Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RAD51D Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5892 RAD51 paralog D chr17 - 33446388 - 33451888 33446888 Transcription Factor Binding Sites   Download all TFBS in the RAD51D promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 33445225 33445243 9.0E-06 TGCCCACTAGATGCCAGTA 19 CTCF_MA0139.1 JASPAR - 33446916 33446934 4.0E-06 CGGCCCGCAGATGGCGCTG 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 33445192 33445204 7.0E-06 GTAACCATCAAAA 13 PAX6_PAX_DBD_monomeric_19_1 SELEX + 33444030 33444048 6.0E-06 GTTCCCACTTGAGTGCGCC 19 GABPA_MA0062.2 JASPAR - 33446871 33446881 6.0E-06 CCGGAAGCGGC 11 SPIC_ETS_full_monomeric_14_1 SELEX + 33443093 33443106 5.0E-06 AAAAAAAGAAAGAA 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 33447236 33447247 1.0E-06 CGACAGGTGTCA 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 33444153 33444169 5.0E-06 AAAATCAAGTGAATACA 17 ELF4_ETS_full_monomeric_12_1 SELEX - 33446873 33446884 3.0E-06 AACCCGGAAGCG 12 EWSR1-FLI1_MA0149.1 JASPAR + 33443100 33443117 2.0E-06 GAAAGAAAGAAAGAAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 33443104 33443121 7.0E-06 GAAAGAAAGAAAGGCTAG 18 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 33447236 33447247 1.0E-06 CGACAGGTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 33447236 33447247 1.0E-06 CGACAGGTGTCA 12 GLIS1_C2H2_DBD_monomeric_16_1 SELEX - 33446681 33446696 7.0E-06 GGACCCCCCGCGAATG 16 Pax4_MA0068.1 JASPAR + 33445302 33445331 7.0E-06 AAATAATTACCTGTCCCTAAATATCAATAG 30 TEAD1_TEA_full_monomeric_10_1 SELEX + 33443070 33443079 3.0E-06 TACATTCCAA 10 TEAD1_TEA_full_monomeric_10_1 SELEX + 33443154 33443163 8.0E-06 TACATTCCTC 10 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 33447236 33447247 2.0E-06 CGACAGGTGTCA 12 ELF3_ETS_full_monomeric_13_1 SELEX - 33446872 33446884 8.0E-06 AACCCGGAAGCGG 13 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 33445299 33445313 6.0E-06 AACAAATAATTACCT 15 MYBL1_MYB_DBD_dimeric_17_1 SELEX + 33445187 33445203 9.0E-06 GACATTTTTGATGGTTA 17 MZF1_5-13_MA0057.1 JASPAR - 33444167 33444176 1.0E-05 GTAGGGGAAA 10 TBX15_TBX_DBD_dimeric_19_1 SELEX - 33446271 33446289 6.0E-06 GGGGGTAGAATTGACACCC 19 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 33443071 33443078 1.0E-05 ACATTCCA 8 ID4_bHLH_DBD_dimeric_10_1 SELEX - 33447237 33447246 6.0E-06 GACACCTGTC 10 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 33447236 33447247 2.0E-06 CGACAGGTGTCA 12 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 33444188 33444200 7.0E-06 TGCCCTTAAGGCC 13 EHF_ETS_full_monomeric_12_1 SELEX - 33446873 33446884 9.0E-06 AACCCGGAAGCG 12 ELF1_ETS_full_monomeric_12_1 SELEX - 33446873 33446884 2.0E-06 AACCCGGAAGCG 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 33447236 33447247 1.0E-06 CGACAGGTGTCA 12 ELF3_ETS_DBD_monomeric_12_1 SELEX - 33446873 33446884 6.0E-06 AACCCGGAAGCG 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 33447235 33447248 1.0E-06 ACGACAGGTGTCAA 14 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 33447235 33447248 5.0E-06 TTGACACCTGTCGT 14 GLIS3_C2H2_DBD_monomeric_14_1 SELEX - 33446682 33446695 5.0E-06 GACCCCCCGCGAAT 14 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 33443070 33443079 8.0E-06 TACATTCCAA 10 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 33446586 33446604 7.0E-06 ATCTCCTCGGTAAGGCCAG 19 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 33446586 33446604 7.0E-06 CTGGCCTTACCGAGGAGAT 19 ETV6_ETS_full_dimeric_15_1 SELEX - 33446867 33446881 6.0E-06 CCGGAAGCGGCAGCG 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 33445299 33445313 6.0E-06 AACAAATAATTACCT 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 33443086 33443098 7.0E-06 ACAAAAAAAAAAA 13 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 33447236 33447247 3.0E-06 CGACAGGTGTCA 12 RREB1_MA0073.1 JASPAR + 33447047 33447066 1.0E-05 CCGCAACACACACACCGACC 20 GLIS2_C2H2_DBD_monomeric_14_1 SELEX - 33446682 33446695 1.0E-06 GACCCCCCGCGAAT 14 TEAD1_MA0090.1 JASPAR + 33443154 33443165 2.0E-06 TACATTCCTCCT 12 V_MEQ_01_M02049 TRANSFAC + 33447051 33447059 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC - 33443087 33443106 4.0E-06 TTCTTTCTTTTTTTTTTTTG 20 V_FOXP1_01_M00987 TRANSFAC - 33443091 33443110 4.0E-06 TTCTTTCTTTCTTTTTTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 33447220 33447232 8.0E-06 ATCATTACAGATT 13 V_TCF3_01_M01594 TRANSFAC - 33443089 33443101 7.0E-06 TCTTTTTTTTTTT 13 V_TCF3_01_M01594 TRANSFAC - 33443093 33443105 1.0E-06 TCTTTCTTTTTTT 13 V_EBF_Q6_M00977 TRANSFAC - 33445159 33445169 4.0E-06 GTCCCCTGGGA 11 V_BACH2_01_M00490 TRANSFAC + 33443044 33443054 8.0E-06 GGTGAGTCAGC 11 V_BACH2_01_M00490 TRANSFAC + 33443128 33443138 8.0E-06 GGTGAGTCAGC 11 V_SIX6_02_M01398 TRANSFAC + 33446267 33446283 1.0E-06 AATGGGGTGTCAATTCT 17 V_DLX3_01_M01400 TRANSFAC + 33445299 33445315 7.0E-06 AACAAATAATTACCTGT 17 V_EVI1_04_M00081 TRANSFAC + 33443089 33443103 3.0E-06 AAAAAAAAAAAGAAA 15 V_BCL6_01_M01183 TRANSFAC - 33443088 33443103 0.0E+00 TTTCTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 33443089 33443104 6.0E-06 CTTTCTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 33443092 33443107 3.0E-06 TTTCTTTCTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 33443109 33443124 7.0E-06 TTTCTAGCCTTTCTTT 16 V_ZFP740_04_M02938 TRANSFAC - 33446682 33446698 2.0E-06 GAGGACCCCCCGCGAAT 17 V_IRF_Q6_01_M00972 TRANSFAC + 33443094 33443104 5.0E-06 AAAAAAGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 33443092 33443107 1.0E-06 AAAAAAAAGAAAGAAA 16 V_CEBP_C_M00201 TRANSFAC - 33444201 33444218 9.0E-06 CGAATGAGGCAAGGCCCC 18 V_HOXA4_01_M01370 TRANSFAC + 33445299 33445315 1.0E-05 AACAAATAATTACCTGT 17 V_HOXD1_01_M01448 TRANSFAC - 33445299 33445315 6.0E-06 ACAGGTAATTATTTGTT 17 V_HOXD1_01_M01448 TRANSFAC + 33445300 33445316 6.0E-06 ACAAATAATTACCTGTC 17 V_NKX61_03_M01489 TRANSFAC + 33445299 33445315 1.0E-06 AACAAATAATTACCTGT 17 V_E2A_Q2_M00804 TRANSFAC - 33447232 33447245 7.0E-06 ACACCTGTCGTATA 14 V_EVX1_01_M01475 TRANSFAC + 33445300 33445316 6.0E-06 ACAAATAATTACCTGTC 17 V_TCFAP2E_04_M02926 TRANSFAC + 33443085 33443098 1.0E-06 GACAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 33443086 33443099 7.0E-06 ACAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 33443087 33443100 9.0E-06 CAAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC + 33443088 33443101 6.0E-06 AAAAAAAAAAAAGA 14 V_DLX5_01_M01388 TRANSFAC - 33445299 33445314 2.0E-06 CAGGTAATTATTTGTT 16 V_NKX62_Q2_M00489 TRANSFAC + 33445301 33445312 8.0E-06 CAAATAATTACC 12 V_TGIF2_01_M01407 TRANSFAC - 33445105 33445120 1.0E-05 CACAAGCTGTCAGTAT 16 V_EVX2_01_M01386 TRANSFAC + 33445299 33445315 8.0E-06 AACAAATAATTACCTGT 17 V_EVX2_01_M01386 TRANSFAC - 33445300 33445316 3.0E-06 GACAGGTAATTATTTGT 17 V_ELF4_04_M02850 TRANSFAC + 33443085 33443101 4.0E-06 GACAAAAAAAAAAAAGA 17 V_GC_01_M00255 TRANSFAC - 33446704 33446717 6.0E-06 TAGGGGAGGGGCGT 14 V_HOXA6_01_M01392 TRANSFAC - 33445299 33445314 9.0E-06 CAGGTAATTATTTGTT 16 V_HOXA6_01_M01392 TRANSFAC + 33445301 33445316 8.0E-06 CAAATAATTACCTGTC 16 V_TGIF_02_M01346 TRANSFAC + 33445104 33445120 3.0E-06 GATACTGACAGCTTGTG 17 V_SPI1_03_M02078 TRANSFAC - 33443183 33443192 1.0E-05 AGAGGAACTG 10 V_ZFP105_03_M02827 TRANSFAC + 33443085 33443099 0.0E+00 GACAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 33443086 33443100 2.0E-06 ACAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 33443087 33443101 4.0E-06 CAAAAAAAAAAAAGA 15 V_ZFP105_03_M02827 TRANSFAC + 33443088 33443102 0.0E+00 AAAAAAAAAAAAGAA 15 V_SIX1_01_M01313 TRANSFAC + 33446267 33446283 4.0E-06 AATGGGGTGTCAATTCT 17 V_E12_Q6_M00693 TRANSFAC + 33447237 33447247 6.0E-06 GACAGGTGTCA 11 V_DOBOX4_01_M01359 TRANSFAC - 33446267 33446283 4.0E-06 AGAATTGACACCCCATT 17 V_SIX3_01_M01358 TRANSFAC + 33446267 33446283 2.0E-06 AATGGGGTGTCAATTCT 17 V_MAZ_Q6_01_M02023 TRANSFAC - 33446956 33446969 3.0E-06 GGCGGTGGAGAGGG 14 V_AP2BETA_Q3_M01858 TRANSFAC - 33446636 33446651 2.0E-06 GTTCCGGCCTGCGGGG 16 V_AP2BETA_Q3_M01858 TRANSFAC + 33446788 33446803 9.0E-06 GGGTAGGGCTGGGGGT 16 V_IRF_Q6_M00772 TRANSFAC - 33443094 33443108 2.0E-06 CTTTCTTTCTTTTTT 15 V_NKX25_Q5_M01043 TRANSFAC + 33444032 33444041 3.0E-06 TCCCACTTGA 10 V_SP1SP3_Q4_M01219 TRANSFAC - 33446771 33446781 5.0E-06 CCGCCTCCTCC 11 V_SOX12_04_M02900 TRANSFAC + 33447187 33447202 3.0E-06 AGACAGACAATGAAAA 16 V_TEF_01_M01305 TRANSFAC + 33443154 33443165 2.0E-06 TACATTCCTCCT 12 V_HB24_01_M01399 TRANSFAC + 33445298 33445312 9.0E-06 CAACAAATAATTACC 15 V_MAFK_Q3_M02022 TRANSFAC + 33443046 33443056 3.0E-06 TGAGTCAGCTT 11 V_MAFK_Q3_M02022 TRANSFAC + 33443130 33443140 3.0E-06 TGAGTCAGCTT 11 V_AP1_01_M00517 TRANSFAC + 33443043 33443055 9.0E-06 TGGTGAGTCAGCT 13 V_AP1_01_M00517 TRANSFAC + 33443127 33443139 9.0E-06 TGGTGAGTCAGCT 13 V_TGIF1_01_M03111 TRANSFAC + 33445104 33445120 3.0E-06 GATACTGACAGCTTGTG 17 V_CTCF_01_M01200 TRANSFAC - 33446916 33446935 3.0E-06 GCGGCCCGCAGATGGCGCTG 20 V_NKX63_01_M01470 TRANSFAC + 33445299 33445315 2.0E-06 AACAAATAATTACCTGT 17 V_SIX2_01_M01433 TRANSFAC + 33446267 33446283 1.0E-06 AATGGGGTGTCAATTCT 17 V_MYOD_01_M00001 TRANSFAC + 33447236 33447247 8.0E-06 CGACAGGTGTCA 12 V_GFI1_Q6_M01067 TRANSFAC + 33447211 33447223 9.0E-06 AGAAATCACATCA 13 V_RARA_04_M02891 TRANSFAC - 33443971 33443986 7.0E-06 GGAGTGGGGTCAGGAA 16 V_MTF1_06_M02882 TRANSFAC + 33443086 33443099 4.0E-06 ACAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 33443088 33443101 3.0E-06 AAAAAAAAAAAAGA 14 V_MTF1_06_M02882 TRANSFAC + 33443090 33443103 9.0E-06 AAAAAAAAAAGAAA 14 V_MTF1_06_M02882 TRANSFAC + 33443094 33443107 3.0E-06 AAAAAAGAAAGAAA 14 V_FAC1_01_M00456 TRANSFAC + 33443086 33443099 6.0E-06 ACAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 33443089 33443102 8.0E-06 AAAAAAAAAAAGAA 14 V_HOXB8_01_M01451 TRANSFAC - 33445300 33445315 3.0E-06 ACAGGTAATTATTTGT 16 V_HDX_01_M01333 TRANSFAC + 33447207 33447223 7.0E-06 TCGCAGAAATCACATCA 17 V_TEF1_Q6_03_M01817 TRANSFAC - 33443155 33443163 3.0E-06 GAGGAATGT 9 V_NKX61_02_M01469 TRANSFAC + 33445299 33445314 1.0E-06 AACAAATAATTACCTG 16 V_IPF1_01_M01233 TRANSFAC + 33445302 33445311 1.0E-05 AAATAATTAC 10 V_BARX2_01_M01431 TRANSFAC - 33445299 33445314 2.0E-06 CAGGTAATTATTTGTT 16 V_R_01_M00273 TRANSFAC - 33444310 33444330 7.0E-06 GGGTTCATGCAGTGTGGTGCT 21 V_TITF1_Q3_M00432 TRANSFAC - 33444034 33444043 4.0E-06 ACTCAAGTGG 10 V_IRF1_Q6_01_M01881 TRANSFAC - 33443093 33443106 6.0E-06 TTCTTTCTTTTTTT 14 V_SRF_06_M02916 TRANSFAC + 33443083 33443099 5.0E-06 CCGACAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 33443084 33443100 2.0E-06 CGACAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 33443085 33443101 1.0E-06 GACAAAAAAAAAAAAGA 17 V_SRF_06_M02916 TRANSFAC + 33443086 33443102 0.0E+00 ACAAAAAAAAAAAAGAA 17 V_SRF_06_M02916 TRANSFAC + 33443087 33443103 0.0E+00 CAAAAAAAAAAAAGAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 33443100 33443117 2.0E-06 GAAAGAAAGAAAGAAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 33443104 33443121 7.0E-06 GAAAGAAAGAAAGGCTAG 18 V_SIX6_01_M01345 TRANSFAC + 33446267 33446283 4.0E-06 AATGGGGTGTCAATTCT 17 V_HOXD8_01_M01432 TRANSFAC - 33445298 33445314 5.0E-06 CAGGTAATTATTTGTTG 17 V_HOXB3_01_M01330 TRANSFAC - 33445299 33445315 9.0E-06 ACAGGTAATTATTTGTT 17 V_NFE2_01_M00037 TRANSFAC - 33443045 33443055 3.0E-06 AGCTGACTCAC 11 V_NFE2_01_M00037 TRANSFAC - 33443129 33443139 3.0E-06 AGCTGACTCAC 11 V_PAX4_02_M00377 TRANSFAC + 33445302 33445312 0.0E+00 AAATAATTACC 11 V_BSX_01_M01442 TRANSFAC - 33445299 33445314 6.0E-06 CAGGTAATTATTTGTT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 33446706 33446719 1.0E-06 GGTAGGGGAGGGGC 14 V_BARX1_01_M01340 TRANSFAC - 33445299 33445314 4.0E-06 CAGGTAATTATTTGTT 16 V_GFI1_Q6_01_M02010 TRANSFAC - 33447212 33447221 7.0E-06 ATGTGATTTC 10 V_TCF3_05_M02920 TRANSFAC + 33443084 33443098 4.0E-06 CGACAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 33443085 33443099 1.0E-05 GACAAAAAAAAAAAA 15 V_DMRT1_01_M01146 TRANSFAC + 33445183 33445197 8.0E-06 AGGAGACATTTTTGA 15 V_SMAD1_01_M01590 TRANSFAC + 33443095 33443106 2.0E-06 AAAAAGAAAGAA 12 V_NANOG_02_M01247 TRANSFAC + 33443086 33443105 8.0E-06 ACAAAAAAAAAAAAGAAAGA 20 V_NANOG_02_M01247 TRANSFAC + 33443091 33443110 0.0E+00 AAAAAAAAAGAAAGAAAGAA 20 V_NANOG_02_M01247 TRANSFAC + 33443095 33443114 1.0E-06 AAAAAGAAAGAAAGAAAGAA 20 V_IPF1_06_M01438 TRANSFAC - 33445299 33445314 3.0E-06 CAGGTAATTATTTGTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.