Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

RBM3


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
5935 RNA binding motif (RNP1, RRM) protein 3 chrX +48427740 - 48433240 48432740

Transcription Factor Binding Sites

 
Download all TFBS in the RBM3 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
SOX10_HMG_full_dimeric_16_1 SELEX - 48428758 48428773 9.0E-06 AATAATATTAACTGTG 16
Creb3l2_bZIP_DBD_dimeric_12_1 SELEX + 48433229 48433240 9.0E-06 TCCCACGTGGCC 12
RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 48432090 48432105 4.0E-06 GCGGTTCACGAGTTCA 16
SPIC_ETS_full_monomeric_14_1 SELEX - 48432860 48432873 5.0E-06 ATAAAGAGTACGTA 14
ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 48433493 48433504 5.0E-06 TATTTTCTCACA 12
EWSR1-FLI1_MA0149.1 JASPAR + 48432617 48432634 3.0E-06 GGAAGGGATAAAGGCAGC 18
SOX9_HMG_DBD_monomeric_9_1 SELEX - 48437106 48437114 9.0E-06 GAACAATGG 9
NFYA_MA0060.1 JASPAR + 48432801 48432816 0.0E+00 CTCAGCCAATCAGCAC 16
GATA5_GATA_DBD_monomeric_8_1 SELEX - 48437093 48437100 7.0E-06 AGATAAGA 8
GCM1_GCM_full_dimeric_16_1 SELEX + 48437164 48437179 8.0E-06 ATAGTGGTACCAGTTC 16
GATA4_GATA_DBD_monomeric_8_1 SELEX - 48437093 48437100 7.0E-06 AGATAAGA 8
FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 48428761 48428774 4.0E-06 AGTTAATATTATTA 14
FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 48428761 48428774 0.0E+00 TAATAATATTAACT 14
PROP1_homeodomain_full_dimeric_11_1 SELEX + 48428764 48428774 8.0E-06 TAATATTATTA 11
FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 48428761 48428774 9.0E-06 AGTTAATATTATTA 14
FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 48428761 48428774 1.0E-06 TAATAATATTAACT 14
NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 48432427 48432442 2.0E-06 AGGCCTTTAAAGGGTA 16
NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 48432427 48432442 2.0E-06 TACCCTTTAAAGGCCT 16
FOXI1_MA0042.1 JASPAR + 48437000 48437011 9.0E-06 GAATATTTGGTT 12
Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 48432671 48432684 3.0E-06 GCACCAGCTGTTCA 14
Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 48432671 48432684 4.0E-06 TGAACAGCTGGTGC 14
FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 48428761 48428774 3.0E-06 AGTTAATATTATTA 14
FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 48428761 48428774 3.0E-06 TAATAATATTAACT 14
YY2_C2H2_full_monomeric_11_1 SELEX + 48433241 48433251 4.0E-06 GCCGCCATCTT 11
GATA3_GATA_full_monomeric_8_1 SELEX - 48437093 48437100 7.0E-06 AGATAAGA 8
Mycn_MA0104.2 JASPAR + 48433230 48433239 8.0E-06 CCCACGTGGC 10
TBX20_TBX_full_dimeric_16_1 SELEX - 48428622 48428637 2.0E-06 AAGTGATAGTGTGTCA 16
CART1_homeodomain_DBD_dimeric_13_1 SELEX + 48428763 48428775 8.0E-06 TTAATATTATTAA 13
FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 48428761 48428774 4.0E-06 AGTTAATATTATTA 14
FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 48428761 48428774 4.0E-06 TAATAATATTAACT 14
GSC_homeodomain_full_monomeric_10_1 SELEX + 48437147 48437156 2.0E-06 GCTAATCCCT 10
TFAP4_bHLH_full_dimeric_10_1 SELEX + 48432673 48432682 4.0E-06 ACCAGCTGTT 10
TFAP4_bHLH_full_dimeric_10_1 SELEX - 48432673 48432682 7.0E-06 AACAGCTGGT 10
SPDEF_ETS_full_putative-multimer_16_1 SELEX - 48432942 48432957 3.0E-06 AAATTAAAACGTAAAA 16
SOX9_MA0077.1 JASPAR - 48437106 48437114 5.0E-06 GAACAATGG 9
IRF3_IRF_full_trimeric_21_1 SELEX - 48433478 48433498 7.0E-06 AAAATAGCGAGACGGAAAGCA 21
NRF1_NRF_full_dimeric_12_1 SELEX - 48433335 48433346 4.0E-06 TGCGCATGCTCT 12
ELF5_MA0136.1 JASPAR - 48428694 48428702 9.0E-06 AACTTCCTT 9
Sox2_MA0143.1 JASPAR + 48437106 48437120 8.0E-06 CCATTGTTCTGAGAA 15
BATF3_bZIP_DBD_dimeric_14_1 SELEX + 48432393 48432406 6.0E-06 TGATGACATCAGTG 14
MSC_bHLH_full_dimeric_10_1 SELEX + 48432673 48432682 3.0E-06 ACCAGCTGTT 10
MSC_bHLH_full_dimeric_10_1 SELEX - 48432673 48432682 9.0E-06 AACAGCTGGT 10
DPRX_homeodomain_DBD_monomeric_10_1 SELEX - 48437147 48437156 6.0E-06 AGGGATTAGC 10
V_AP1_Q2_M00173 TRANSFAC - 48428660 48428670 7.0E-06 AGTGACTCAAT 11
V_FOXP3_Q4_M00992 TRANSFAC + 48428372 48428388 8.0E-06 GTGGTTCTGACTCAGAG 17
V_IPF1_02_M01234 TRANSFAC + 48428554 48428563 5.0E-06 ACATAATGAG 10
V_HSF1_Q6_M01023 TRANSFAC + 48432842 48432858 3.0E-06 GTTCCGGGACGTTCTCG 17
V_GATA1_Q6_M02004 TRANSFAC - 48437091 48437105 7.0E-06 GACTAAGATAAGAGA 15
V_DUXL_01_M01390 TRANSFAC - 48431399 48431415 7.0E-06 TATCCCAATCAAGTAGT 17
TAL1_TCF3_MA0091.1 JASPAR - 48432673 48432684 5.0E-06 TGAACAGCTGGT 12
V_NF1_Q6_01_M00806 TRANSFAC - 48428478 48428494 6.0E-06 AAGGCCTCTTGCCAACA 17
V_OBOX1_01_M01450 TRANSFAC - 48437144 48437160 9.0E-06 TGATAGGGATTAGCTCA 17
V_ZFX_01_M01593 TRANSFAC - 48437054 48437069 5.0E-06 CAGCAGGCCTCAGGCC 16
V_SOX30_03_M02804 TRANSFAC - 48437102 48437117 4.0E-06 TCAGAACAATGGGACT 16
V_BCL6_01_M01183 TRANSFAC + 48428770 48428785 7.0E-06 TATTAAGATGTTATTT 16
V_DEAF1_01_M01001 TRANSFAC - 48432696 48432720 1.0E-06 CGGAAATGGGGTGTTTCCGGAAATG 25
V_DEAF1_01_M01001 TRANSFAC - 48432713 48432737 0.0E+00 GCGAAATGGGGTGTTTCCGGAAATG 25
V_IK_Q5_M01169 TRANSFAC - 48432114 48432123 3.0E-06 TTTGGGAGGC 10
V_AR_Q6_01_M01996 TRANSFAC + 48433534 48433548 1.0E-06 ATTCTTCATGTTCTT 15
V_PROP1_01_M01294 TRANSFAC + 48428764 48428774 4.0E-06 TAATATTATTA 11
V_PROP1_01_M01294 TRANSFAC - 48428764 48428774 5.0E-06 TAATAATATTA 11
V_FOXJ2_02_M00423 TRANSFAC - 48428773 48428786 3.0E-06 AAAATAACATCTTA 14
V_AP4_Q6_M00176 TRANSFAC - 48432673 48432682 8.0E-06 AACAGCTGGT 10
V_YY1_Q6_M00793 TRANSFAC + 48433244 48433252 7.0E-06 GCCATCTTG 9
V_JUNDM2_03_M02772 TRANSFAC - 48432392 48432407 9.0E-06 TCACTGATGTCATCAC 16
V_PRX2_Q2_M02115 TRANSFAC - 48428763 48428771 8.0E-06 TAATATTAA 9
V_AIRE_02_M01000 TRANSFAC + 48428767 48428791 1.0E-06 TATTATTAAGATGTTATTTTGGCCG 25
V_LYF1_01_M00141 TRANSFAC - 48432115 48432123 9.0E-06 TTTGGGAGG 9
V_NFY_Q6_01_M00775 TRANSFAC + 48432800 48432812 1.0E-06 CCTCAGCCAATCA 13
V_CMYC_02_M01154 TRANSFAC + 48433229 48433240 9.0E-06 TCCCACGTGGCC 12
V_SOX21_03_M02803 TRANSFAC + 48428761 48428776 6.0E-06 AGTTAATATTATTAAG 16
V_SOX21_03_M02803 TRANSFAC - 48428761 48428776 9.0E-06 CTTAATAATATTAACT 16
V_AP1_Q6_M00174 TRANSFAC - 48428660 48428670 5.0E-06 AGTGACTCAAT 11
V_RPC155_01_M01798 TRANSFAC - 48432077 48432092 0.0E+00 TCAGGAGTTCGAGACC 16
V_COMP1_01_M00057 TRANSFAC + 48432441 48432464 6.0E-06 TATGAGGTTAAAGAACTAGAAGGT 24
V_PR_01_M00954 TRANSFAC - 48437111 48437137 3.0E-06 GAGATTAGGTGCTTATGTTCTCAGAAC 27
V_BEL1_B_M00312 TRANSFAC + 48432651 48432678 3.0E-06 GGGATGCTGACGTTTAGGGTGCACCAGC 28
V_ARID5A_03_M02736 TRANSFAC + 48428763 48428776 7.0E-06 TTAATATTATTAAG 14
V_STAT1_01_M00224 TRANSFAC - 48432692 48432712 7.0E-06 GGGTGTTTCCGGAAATGGGGT 21
V_STAT1_01_M00224 TRANSFAC - 48432693 48432713 2.0E-06 GGGGTGTTTCCGGAAATGGGG 21
V_STAT1_01_M00224 TRANSFAC - 48432709 48432729 7.0E-06 GGGTGTTTCCGGAAATGGGGT 21
V_STAT1_01_M00224 TRANSFAC - 48432710 48432730 2.0E-06 GGGGTGTTTCCGGAAATGGGG 21
V_AP1_Q4_M00188 TRANSFAC - 48428660 48428670 4.0E-06 AGTGACTCAAT 11
V_STAT5A_02_M00460 TRANSFAC - 48431427 48431450 8.0E-06 TTCACAGAAGGGACTTTCGCAATA 24
V_OBOX2_01_M01364 TRANSFAC - 48437144 48437160 2.0E-06 TGATAGGGATTAGCTCA 17
V_MATH1_Q2_M01716 TRANSFAC - 48432672 48432681 6.0E-06 ACAGCTGGTG 10
V_SFPI1_04_M02896 TRANSFAC + 48432695 48432708 3.0E-06 CCATTTCCGGAAAC 14
V_SFPI1_04_M02896 TRANSFAC + 48432712 48432725 3.0E-06 CCATTTCCGGAAAC 14
V_YY1_Q6_02_M01035 TRANSFAC + 48433241 48433251 7.0E-06 GCCGCCATCTT 11
V_DUXBL_01_M02968 TRANSFAC - 48431399 48431415 7.0E-06 TATCCCAATCAAGTAGT 17
V_REX1_03_M01744 TRANSFAC - 48433240 48433251 1.0E-06 AAGATGGCGGCG 12
V_PITX3_01_M01343 TRANSFAC - 48437143 48437158 4.0E-06 ATAGGGATTAGCTCAC 16
V_AP4_Q5_M00175 TRANSFAC - 48432673 48432682 8.0E-06 AACAGCTGGT 10
V_CRX_02_M01436 TRANSFAC - 48437145 48437160 4.0E-06 TGATAGGGATTAGCTC 16
V_ATF3_Q6_M00513 TRANSFAC + 48432368 48432381 8.0E-06 GTCTGACATCATGG 14
V_ATF3_Q6_M00513 TRANSFAC - 48432567 48432580 1.0E-06 CCCTGACATCATCC 14
V_NCX_02_M01420 TRANSFAC - 48428766 48428782 9.0E-06 TAACATCTTAATAATAT 17
V_MYCN_01_M02259 TRANSFAC + 48433230 48433239 8.0E-06 CCCACGTGGC 10
V_IK3_01_M00088 TRANSFAC + 48432125 48432137 7.0E-06 TGCTGGGAATACA 13
V_SOX9_B1_M00410 TRANSFAC - 48437104 48437117 0.0E+00 TCAGAACAATGGGA 14
V_ELF4_01_M01979 TRANSFAC - 48432696 48432705 6.0E-06 TCCGGAAATG 10
V_ELF4_01_M01979 TRANSFAC - 48432713 48432722 6.0E-06 TCCGGAAATG 10
V_AP1_Q2_01_M00924 TRANSFAC - 48428657 48428668 5.0E-06 TGACTCAATTGT 12
V_GATA4_Q3_M00632 TRANSFAC - 48432898 48432909 5.0E-06 AAAAAACAGGGA 12
V_PTF1BETA_Q6_M00657 TRANSFAC + 48432835 48432848 7.0E-06 GGGGAACGTTCCGG 14
V_HBP1_04_M02866 TRANSFAC + 48437101 48437117 4.0E-06 TAGTCCCATTGTTCTGA 17
V_YY1_03_M02044 TRANSFAC + 48433241 48433252 1.0E-06 GCCGCCATCTTG 12
V_CAAT_01_M00254 TRANSFAC + 48432801 48432812 2.0E-06 CTCAGCCAATCA 12
V_MYOD_01_M00001 TRANSFAC - 48432672 48432683 7.0E-06 GAACAGCTGGTG 12
V_ALPHACP1_01_M00687 TRANSFAC + 48432803 48432813 1.0E-06 CAGCCAATCAG 11
V_POU6F1_02_M01462 TRANSFAC + 48428552 48428568 1.0E-06 CCACATAATGAGCAGTC 17
V_GABPBETA_Q3_M01876 TRANSFAC - 48432766 48432776 1.0E-05 AGAGGAAGGGA 11
V_OBOX2_02_M03064 TRANSFAC - 48437144 48437160 2.0E-06 TGATAGGGATTAGCTCA 17
V_TAL1_01_M01591 TRANSFAC - 48432322 48432334 8.0E-06 CTTTCTCCTCTGT 13
V_AP1FJ_Q2_M00172 TRANSFAC - 48428660 48428670 1.0E-06 AGTGACTCAAT 11
V_FOXL1_02_M02857 TRANSFAC - 48432942 48432957 8.0E-06 AAATTAAAACGTAAAA 16
V_TAL1ALPHAE47_01_M00066 TRANSFAC - 48432670 48432685 6.0E-06 TTGAACAGCTGGTGCA 16
V_SIRT6_01_M01797 TRANSFAC - 48437093 48437100 7.0E-06 AGATAAGA 8
V_ZSCAN4_04_M02942 TRANSFAC - 48433458 48433473 1.0E-06 AAAAGCACAGAAAATA 16
V_CPHX_01_M01478 TRANSFAC - 48432391 48432404 7.0E-06 CTGATGTCATCACC 14
V_CPHX_01_M01478 TRANSFAC + 48432392 48432405 2.0E-06 GTGATGACATCAGT 14
V_PITX1_01_M01484 TRANSFAC - 48437144 48437160 1.0E-06 TGATAGGGATTAGCTCA 17
V_ZFP206_01_M01742 TRANSFAC - 48433336 48433346 3.0E-06 TGCGCATGCTC 11
V_NFY_01_M00287 TRANSFAC + 48432801 48432816 0.0E+00 CTCAGCCAATCAGCAC 16
V_BDP1_01_M01796 TRANSFAC + 48432077 48432088 2.0E-06 GGTCTCGAACTC 12
V_DOBOX5_01_M01463 TRANSFAC - 48437143 48437159 4.0E-06 GATAGGGATTAGCTCAC 17
V_ZFP281_01_M01597 TRANSFAC + 48437199 48437209 9.0E-06 TGGGGGTTGGG 11
V_DMRT2_01_M01147 TRANSFAC + 48432601 48432616 9.0E-06 GAGAAGGTTCCTTTGT 16
V_SOX2_01_M02246 TRANSFAC + 48437106 48437120 8.0E-06 CCATTGTTCTGAGAA 15
V_ZFP281_04_M02831 TRANSFAC - 48437197 48437211 7.0E-06 TGCCCAACCCCCATC 15
V_POU6F1_03_M01479 TRANSFAC + 48428552 48428568 3.0E-06 CCACATAATGAGCAGTC 17
V_EWSR1FLI1_01_M02252 TRANSFAC + 48432617 48432634 3.0E-06 GGAAGGGATAAAGGCAGC 18
V_HNF1A_Q5_M02013 TRANSFAC + 48428761 48428771 3.0E-06 AGTTAATATTA 11
V_SMAD3_Q6_M00701 TRANSFAC - 48432234 48432242 6.0E-06 TGTCTGACT 9
V_SOX2_Q6_M01272 TRANSFAC + 48437102 48437117 2.0E-06 AGTCCCATTGTTCTGA 16
V_SRY_05_M02917 TRANSFAC - 48437103 48437119 8.0E-06 TCTCAGAACAATGGGAC 17
V_CTF1_01_M01196 TRANSFAC + 48432219 48432232 9.0E-06 TGGCTTCACGCCAG 14
V_ELF5_04_M02241 TRANSFAC - 48428694 48428702 9.0E-06 AACTTCCTT 9
V_NFYA_Q5_M02106 TRANSFAC + 48432803 48432816 0.0E+00 CAGCCAATCAGCAC 14
V_HOXD10_01_M01375 TRANSFAC - 48428762 48428778 5.0E-06 ATCTTAATAATATTAAC 17
V_TAACC_B_M00331 TRANSFAC - 48433479 48433501 3.0E-06 GAGAAAATAGCGAGACGGAAAGC 23
V_OBOX3_02_M03065 TRANSFAC - 48437144 48437160 2.0E-06 TGATAGGGATTAGCTCA 17
TLX1_NFIC_MA0119.1 JASPAR + 48432219 48432232 9.0E-06 TGGCTTCACGCCAG 14
V_OTX1_01_M01366 TRANSFAC - 48437143 48437159 9.0E-06 GATAGGGATTAGCTCAC 17
V_OBOX3_01_M01466 TRANSFAC - 48437144 48437160 2.0E-06 TGATAGGGATTAGCTCA 17
V_PAX4_04_M00380 TRANSFAC + 48432684 48432713 9.0E-06 AAAAGTCGACCCCATTTCCGGAAACACCCC 30
V_PAX6_01_M00097 TRANSFAC + 48432939 48432959 4.0E-06 GTTTTTTACGTTTTAATTTCC 21
V_NF1_Q6_M00193 TRANSFAC + 48428478 48428495 1.0E-06 TGTTGGCAAGAGGCCTTA 18
V_NANOG_02_M01247 TRANSFAC - 48437101 48437120 5.0E-06 TTCTCAGAACAATGGGACTA 20
V_OTX3_01_M01403 TRANSFAC - 48437144 48437160 8.0E-06 TGATAGGGATTAGCTCA 17
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL