Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RAG2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5897 recombination activating gene 2 chr11 - 36619329 - 36624829 36619829 Transcription Factor Binding Sites   Download all TFBS in the RAG2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Tp53_p53l_DBD_dimeric_18_1 SELEX - 36622943 36622960 2.0E-06 TCAAGTCACTTGTCATGT 18 SPIC_ETS_full_monomeric_14_1 SELEX + 36622870 36622883 1.0E-06 GAAAAGAGGAAGGA 14 SOX21_HMG_DBD_dimeric_13_2 SELEX - 36615818 36615830 5.0E-06 AAAATGCTATTCA 13 POU3F3_POU_DBD_monomeric_12_1 SELEX + 36622497 36622508 9.0E-06 TTACATAAATTG 12 SRY_HMG_DBD_dimeric_13_2 SELEX + 36615818 36615830 1.0E-06 TGAATAGCATTTT 13 POU3F2_POU_DBD_monomeric_13_1 SELEX + 36622496 36622508 5.0E-06 TTTACATAAATTG 13 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 36622966 36622983 2.0E-06 TTTATTTAAAGCAATTAG 18 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 36622968 36622982 8.0E-06 TATTTAAAGCAATTA 15 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX - 36616113 36616123 9.0E-06 ACAGACACATT 11 FOXL1_forkhead_full_dimeric_13_1 SELEX - 36622963 36622975 1.0E-06 TTTAAATAAAAAA 13 EWSR1-FLI1_MA0149.1 JASPAR + 36622869 36622886 2.0E-06 AGAAAAGAGGAAGGAAGA 18 SOX7_HMG_full_dimeric_17_2 SELEX - 36615816 36615832 5.0E-06 AAAAAATGCTATTCACA 17 STAT1_MA0137.2 JASPAR - 36615972 36615986 0.0E+00 CAATTCCCAGAAATC 15 SOX15_HMG_full_dimeric_15_3 SELEX + 36615817 36615831 1.0E-06 GTGAATAGCATTTTT 15 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 36622971 36622983 6.0E-06 TTAAAGCAATTAG 13 ZIC4_C2H2_DBD_monomeric_15_1 SELEX - 36621887 36621901 9.0E-06 CACCTCCTGCTGTGA 15 SPIB_ETS_DBD_monomeric_14_1 SELEX + 36622870 36622883 2.0E-06 GAAAAGAGGAAGGA 14 POU4F3_POU_DBD_monomeric_16_1 SELEX - 36622959 36622974 8.0E-06 TTAAATAAAAAATGTC 16 POU3F3_POU_DBD_monomeric_13_1 SELEX - 36622493 36622505 1.0E-05 TTTATGTAAACTT 13 SOX8_HMG_full_dimeric_13_1 SELEX + 36615979 36615991 5.0E-06 GGGAATTGTAGTC 13 Sox17_HMG_DBD_dimeric_15_2 SELEX + 36615817 36615831 4.0E-06 GTGAATAGCATTTTT 15 SOX2_HMG_full_dimeric_15_1 SELEX + 36615817 36615831 4.0E-06 GTGAATAGCATTTTT 15 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 36615999 36616012 3.0E-06 GTAAAGAGTCACCA 14 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 36622973 36622986 6.0E-06 AAAGCAATTAGTTA 14 ZIC3_C2H2_full_monomeric_15_1 SELEX - 36621887 36621901 2.0E-06 CACCTCCTGCTGTGA 15 PHOX2B_homeodomain_full_dimeric_11_1 SELEX + 36622972 36622982 7.0E-06 TAAAGCAATTA 11 SOX14_HMG_DBD_dimeric_15_1 SELEX + 36615817 36615831 2.0E-06 GTGAATAGCATTTTT 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 36622964 36622974 3.0E-06 TTAAATAAAAA 11 PRDM4_C2H2_full_monomeric_13_1 SELEX + 36615830 36615842 8.0E-06 TTTTAAGTCCTCC 13 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 36622971 36622983 7.0E-06 TTAAAGCAATTAG 13 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 36616110 36616117 1.0E-05 ACATTCCA 8 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 36622967 36622983 3.0E-06 TTATTTAAAGCAATTAG 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 36622967 36622983 8.0E-06 CTAATTGCTTTAAATAA 17 Tp53_p53l_DBD_dimeric_17_1 SELEX + 36615813 36615829 5.0E-06 ACATGTGAATAGCATTT 17 Sox3_HMG_DBD_dimeric_17_3 SELEX - 36615816 36615832 8.0E-06 AAAAAATGCTATTCACA 17 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 36622972 36622982 7.0E-06 TAAAGCAATTA 11 CPEB1_RRM_full_monomeric_8_1 SELEX - 36622964 36622971 4.0E-06 AATAAAAA 8 SPI1_ETS_full_monomeric_14_1 SELEX + 36622870 36622883 1.0E-06 GAAAAGAGGAAGGA 14 ETV6_ETS_full_dimeric_15_1 SELEX + 36622879 36622893 6.0E-06 AAGGAAGAGGAAATG 15 POU3F3_POU_DBD_dimeric_12_1 SELEX - 36622963 36622974 7.0E-06 TTAAATAAAAAA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 36622964 36622976 9.0E-06 CTTTAAATAAAAA 13 Sox1_HMG_DBD_dimeric_15_2 SELEX + 36615817 36615831 1.0E-06 GTGAATAGCATTTTT 15 POU4F1_POU_DBD_monomeric_14_1 SELEX - 36622961 36622974 4.0E-06 TTAAATAAAAAATG 14 ZIC1_C2H2_full_monomeric_14_1 SELEX - 36621888 36621901 4.0E-06 CACCTCCTGCTGTG 14 V_NFAT_Q4_01_M00935 TRANSFAC + 36615867 36615876 9.0E-06 GAGGAAAATC 10 V_SPI1_01_M01203 TRANSFAC + 36622870 36622886 5.0E-06 GAAAAGAGGAAGGAAGA 17 V_STAT5A_Q6_M01890 TRANSFAC + 36615971 36615983 1.0E-06 GGATTTCTGGGAA 13 V_STAT3_01_M00225 TRANSFAC + 36615969 36615989 8.0E-06 TAGGATTTCTGGGAATTGTAG 21 V_STAT3_01_M00225 TRANSFAC - 36615969 36615989 6.0E-06 CTACAATTCCCAGAAATCCTA 21 V_MSX3_01_M01341 TRANSFAC + 36622971 36622986 5.0E-06 TTAAAGCAATTAGTTA 16 V_BCL6_Q3_01_M02085 TRANSFAC - 36623061 36623070 9.0E-06 TTTTCAAGAA 10 V_EVI1_05_M00082 TRANSFAC + 36622786 36622796 1.0E-06 AAATAAGATAA 11 V_ATF5_01_M01295 TRANSFAC - 36622878 36622888 4.0E-06 CCTCTTCCTTC 11 V_BTEB3_Q5_M01865 TRANSFAC - 36615835 36615847 7.0E-06 GTGTGGGAGGACT 13 V_BCL6B_03_M02740 TRANSFAC + 36622776 36622791 2.0E-06 ATTTTTGAGGAAATAA 16 V_SREBP2_Q6_M01177 TRANSFAC + 36622991 36623002 8.0E-06 TGGCCACCTGAC 12 V_HMGIY_Q3_M01010 TRANSFAC + 36615821 36615835 1.0E-06 ATAGCATTTTTTTAA 15 V_HMGIY_Q3_M01010 TRANSFAC - 36623022 36623036 5.0E-06 CATGAAATTTTTTAG 15 V_HMGIY_Q3_M01010 TRANSFAC - 36623023 36623037 7.0E-06 TCATGAAATTTTTTA 15 V_DEAF1_02_M01002 TRANSFAC + 36616040 36616064 2.0E-06 CAAGAATCCGTTCTCTCTGGGATGT 25 V_FOXO4_02_M00476 TRANSFAC - 36623063 36623076 3.0E-06 ATTTTGTTTTCAAG 14 V_LMAF_Q2_M01139 TRANSFAC + 36621860 36621868 6.0E-06 GGTCAGCAG 9 V_HOXA13_02_M01297 TRANSFAC - 36622964 36622972 4.0E-06 AAATAAAAA 9 V_EBOX_Q6_01_M01034 TRANSFAC + 36622994 36623003 4.0E-06 CCACCTGACC 10 V_PROP1_01_M01294 TRANSFAC - 36622972 36622982 7.0E-06 TAATTGCTTTA 11 V_MEF2_02_M00231 TRANSFAC - 36622962 36622983 1.0E-06 CTAATTGCTTTAAATAAAAAAT 22 V_ISL2_01_M01328 TRANSFAC + 36622971 36622986 8.0E-06 TTAAAGCAATTAGTTA 16 V_NFAT3_Q3_M01734 TRANSFAC - 36616171 36616180 1.0E-05 TAGTTTTCCT 10 V_SOX11_04_M02899 TRANSFAC + 36622794 36622807 9.0E-06 TAAATTGTGTTGGA 14 V_HOXD1_01_M01448 TRANSFAC + 36622972 36622988 1.0E-06 TAAAGCAATTAGTTAGA 17 V_STAT5B_01_M00459 TRANSFAC + 36615972 36615986 0.0E+00 GATTTCTGGGAATTG 15 V_STAT5B_01_M00459 TRANSFAC - 36615972 36615986 2.0E-06 CAATTCCCAGAAATC 15 V_NERF_Q2_M00531 TRANSFAC + 36622896 36622913 7.0E-06 TAGAAGGAAGCAATTTAC 18 V_PU1_Q4_M01172 TRANSFAC - 36622871 36622889 0.0E+00 TCCTCTTCCTTCCTCTTTT 19 V_PU1_Q4_M01172 TRANSFAC - 36622881 36622899 3.0E-06 TCTATACATTTCCTCTTCC 19 V_K2B_01_M01348 TRANSFAC - 36622975 36622991 9.0E-06 ATATCTAACTAATTGCT 17 V_TCFAP2E_04_M02926 TRANSFAC - 36615825 36615838 2.0E-06 GACTTAAAAAAATG 14 V_PAX6_02_M01391 TRANSFAC - 36622971 36622986 9.0E-06 TAACTAATTGCTTTAA 16 V_MEF2A_Q6_M02024 TRANSFAC + 36622968 36622977 4.0E-06 TATTTAAAGC 10 V_ELF4_04_M02850 TRANSFAC - 36622959 36622975 5.0E-06 TTTAAATAAAAAATGTC 17 V_ELF4_04_M02850 TRANSFAC - 36622960 36622976 0.0E+00 CTTTAAATAAAAAATGT 17 V_DBP_Q6_01_M01872 TRANSFAC - 36622497 36622504 5.0E-06 TTATGTAA 8 V_DBX2_01_M01360 TRANSFAC + 36622971 36622986 9.0E-06 TTAAAGCAATTAGTTA 16 V_CEBPE_Q6_M01868 TRANSFAC + 36623025 36623038 3.0E-06 AAAAATTTCATGAT 14 V_LMX1_01_M01409 TRANSFAC - 36622962 36622978 3.0E-06 TGCTTTAAATAAAAAAT 17 V_ZFP105_03_M02827 TRANSFAC - 36622961 36622975 1.0E-06 TTTAAATAAAAAATG 15 V_FOXO1_02_M00474 TRANSFAC - 36623063 36623076 7.0E-06 ATTTTGTTTTCAAG 14 V_GFI1_01_M00250 TRANSFAC - 36623031 36623054 4.0E-06 CCACCTTAAATCAGAGATCATGAA 24 V_HOXA3_02_M01337 TRANSFAC + 36622971 36622984 6.0E-06 TTAAAGCAATTAGT 14 V_HIC1_03_M01073 TRANSFAC + 36616220 36616237 6.0E-06 CCGGGTTGCCGGAAGGCT 18 V_EVI1_01_M00078 TRANSFAC + 36622781 36622796 4.0E-06 TGAGGAAATAAGATAA 16 V_HNF3_Q6_M00791 TRANSFAC - 36622962 36622974 9.0E-06 TTAAATAAAAAAT 13 V_IRF_Q6_M00772 TRANSFAC - 36622852 36622866 4.0E-06 GTCAGTTTCAGTTGT 15 V_STAT5A_02_M00460 TRANSFAC - 36616091 36616114 7.0E-06 TTCCAGGAGTCCCCTCTCCCAGAG 24 V_MEF2_03_M00232 TRANSFAC - 36622962 36622983 0.0E+00 CTAATTGCTTTAAATAAAAAAT 22 V_NKX52_01_M01315 TRANSFAC + 36622901 36622917 4.0E-06 GGAAGCAATTTACAGTT 17 V_ELF5_01_M01197 TRANSFAC + 36622780 36622790 1.0E-05 TTGAGGAAATA 11 V_HBP1_03_M02762 TRANSFAC + 36622824 36622839 1.0E-06 TCGTTGAATGAATTCC 16 V_SOX12_04_M02900 TRANSFAC + 36622859 36622874 0.0E+00 AAACTGACAAAGAAAA 16 V_MEF2_04_M00233 TRANSFAC - 36622962 36622983 0.0E+00 CTAATTGCTTTAAATAAAAAAT 22 V_SPIB_01_M01204 TRANSFAC + 36622870 36622886 2.0E-06 GAAAAGAGGAAGGAAGA 17 V_ZIC3_05_M02941 TRANSFAC + 36621885 36621899 2.0E-06 CTTCACAGCAGGAGG 15 V_PNR_01_M01650 TRANSFAC - 36623035 36623048 3.0E-06 TAAATCAGAGATCA 14 V_ARID3A_04_M02735 TRANSFAC - 36622962 36622978 1.0E-06 TGCTTTAAATAAAAAAT 17 V_ISGF3G_03_M02771 TRANSFAC + 36622851 36622865 5.0E-06 CACAACTGAAACTGA 15 V_TBP_06_M02814 TRANSFAC + 36622960 36622975 6.0E-06 ACATTTTTTATTTAAA 16 V_TBP_06_M02814 TRANSFAC - 36622960 36622975 7.0E-06 TTTAAATAAAAAATGT 16 V_TBP_06_M02814 TRANSFAC + 36622964 36622979 9.0E-06 TTTTTATTTAAAGCAA 16 V_STAT3_03_M01595 TRANSFAC + 36615973 36615988 5.0E-06 ATTTCTGGGAATTGTA 16 V_OCT4_02_M01124 TRANSFAC + 36622797 36622811 6.0E-06 ATTGTGTTGGAAAGG 15 V_LIM1_01_M01418 TRANSFAC - 36622962 36622978 6.0E-06 TGCTTTAAATAAAAAAT 17 V_NEUROD_02_M01288 TRANSFAC - 36622518 36622529 1.0E-06 CTGCAGCTGTGT 12 V_ELF1_Q6_M00746 TRANSFAC + 36615863 36615874 9.0E-06 GAATGAGGAAAA 12 V_ELF1_Q6_M00746 TRANSFAC + 36616166 36616177 8.0E-06 AAAGGAGGAAAA 12 V_ELF1_Q6_M00746 TRANSFAC + 36622881 36622892 0.0E+00 GGAAGAGGAAAT 12 V_S8_01_M00099 TRANSFAC + 36622971 36622986 4.0E-06 TTAAAGCAATTAGTTA 16 V_ZIC2_05_M02940 TRANSFAC + 36621885 36621899 1.0E-06 CTTCACAGCAGGAGG 15 V_MTF1_06_M02882 TRANSFAC + 36622786 36622799 8.0E-06 AAATAAGATAAATT 14 V_MTF1_06_M02882 TRANSFAC - 36622959 36622972 8.0E-06 AAATAAAAAATGTC 14 V_BARHL1_01_M01332 TRANSFAC + 36622971 36622986 2.0E-06 TTAAAGCAATTAGTTA 16 V_DELTAEF1_01_M00073 TRANSFAC - 36623046 36623056 5.0E-06 ATCCACCTTAA 11 V_GFI1B_01_M01058 TRANSFAC - 36623037 36623048 7.0E-06 TAAATCAGAGAT 12 V_PXR_Q2_M00964 TRANSFAC + 36615885 36615896 4.0E-06 TAGGTCAGTAAA 12 V_MSX1_02_M01412 TRANSFAC + 36622971 36622986 6.0E-06 TTAAAGCAATTAGTTA 16 V_LMX1B_01_M01363 TRANSFAC + 36622962 36622978 5.0E-06 ATTTTTTATTTAAAGCA 17 V_BARX2_01_M01431 TRANSFAC - 36622971 36622986 1.0E-06 TAACTAATTGCTTTAA 16 V_BARX2_01_M01431 TRANSFAC + 36622973 36622988 1.0E-06 AAAGCAATTAGTTAGA 16 V_IRF1_Q6_01_M01881 TRANSFAC - 36622851 36622864 9.0E-06 CAGTTTCAGTTGTG 14 V_STAT5A_01_M00457 TRANSFAC + 36615972 36615986 1.0E-06 GATTTCTGGGAATTG 15 V_STAT5A_01_M00457 TRANSFAC - 36615972 36615986 1.0E-06 CAATTCCCAGAAATC 15 V_SRF_06_M02916 TRANSFAC - 36622960 36622976 0.0E+00 CTTTAAATAAAAAATGT 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 36622869 36622886 2.0E-06 AGAAAAGAGGAAGGAAGA 18 V_HOXD8_01_M01432 TRANSFAC - 36622957 36622973 9.0E-06 TAAATAAAAAATGTCAA 17 V_RFX3_05_M02892 TRANSFAC + 36616349 36616371 9.0E-06 GCGGTTACCTGGAGACCGCAGTC 23 V_HOXB3_01_M01330 TRANSFAC + 36622972 36622988 1.0E-06 TAAAGCAATTAGTTAGA 17 V_BSX_01_M01442 TRANSFAC + 36622973 36622988 9.0E-06 AAAGCAATTAGTTAGA 16 V_BARHL2_01_M01446 TRANSFAC + 36622971 36622986 1.0E-06 TTAAAGCAATTAGTTA 16 V_SOX15_04_M02903 TRANSFAC + 36615910 36615924 1.0E-05 TTTACTGCCATTCCA 15 V_LHX4_01_M01421 TRANSFAC + 36622972 36622988 3.0E-06 TAAAGCAATTAGTTAGA 17 V_LHX5_01_M01353 TRANSFAC - 36622962 36622978 1.0E-05 TGCTTTAAATAAAAAAT 17 V_HMX3_02_M01413 TRANSFAC + 36622901 36622917 7.0E-06 GGAAGCAATTTACAGTT 17 V_MAFK_04_M02880 TRANSFAC + 36623023 36623037 2.0E-06 TAAAAAATTTCATGA 15 V_SOX5_07_M02909 TRANSFAC + 36622791 36622807 5.0E-06 AGATAAATTGTGTTGGA 17 V_BARX1_01_M01340 TRANSFAC - 36622971 36622986 1.0E-06 TAACTAATTGCTTTAA 16 V_BARX1_01_M01340 TRANSFAC + 36622973 36622988 0.0E+00 AAAGCAATTAGTTAGA 16 V_GFI1_Q6_01_M02010 TRANSFAC + 36623039 36623048 7.0E-06 CTCTGATTTA 10 V_BRCA_01_M01082 TRANSFAC + 36616337 36616344 1.0E-05 TTCTGTTG 8 V_STAT1_05_M01260 TRANSFAC + 36615972 36615993 1.0E-06 GATTTCTGGGAATTGTAGTCCT 22 V_EVI1_03_M00080 TRANSFAC + 36622786 36622796 4.0E-06 AAATAAGATAA 11 V_ZIC1_05_M02939 TRANSFAC + 36621885 36621899 0.0E+00 CTTCACAGCAGGAGG 15 V_NANOG_02_M01247 TRANSFAC + 36622857 36622876 6.0E-06 TGAAACTGACAAAGAAAAGA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.