Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

BBS4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 585 Bardet-Biedl syndrome 4 chr15 + 72973519 - 72979019 72978519 Transcription Factor Binding Sites   Download all TFBS in the BBS4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 72978937 72978945 8.0E-06 GTTAATCCC 9 PITX1_homeodomain_full_monomeric_8_1 SELEX + 72978938 72978945 1.0E-05 TTAATCCC 8 SP4_C2H2_full_monomeric_17_1 SELEX - 72978708 72978724 6.0E-06 GTCGCCCCGCCCACCCT 17 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX + 72978504 72978520 7.0E-06 TTCCGCTTGCCTCGTCG 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 72978711 72978721 1.0E-05 GCCCCGCCCAC 11 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 72978938 72978945 1.0E-05 TTAATCCC 8 Stat3_MA0144.1 JASPAR + 72978965 72978974 1.0E-05 TGCCTGGAAG 10 DUXA_homeodomain_DBD_dimeric_13_1 SELEX - 72979027 72979039 2.0E-06 TAAACTTAATCAC 13 ETV6_ETS_full_dimeric_15_1 SELEX - 72978501 72978515 9.0E-06 AGGCAAGCGGAAGTC 15 ELF5_MA0136.1 JASPAR + 72978459 72978467 4.0E-06 TACTTCCTT 9 V_BCL6_01_M01183 TRANSFAC + 72979250 72979265 1.0E-06 TTTGTTAGAATGATTT 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 72978844 72978855 3.0E-06 ACTTTTCACCAG 12 V_YY1_Q6_M00793 TRANSFAC + 72978875 72978883 7.0E-06 GCCATCTTT 9 V_GKLF_02_M01588 TRANSFAC - 72978710 72978721 8.0E-06 GCCCCGCCCACC 12 V_REX1_01_M01695 TRANSFAC - 72978567 72978576 7.0E-06 TCAGCCATTT 10 V_BCL6_02_M01185 TRANSFAC - 72979034 72979047 3.0E-06 TACTTTCCTAAACT 14 V_PITX1_Q6_M01826 TRANSFAC + 72978417 72978427 4.0E-06 GACCCTAATCC 11 V_PAX9_B_M00329 TRANSFAC + 72978679 72978702 1.0E-05 GAGAGGCGGAGCTGGGTGCCGAGC 24 V_SP1_Q6_M00196 TRANSFAC + 72978710 72978722 5.0E-06 GGTGGGCGGGGCG 13 V_BCL6_Q3_M01171 TRANSFAC + 72978795 72978804 8.0E-06 TGTTCTAGGA 10 V_YY1_Q6_02_M01035 TRANSFAC - 72978566 72978576 5.0E-06 TCAGCCATTTT 11 V_REX1_03_M01744 TRANSFAC + 72978566 72978577 4.0E-06 AAAATGGCTGAG 12 V_SPIB_01_M01204 TRANSFAC - 72978926 72978942 9.0E-06 ATTAACAGGAACTGTCT 17 V_SMAD4_Q6_M00733 TRANSFAC - 72978269 72978283 3.0E-06 GTAGGCCAGCCACCT 15 V_SP4_Q5_M01273 TRANSFAC - 72978711 72978721 9.0E-06 GCCCCGCCCAC 11 V_PITX1_01_M01484 TRANSFAC - 72978934 72978950 6.0E-06 TTCACGGGATTAACAGG 17 V_AIRE_01_M00999 TRANSFAC + 72979031 72979056 6.0E-06 TTAAGTTTAGGAAAGTACGGTTTTGG 26 V_DMRT7_01_M01151 TRANSFAC + 72979251 72979264 5.0E-06 TTGTTAGAATGATT 14 V_SOX18_04_M02905 TRANSFAC + 72978202 72978217 9.0E-06 GGACTGAATTAAATGC 16 V_ELF5_04_M02241 TRANSFAC + 72978459 72978467 4.0E-06 TACTTCCTT 9 V_TCFAP2E_03_M02822 TRANSFAC + 72978755 72978769 1.0E-05 GTCGCCTGGGGCAAG 15 V_SP1_Q4_01_M00932 TRANSFAC + 72978710 72978722 5.0E-06 GGTGGGCGGGGCG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.