Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PTPRO Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5800 protein tyrosine phosphatase, receptor type, O chr12 + 15470190 - 15475690 15475190 Transcription Factor Binding Sites   Download all TFBS in the PTPRO promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ESR2_MA0258.1 JASPAR - 15475826 15475843 8.0E-06 CTGGGCCATCGTGCCCTG 18 IRX2_homeodomain_DBD_dimeric_12_1 SELEX + 15474138 15474149 1.0E-06 TTACATGACAAT 12 POU2F2_POU_DBD_monomeric_11_1 SELEX - 15474135 15474145 8.0E-06 TCATGTAAATT 11 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 15475821 15475832 4.0E-06 CGCCCCAGGGCA 12 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 15475268 15475277 5.0E-06 CCCATAAAAT 10 FOXI1_MA0042.1 JASPAR - 15473906 15473917 3.0E-06 TGTTGTTTGTAT 12 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 15473940 15473956 9.0E-06 TTTGCTGCATGAGCAAT 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 15473941 15473955 9.0E-06 TTGCTCATGCAGCAA 15 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 15475268 15475277 1.0E-05 CCCATAAAAT 10 POU3F1_POU_DBD_monomeric_12_1 SELEX - 15474134 15474145 4.0E-06 TCATGTAAATTA 12 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 15475269 15475277 2.0E-06 CCCATAAAA 9 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 15475821 15475832 2.0E-06 CGCCCCAGGGCA 12 Pou5f1_MA0142.1 JASPAR - 15474136 15474150 0.0E+00 TATTGTCATGTAAAT 15 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 15475268 15475277 8.0E-06 CCCATAAAAT 10 TP53_MA0106.1 JASPAR - 15474074 15474093 1.0E-06 TGAGACATGCTTGGGCAACA 20 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 15475821 15475832 5.0E-06 CGCCCCAGGGCA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 15474134 15474145 5.0E-06 TCATGTAAATTA 12 Sox2_MA0143.1 JASPAR - 15474137 15474151 0.0E+00 TTATTGTCATGTAAA 15 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 15475821 15475832 5.0E-06 CGCCCCAGGGCA 12 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 15474138 15474149 0.0E+00 TTACATGACAAT 12 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 15475268 15475277 4.0E-06 CCCATAAAAT 10 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 15474138 15474149 1.0E-06 TTACATGACAAT 12 V_FOXP1_01_M00987 TRANSFAC - 15473902 15473921 7.0E-06 TGGTTGTTGTTTGTATGTGT 20 V_FREAC7_01_M00293 TRANSFAC + 15474092 15474107 1.0E-05 CAGGTATAAATAAGTT 16 V_PAX4_03_M00378 TRANSFAC + 15475420 15475431 1.0E-06 AATCCCCACCCT 12 V_BCL6_01_M01183 TRANSFAC + 15474146 15474161 9.0E-06 CAATAAGAAATGATTT 16 V_POU5F1_02_M02245 TRANSFAC - 15474136 15474150 0.0E+00 TATTGTCATGTAAAT 15 V_OCT1_Q5_01_M00930 TRANSFAC + 15474134 15474144 3.0E-06 TAATTTACATG 11 V_FOXO3A_Q1_M01137 TRANSFAC + 15474096 15474107 0.0E+00 TATAAATAAGTT 12 V_HFH4_01_M00742 TRANSFAC - 15476630 15476642 7.0E-06 TTGAGTTTGCTTT 13 V_P53_02_M00272 TRANSFAC - 15474082 15474091 7.0E-06 AGACATGCTT 10 V_MEF2A_Q6_M02024 TRANSFAC - 15474094 15474103 8.0E-06 TATTTATACC 10 V_SOX7_03_M02807 TRANSFAC + 15474137 15474158 5.0E-06 TTTACATGACAATAAGAAATGA 22 V_TGIF_02_M01346 TRANSFAC - 15475257 15475273 3.0E-06 TAAAATGACAGCAGCCT 17 V_ZFP105_03_M02827 TRANSFAC + 15473907 15473921 1.0E-06 TACAAACAACAACCA 15 V_HOXB13_01_M01467 TRANSFAC - 15475265 15475280 9.0E-06 CGACCCATAAAATGAC 16 V_SOX8_04_M02912 TRANSFAC + 15474041 15474054 1.0E-06 ACATTCATGACCAG 14 V_RSRFC4_Q2_M00407 TRANSFAC + 15474092 15474108 4.0E-06 CAGGTATAAATAAGTTC 17 V_FOXK1_04_M02856 TRANSFAC + 15473909 15473923 8.0E-06 CAAACAACAACCAAA 15 V_SOX_Q6_M01014 TRANSFAC + 15475718 15475730 5.0E-06 CTCTTTGTGCTGT 13 V_OCT1_04_M00138 TRANSFAC - 15474129 15474151 7.0E-06 TTATTGTCATGTAAATTACCCTT 23 V_MUSCLE_INI_B_M00321 TRANSFAC - 15475383 15475403 5.0E-06 TGCCGCCGCCACCACCGCGGC 21 V_HFH1_01_M00129 TRANSFAC - 15473906 15473917 7.0E-06 TGTTGTTTGTAT 12 V_TGIF1_01_M03111 TRANSFAC - 15475257 15475273 3.0E-06 TAAAATGACAGCAGCCT 17 V_OCT4_02_M01124 TRANSFAC - 15474135 15474149 0.0E+00 ATTGTCATGTAAATT 15 V_OCT_Q6_M00795 TRANSFAC + 15474134 15474144 5.0E-06 TAATTTACATG 11 V_HOXD9_Q2_M01834 TRANSFAC - 15475269 15475278 2.0E-06 ACCCATAAAA 10 V_HFH8_01_M00294 TRANSFAC - 15473905 15473917 7.0E-06 TGTTGTTTGTATG 13 V_GFI1_Q6_M01067 TRANSFAC - 15474151 15474163 5.0E-06 AGAAATCATTTCT 13 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 15475424 15475432 8.0E-06 GAGGGTGGG 9 V_CAAT_C_M00200 TRANSFAC + 15475417 15475441 4.0E-06 TCCAATCCCCACCCTCTCCATCCTT 25 V_HDX_01_M01333 TRANSFAC - 15474151 15474167 6.0E-06 AGATAGAAATCATTTCT 17 V_AIRE_01_M00999 TRANSFAC + 15476711 15476736 6.0E-06 CAGGTTAATGGATCCAAAGGTTTTCT 26 V_TCFAP2B_03_M02820 TRANSFAC + 15475820 15475833 8.0E-06 GCGCCCCAGGGCAC 14 V_NRF2_Q4_M00821 TRANSFAC + 15475436 15475448 4.0E-06 ATCCTTAGTCATT 13 V_ASCL2_04_M02841 TRANSFAC + 15475419 15475434 6.0E-06 CAATCCCCACCCTCTC 16 V_RSRFC4_01_M00026 TRANSFAC - 15474092 15474107 5.0E-06 AACTTATTTATACCTG 16 V_OCT1_06_M00162 TRANSFAC - 15474139 15474152 1.0E-06 CTTATTGTCATGTA 14 V_TITF1_Q3_M00432 TRANSFAC + 15476637 15476646 8.0E-06 ACTCAAGAAT 10 V_OCT1_07_M00248 TRANSFAC - 15474135 15474146 6.0E-06 GTCATGTAAATT 12 V_SOX2_01_M02246 TRANSFAC - 15474137 15474151 0.0E+00 TTATTGTCATGTAAA 15 V_HFH3_01_M00289 TRANSFAC - 15473905 15473917 4.0E-06 TGTTGTTTGTATG 13 V_MEF2A_05_M01301 TRANSFAC + 15474093 15474104 8.0E-06 AGGTATAAATAA 12 V_ESR2_01_M02377 TRANSFAC - 15475826 15475843 8.0E-06 CTGGGCCATCGTGCCCTG 18 V_NANOG_02_M01247 TRANSFAC + 15474137 15474156 0.0E+00 TTTACATGACAATAAGAAAT 20 V_OCT4_01_M01125 TRANSFAC - 15474136 15474150 0.0E+00 TATTGTCATGTAAAT 15 V_TCF11_01_M00285 TRANSFAC + 15475265 15475277 4.0E-06 GTCATTTTATGGG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.