Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PEX19 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5824 peroxisomal biogenesis factor 19 chr1 - 160254441 - 160259941 160254941 Transcription Factor Binding Sites   Download all TFBS in the PEX19 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX21_HMG_DBD_dimeric_15_1 SELEX + 160255007 160255021 0.0E+00 ACCAATGGTATTGTT 15 SOX21_HMG_DBD_dimeric_15_1 SELEX - 160255007 160255021 3.0E-06 AACAATACCATTGGT 15 SOX4_HMG_DBD_dimeric_16_1 SELEX - 160255007 160255022 8.0E-06 CAACAATACCATTGGT 16 SRY_HMG_DBD_dimeric_15_1 SELEX + 160255007 160255021 1.0E-06 ACCAATGGTATTGTT 15 SRY_HMG_DBD_dimeric_15_1 SELEX - 160255007 160255021 0.0E+00 AACAATACCATTGGT 15 SOX2_HMG_full_dimeric_17_1 SELEX + 160255006 160255022 4.0E-06 AACCAATGGTATTGTTG 17 SOX2_HMG_full_dimeric_17_1 SELEX - 160255006 160255022 0.0E+00 CAACAATACCATTGGTT 17 YY1_C2H2_full_monomeric_11_1 SELEX + 160255034 160255044 3.0E-06 ACCGCCATTTT 11 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 160254821 160254832 6.0E-06 GCCTTTCCCACT 12 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 160254233 160254243 6.0E-06 TAAGAAAACAT 11 SOX8_HMG_full_dimeric_15_1 SELEX + 160255007 160255021 6.0E-06 ACCAATGGTATTGTT 15 SOX8_HMG_full_dimeric_17_1 SELEX + 160255006 160255022 2.0E-06 AACCAATGGTATTGTTG 17 Sox17_HMG_DBD_dimeric_15_1 SELEX + 160255007 160255021 1.0E-06 ACCAATGGTATTGTT 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 160255007 160255021 0.0E+00 AACAATACCATTGGT 15 Sox1_HMG_DBD_dimeric_13_1 SELEX - 160255008 160255020 1.0E-06 ACAATACCATTGG 13 Pax4_MA0068.1 JASPAR - 160255060 160255089 5.0E-06 GAAAAATACCCAAAACACAAACACTCAAAG 30 LEF1_HMG_DBD_monomeric_15_1 SELEX + 160254338 160254352 6.0E-06 CAAGATGAAAGAACT 15 HOXA5_MA0158.1 JASPAR + 160254027 160254034 7.0E-06 CACTAATT 8 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 160256094 160256105 6.0E-06 TTTCTCCACACA 12 SOX14_HMG_DBD_dimeric_13_1 SELEX - 160255008 160255020 1.0E-06 ACAATACCATTGG 13 HEY1_bHLH_DBD_dimeric_10_1 SELEX + 160254803 160254812 8.0E-06 CACACGTGCC 10 SOX18_HMG_full_dimeric_15_1 SELEX + 160255007 160255021 1.0E-06 ACCAATGGTATTGTT 15 SOX18_HMG_full_dimeric_15_1 SELEX - 160255007 160255021 0.0E+00 AACAATACCATTGGT 15 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 160254451 160254467 2.0E-06 AGCTTGCTAGGAGTTAA 17 SOX15_HMG_full_dimeric_15_1 SELEX - 160255007 160255021 0.0E+00 AACAATACCATTGGT 15 YY2_C2H2_full_monomeric_11_1 SELEX + 160255034 160255044 0.0E+00 ACCGCCATTTT 11 SOX7_HMG_full_dimeric_17_1 SELEX + 160255006 160255022 0.0E+00 AACCAATGGTATTGTTG 17 SOX7_HMG_full_dimeric_17_1 SELEX - 160255006 160255022 1.0E-06 CAACAATACCATTGGTT 17 SOX14_HMG_DBD_dimeric_12_1 SELEX - 160255009 160255020 0.0E+00 ACAATACCATTG 12 Myf_MA0055.1 JASPAR - 160254517 160254528 4.0E-06 CAGCAGCAGCAG 12 Sox11_HMG_DBD_dimeric_15_1 SELEX + 160255007 160255021 9.0E-06 ACCAATGGTATTGTT 15 Sox11_HMG_DBD_dimeric_15_1 SELEX - 160255007 160255021 3.0E-06 AACAATACCATTGGT 15 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 160254545 160254560 2.0E-06 GAGTTCTTAAAGTTCG 16 SRY_HMG_DBD_dimeric_13_1 SELEX - 160255008 160255020 7.0E-06 ACAATACCATTGG 13 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 160256094 160256105 4.0E-06 TTTCTCCACACA 12 Sox3_HMG_DBD_dimeric_17_1 SELEX + 160255006 160255022 0.0E+00 AACCAATGGTATTGTTG 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 160255006 160255022 0.0E+00 CAACAATACCATTGGTT 17 Sox1_HMG_DBD_dimeric_15_1 SELEX + 160255007 160255021 3.0E-06 ACCAATGGTATTGTT 15 Sox1_HMG_DBD_dimeric_15_1 SELEX - 160255007 160255021 0.0E+00 AACAATACCATTGGT 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 160255067 160255079 6.0E-06 CAAAACACAAACA 13 NFIA_NFI_full_monomeric_10_1 SELEX - 160254044 160254053 2.0E-06 AGTGCCAAGT 10 RREB1_MA0073.1 JASPAR - 160255063 160255082 0.0E+00 ACCCAAAACACAAACACTCA 20 SOX9_HMG_full_dimeric_17_1 SELEX + 160255006 160255022 1.0E-06 AACCAATGGTATTGTTG 17 V_FOXP1_01_M00987 TRANSFAC + 160255066 160255085 1.0E-05 GTGTTTGTGTTTTGGGTATT 20 V_HNF3B_01_M00131 TRANSFAC - 160254233 160254247 8.0E-06 GGGGATGTTTTCTTA 15 V_ATF5_01_M01295 TRANSFAC - 160254413 160254423 5.0E-06 TGTCTTCCTTA 11 V_YY1_02_M00069 TRANSFAC + 160254905 160254924 1.0E-06 CGGCGGCCATCTTGCTACCT 20 V_NFY_Q6_M00185 TRANSFAC + 160255005 160255015 7.0E-06 TAACCAATGGT 11 V_SIX6_02_M01398 TRANSFAC + 160254581 160254597 6.0E-06 GAAGAGGTATCATGAAA 17 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 160252850 160252861 3.0E-06 ACTATTCGACAG 12 V_NFMUE1_Q6_M00651 TRANSFAC + 160254908 160254916 6.0E-06 CGGCCATCT 9 V_IRF_Q6_01_M00972 TRANSFAC - 160255085 160255095 9.0E-06 AAAAGGGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 160255082 160255097 1.0E-05 AGAAAAGGGAAAAATA 16 V_NFAT3_Q3_M01734 TRANSFAC + 160255205 160255214 6.0E-06 ATTTTTTCCT 10 V_YY1_Q6_M00793 TRANSFAC + 160254910 160254918 7.0E-06 GCCATCTTG 9 V_EAR2_Q2_M01728 TRANSFAC + 160254119 160254132 6.0E-06 TCACCTCTGCCCTG 14 V_NKX61_03_M01489 TRANSFAC - 160255195 160255211 6.0E-06 AAAAAATAATGAAAGAG 17 V_VAX2_01_M01327 TRANSFAC + 160254024 160254039 7.0E-06 GTACACTAATTTACAC 16 V_GM497_04_M02864 TRANSFAC + 160254427 160254442 9.0E-06 CGAGGCACACAAGGAC 16 V_TCFAP2E_04_M02926 TRANSFAC - 160255204 160255217 2.0E-06 CTCAGGAAAAAATA 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 160254005 160254022 9.0E-06 CTGATCTCTGCAGATAAC 18 V_PPARGRXRA_01_M02262 TRANSFAC - 160254119 160254133 5.0E-06 TCAGGGCAGAGGTGA 15 V_NFY_C_M00209 TRANSFAC - 160254468 160254481 5.0E-06 ACTGATTGCTTACA 14 V_HELIOSA_02_M01004 TRANSFAC + 160253833 160253843 1.0E-05 AAAAGGAATAA 11 V_IPF1_Q4_M00436 TRANSFAC + 160254461 160254472 1.0E-05 GAGTTAATGTAA 12 V_MYF_01_M01302 TRANSFAC - 160254517 160254528 4.0E-06 CAGCAGCAGCAG 12 V_SIX1_01_M01313 TRANSFAC + 160254581 160254597 1.0E-06 GAAGAGGTATCATGAAA 17 V_SIX3_01_M01358 TRANSFAC + 160254581 160254597 5.0E-06 GAAGAGGTATCATGAAA 17 V_EVI1_01_M00078 TRANSFAC + 160254335 160254350 6.0E-06 TGACAAGATGAAAGAA 16 V_TATA_C_M00216 TRANSFAC - 160255041 160255050 6.0E-06 CCTTTAAAAA 10 V_NKX52_01_M01315 TRANSFAC - 160255057 160255073 6.0E-06 ACAAACACTCAAAGCTT 17 V_YY1_Q6_02_M01035 TRANSFAC + 160255034 160255044 1.0E-06 ACCGCCATTTT 11 V_REX1_03_M01744 TRANSFAC - 160255033 160255044 9.0E-06 AAAATGGCGGTT 12 Tal1_Gata1_MA0140.1 JASPAR + 160254005 160254022 9.0E-06 CTGATCTCTGCAGATAAC 18 V_PPARG_03_M00528 TRANSFAC - 160254119 160254135 5.0E-06 TTTCAGGGCAGAGGTGA 17 V_RREB1_01_M00257 TRANSFAC - 160255069 160255082 4.0E-06 ACCCAAAACACAAA 14 V_HOXA5_03_M02271 TRANSFAC + 160254027 160254034 7.0E-06 CACTAATT 8 V_CDC5_01_M00478 TRANSFAC + 160254461 160254472 1.0E-06 GAGTTAATGTAA 12 V_NKX63_01_M01470 TRANSFAC - 160255195 160255211 6.0E-06 AAAAAATAATGAAAGAG 17 V_SIX2_01_M01433 TRANSFAC + 160254581 160254597 2.0E-06 GAAGAGGTATCATGAAA 17 V_BLIMP1_Q6_M01066 TRANSFAC - 160254859 160254874 6.0E-06 CGGACAGGGAATTGGA 16 V_YY1_03_M02044 TRANSFAC + 160254907 160254918 3.0E-06 GCGGCCATCTTG 12 V_YY1_03_M02044 TRANSFAC + 160255034 160255045 2.0E-06 ACCGCCATTTTT 12 V_CIZ_01_M00734 TRANSFAC - 160255204 160255212 3.0E-06 GAAAAAATA 9 V_FAC1_01_M00456 TRANSFAC - 160255069 160255082 0.0E+00 ACCCAAAACACAAA 14 V_TAL1_01_M01591 TRANSFAC + 160255087 160255099 1.0E-05 TTCCCTTTTCTCC 13 V_TAL1_01_M01591 TRANSFAC + 160256088 160256100 7.0E-06 TCTCCTTTTCTCC 13 V_FOXL1_04_M02753 TRANSFAC + 160254464 160254480 2.0E-06 TTAATGTAAGCAATCAG 17 V_LUN1_01_M00480 TRANSFAC - 160255175 160255191 1.0E-06 CGCCAGGTAATTTGGGA 17 V_ZSCAN4_04_M02942 TRANSFAC + 160254427 160254442 4.0E-06 CGAGGCACACAAGGAC 16 V_SIX4_01_M01374 TRANSFAC - 160254581 160254597 7.0E-06 TTTCATGATACCTCTTC 17 V_HSF_Q6_M00641 TRANSFAC + 160254846 160254858 4.0E-06 TTCCAGAAGCTCC 13 V_FOXJ2_01_M00422 TRANSFAC - 160255062 160255079 2.0E-06 CAAAACACAAACACTCAA 18 V_SIX6_01_M01345 TRANSFAC + 160254581 160254597 3.0E-06 GAAGAGGTATCATGAAA 17 V_EFC_Q6_M00626 TRANSFAC + 160255180 160255193 8.0E-06 AATTACCTGGCGAA 14 V_YY1_01_M00059 TRANSFAC + 160255033 160255049 3.0E-06 AACCGCCATTTTTAAAG 17 V_HMX3_02_M01413 TRANSFAC + 160254103 160254119 9.0E-06 GCAAGCGATTACAAATT 17 V_STAT1_Q6_M01823 TRANSFAC - 160256075 160256084 8.0E-06 TTCAGGGAAA 10 V_AR_Q2_M00447 TRANSFAC - 160256081 160256095 1.0E-05 AAAGGAGATTGTTCA 15 PPARG_RXRA_MA0065.2 JASPAR - 160254119 160254133 5.0E-06 TCAGGGCAGAGGTGA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.