231 202169250 9.0E-06 CAGGGAAACAGGCCTTTCAA 20 CTCF_C2H2_full_monomeric_17_1 SELEX - 202158225 202158241 0.0E+00 AGCGCCACCTGGTGGCT 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 202158694 202158707 6.0E-06 GGGGCCATAGGTCA 14 SOX7_HMG_full_dimeric_17_1 SELEX + 202175165 202175181 0.0E+00 AAACAGTTCCAGTGTAT 17 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 202169478 202169493 2.0E-06 GGGGTGAATGGGTCAT 16 Gata1_MA0035.2 JASPAR + 202172764 202172774 3.0E-06 AGAGATAAGAC 11 GATA3_GATA_full_monomeric_8_1 SELEX + 202172766 202172773 7.0E-06 AGATAAGA 8 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 202175170 202175184 1.0E-05 TGCATACACTGGAAC 15 MGA_TBX_DBD_dimeric_18_1 SELEX + 202162300 202162317 1.0E-05 GGGTGTAACTCCACACCC 18 MGA_TBX_DBD_dimeric_18_1 SELEX - 202162300 202162317 3.0E-06 GGGTGTGGAGTTACACCC 18 T_TBX_full_dimeric_16_1 SELEX + 202172964 202172979 1.0E-05 TGACACTTGTTTGTCA 16 Evi1_MA0029.1 JASPAR + 202172765 202172778 1.0E-06 GAGATAAGACAAGC 14 FEV_MA0156.1 JASPAR - 202173068 202173075 1.0E-05 CAGGAAAT 8 TFAP2A_MA0003.1 JASPAR + 202158271 202158279 8.0E-06 GCCCTAGGG 9 Sox11_HMG_DBD_dimeric_15_1 SELEX + 202175166 202175180 1.0E-06 AACAGTTCCAGTGTA 15 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 202158685 202158700 9.0E-06 TAGGTCACCTAGTTCA 16 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 202158694 202158708 2.0E-06 AGGGGCCATAGGTCA 15 Sox3_HMG_DBD_dimeric_17_1 SELEX + 202175165 202175181 2.0E-06 AAACAGTTCCAGTGTAT 17 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 202158694 202158707 7.0E-06 GGGGCCATAGGTCA 14 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 202169478 202169492 3.0E-06 GGGGTGAATGGGTCA 15 RREB1_MA0073.1 JASPAR - 202169500 202169519 6.0E-06 CCCCACAACAACACTCCCAA 20 RREB1_MA0073.1 JASPAR - 202169503 202169522 2.0E-06 AACCCCCACAACAACACTCC 20 RREB1_MA0073.1 JASPAR - 202169507 202169526 8.0E-06 CCCCAACCCCCACAACAACA 20 RREB1_MA0073.1 JASPAR - 202169508 202169527 9.0E-06 CCCCCAACCCCCACAACAAC 20 RREB1_MA0073.1 JASPAR + 202175091 202175110 0.0E+00 ACACACAACACACACACACA 20 RREB1_MA0073.1 JASPAR + 202175093 202175112 0.0E+00 ACACAACACACACACACACA 20 SOX9_HMG_full_dimeric_17_1 SELEX + 202175165 202175181 0.0E+00 AAACAGTTCCAGTGTAT 17 V_AP2ALPHA_01_M00469 TRANSFAC + 202158271 202158279 8.0E-06 GCCCTAGGG 9 V_MEQ_01_M02049 TRANSFAC + 202175074 202175082 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC + 202175097 202175105 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC - 202176708 202176716 7.0E-06 AACACACAC 9 V_NFKAPPAB65_01_M00052 TRANSFAC + 202159286 202159295 7.0E-06 GGGAGTTTCC 10 V_ER_Q6_02_M00959 TRANSFAC - 202172786 202172796 2.0E-06 CAGGTCACAGT 11 V_SPI1_01_M01203 TRANSFAC + 202171297 202171313 1.0E-05 AGAATGAGGAACCACAT 17 V_STAT5A_Q6_M01890 TRANSFAC - 202169434 202169446 9.0E-06 TAATTTCAAGGAA 13 V_STAT5A_Q6_M01890 TRANSFAC + 202176613 202176625 6.0E-06 GTGTTTCTGGGAA 13 V_NFKB_Q6_01_M00774 TRANSFAC - 202159285 202159300 7.0E-06 CACCTGGAAACTCCCA 16 V_FOXO3_02_M02270 TRANSFAC + 202175162 202175169 7.0E-06 TGTAAACA 8 V_AREB6_03_M00414 TRANSFAC - 202159292 202159303 6.0E-06 CTGCACCTGGAA 12 V_GATA2_02_M00348 TRANSFAC + 202172764 202172773 0.0E+00 AGAGATAAGA 10 V_GM397_03_M02760 TRANSFAC - 202176753 202176769 7.0E-06 GGTTTGTGCACTTACCC 17 V_ETS_B_M00340 TRANSFAC + 202166146 202166159 8.0E-06 TGCAGGAAGTAGCA 14 V_ESE1_01_M01977 TRANSFAC - 202173067 202173076 8.0E-06 ACAGGAAATA 10 V_HOXA13_02_M01297 TRANSFAC - 202173063 202173071 4.0E-06 AAATAAAAT 9 V_IRF_Q6_01_M00972 TRANSFAC - 202175184 202175194 2.0E-06 AAAAATGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC - 202175181 202175196 2.0E-06 GAAAAAATGAAATGCA 16 V_EVI1_02_M00079 TRANSFAC + 202172766 202172776 1.0E-06 AGATAAGACAA 11 V_AP4_Q6_M00176 TRANSFAC - 202162176 202162185 2.0E-06 CTCAGCTGGT 10 V_P53_DECAMER_Q2_M00761 TRANSFAC + 202169529 202169538 9.0E-06 AGACATGCCC 10 V_GATA_C_M00203 TRANSFAC + 202172766 202172776 3.0E-06 AGATAAGACAA 11 V_PPAR_DR1_Q2_M00763 TRANSFAC + 202158694 202158706 2.0E-06 TGACCTATGGCCC 13 V_PRX2_Q2_M02115 TRANSFAC - 202162153 202162161 7.0E-06 TCAAAGTAA 9 V_BRN2_01_M00145 TRANSFAC + 202169567 202169582 6.0E-06 CTCATTCTTAATGGGC 16 V_LDSPOLYA_B_M00317 TRANSFAC - 202175070 202175085 2.0E-06 TGTGTGTGTGTTCTTG 16 V_CETS1P54_02_M00074 TRANSFAC - 202173066 202173078 9.0E-06 TCACAGGAAATAA 13 V_TAL1_GATA1_01_M02243 TRANSFAC + 202172755 202172772 0.0E+00 CTTGGAGAGAGAGATAAG 18 V_AP1_Q6_M00174 TRANSFAC - 202169599 202169609 7.0E-06 AGTGACTCACT 11 V_ETS_Q4_M00771 TRANSFAC - 202166148 202166159 7.0E-06 TGCTACTTCCTG 12 RXRA_VDR_MA0074.1 JASPAR - 202158685 202158699 6.0E-06 AGGTCACCTAGTTCA 15 V_FKLF_Q5_M01837 TRANSFAC + 202158171 202158180 2.0E-06 GGGGTGGGAG 10 V_TCFAP2C_03_M02821 TRANSFAC - 202158722 202158736 3.0E-06 ATTGCTTCAGGGGAA 15 V_E2F1_01_M01250 TRANSFAC + 202162317 202162324 1.0E-05 CGTTTCTT 8 V_ZBTB7B_04_M02930 TRANSFAC - 202162228 202162244 5.0E-06 CTGGGGACCACCTTGAT 17 V_NKX61_01_M00424 TRANSFAC + 202169571 202169583 4.0E-06 TTCTTAATGGGCT 13 V_XFD3_01_M00269 TRANSFAC + 202172980 202172993 2.0E-06 AGTGTCAATAATCA 14 V_HES1_Q2_M01009 TRANSFAC + 202172865 202172879 2.0E-06 AACGCTTGTGTCTAA 15 V_AP1_Q4_M00188 TRANSFAC - 202169599 202169609 2.0E-06 AGTGACTCACT 11 V_FOXK1_04_M02856 TRANSFAC - 202169504 202169518 3.0E-06 CCCACAACAACACTC 15 V_EVI1_01_M00078 TRANSFAC + 202172766 202172781 1.0E-06 AGATAAGACAAGCGCA 16 V_STAT5A_02_M00460 TRANSFAC - 202169419 202169442 2.0E-06 TTCAAGGAACTCTGATTTCTGGGG 24 V_MATH1_Q2_M01716 TRANSFAC - 202158228 202158237 9.0E-06 CCACCTGGTG 10 V_JUNDM2_04_M02876 TRANSFAC - 202169597 202169612 4.0E-06 AATAGTGACTCACTAG 16 V_GR_01_M00955 TRANSFAC + 202171355 202171381 1.0E-06 CTCCCTGGGGCAGCATGTTCTAGAGCA 27 Tal1_Gata1_MA0140.1 JASPAR + 202172755 202172772 0.0E+00 CTTGGAGAGAGAGATAAG 18 V_AP4_Q5_M00175 TRANSFAC - 202162176 202162185 1.0E-06 CTCAGCTGGT 10 V_ZBRK1_01_M01105 TRANSFAC + 202169233 202169247 0.0E+00 GGGAAACAGGCCTTT 15 V_SPIB_01_M01204 TRANSFAC + 202171297 202171313 6.0E-06 AGAATGAGGAACCACAT 17 V_TEL2_Q6_M00678 TRANSFAC - 202166148 202166157 1.0E-06 CTACTTCCTG 10 V_GATA1_09_M02254 TRANSFAC + 202172764 202172774 3.0E-06 AGAGATAAGAC 11 V_RREB1_01_M00257 TRANSFAC - 202169506 202169519 3.0E-06 CCCCACAACAACAC 14 V_RREB1_01_M00257 TRANSFAC - 202169513 202169526 4.0E-06 CCCCAACCCCCACA 14 V_CETS1P54_01_M00032 TRANSFAC - 202173067 202173076 1.0E-05 ACAGGAAATA 10 V_HNF4_DR1_Q3_M00764 TRANSFAC + 202158694 202158706 4.0E-06 TGACCTATGGCCC 13 V_STAT4_Q5_M02117 TRANSFAC - 202176731 202176740 0.0E+00 TTATAAGAAA 10 V_LMO2COM_01_M00277 TRANSFAC + 202162112 202162123 3.0E-06 CTGCAGGTGCAG 12 V_CTCF_02_M01259 TRANSFAC + 202158221 202158240 0.0E+00 GGGTAGCCACCAGGTGGCGC 20 V_CTCF_02_M01259 TRANSFAC + 202162125 202162144 1.0E-06 ACCCGGCCTCCAGGTGGCAC 20 V_CTCF_02_M01259 TRANSFAC + 202175130 202175149 3.0E-06 TCTCCGCCTGCAGGGGGCGC 20 V_STAT3_03_M01595 TRANSFAC + 202176615 202176630 8.0E-06 GTTTCTGGGAATGAGG 16 V_CTCF_01_M01200 TRANSFAC + 202158223 202158242 0.0E+00 GTAGCCACCAGGTGGCGCTG 20 V_CTCF_01_M01200 TRANSFAC + 202162127 202162146 0.0E+00 CCGGCCTCCAGGTGGCACCA 20 V_CTCF_01_M01200 TRANSFAC + 202175132 202175151 0.0E+00 TCCGCCTGCAGGGGGCGCTC 20 V_GABPBETA_Q3_M01876 TRANSFAC - 202175197 202175207 1.0E-05 AGAGGAAGGGA 11 V_FAC1_01_M00456 TRANSFAC + 202175091 202175104 0.0E+00 ACACACAACACACA 14 V_TAL1_01_M01591 TRANSFAC - 202172764 202172776 4.0E-06 TTGTCTTATCTCT 13 V_AP1FJ_Q2_M00172 TRANSFAC - 202169599 202169609 7.0E-06 AGTGACTCACT 11 V_DR1_Q3_M00762 TRANSFAC - 202158694 202158706 4.0E-06 GGGCCATAGGTCA 13 V_ZBTB3_03_M02825 TRANSFAC + 202159215 202159231 6.0E-06 GACTGCACTGCATACCA 17 V_SIRT6_01_M01797 TRANSFAC + 202172766 202172773 7.0E-06 AGATAAGA 8 V_E2F6_01_M01252 TRANSFAC + 202162317 202162324 1.0E-05 CGTTTCTT 8 V_GATA3_02_M00350 TRANSFAC + 202172764 202172773 1.0E-06 AGAGATAAGA 10 V_PLAG1_01_M01778 TRANSFAC + 202172849 202172864 5.0E-06 GGGGCACAGAGGAGGG 16 NR1H2_RXRA_MA0115.1 JASPAR - 202158692 202158708 1.0E-06 AGGGGCCATAGGTCACC 17 V_PARP_Q3_M01211 TRANSFAC + 202172807 202172816 8.0E-06 TGAGAAATAC 10 V_ZBTB12_03_M02824 TRANSFAC + 202171366 202171382 2.0E-06 AGCATGTTCTAGAGCAG 17 V_STAT1STAT1_Q3_M01212 TRANSFAC - 202169432 202169444 5.0E-06 ATTTCAAGGAACT 13 V_T3RBETA_Q6_01_M02119 TRANSFAC + 202175142 202175158 8.0E-06 GGGGGCGCTCAGGACAG 17 V_ETS1_B_M00339 TRANSFAC + 202166147 202166161 7.0E-06 GCAGGAAGTAGCAGG 15 V_ZFP281_01_M01597 TRANSFAC + 202169515 202169525 9.0E-06 TGGGGGTTGGG 11 V_OCT1_06_M00162 TRANSFAC - 202175181 202175194 4.0E-06 AAAAATGAAATGCA 14 V_TITF1_Q3_M00432 TRANSFAC + 202172975 202172984 8.0E-06 TGTCAAGTGT 10 V_TBX22_01_M01195 TRANSFAC + 202169477 202169495 1.0E-06 AGGGGTGAATGGGTCATTT 19 V_TCFAP2A_03_M02819 TRANSFAC - 202158722 202158736 2.0E-06 ATTGCTTCAGGGGAA 15 V_GATA2_03_M00349 TRANSFAC + 202172764 202172773 0.0E+00 AGAGATAAGA 10 V_EWSR1FLI1_01_M02252 TRANSFAC - 202175191 202175208 7.0E-06 GAGAGGAAGGGAGAAAAA 18 V_TFE_Q6_M01029 TRANSFAC + 202172703 202172710 1.0E-05 TCATGTGA 8 V_ARP1_01_M00155 TRANSFAC - 202169976 202169991 6.0E-06 CCAACCCCTGAGCTCT 16 V_RXRLXRB_01_M01198 TRANSFAC - 202158694 202158706 4.0E-06 GGGCCATAGGTCA 13 V_MAFK_04_M02880 TRANSFAC - 202175183 202175197 7.0E-06 AGAAAAAATGAAATG 15 V_GATA6_04_M02757 TRANSFAC + 202172761 202172777 8.0E-06 GAGAGAGATAAGACAAG 17 V_FEV_01_M02269 TRANSFAC - 202173068 202173075 1.0E-05 CAGGAAAT 8 V_CDPCR3_01_M00105 TRANSFAC - 202172985 202172999 1.0E-05 CAGAGATGATTATTG 15 V_STAT1_Q6_M01823 TRANSFAC + 202169229 202169238 8.0E-06 TTCAGGGAAA 10 V_GLIS2_04_M02863 TRANSFAC - 202169199 202169212 9.0E-06 TTTGTTAGTAAAGG 14 V_STAT1_05_M01260 TRANSFAC + 202176614 202176635 6.0E-06 TGTTTCTGGGAATGAGGCAGTT 22 V_EVI1_03_M00080 TRANSFAC + 202172766 202172776 6.0E-06 AGATAAGACAA 11 V_VDRRXR_01_M01202 TRANSFAC - 202158685 202158699 6.0E-06 AGGTCACCTAGTTCA 15 V_GATA1_06_M00347 TRANSFAC + 202172764 202172773 3.0E-06 AGAGATAAGA 10 V_PPARG_01_M00512 TRANSFAC - 202158690 202158710 5.0E-06 ATAGGGGCCATAGGTCACCTA 21 V_ER_Q6_M00191 TRANSFAC + 202172779 202172797 0.0E+00 GCAAATAACTGTGACCTGT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.