Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PTPRD Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5789 protein tyrosine phosphatase, receptor type, D chr9 - 10612223 - 10617723 10612723 Transcription Factor Binding Sites   Download all TFBS in the PTPRD promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 10614546 10614563 3.0E-06 TGTGTACATATTTTTGTA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 10614546 10614563 9.0E-06 TACAAAAATATGTACACA 18 EVX2_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 2.0E-06 AATAATTAGC 10 VSX1_homeodomain_full_monomeric_11_1 SELEX + 10612662 10612672 5.0E-06 TGCTAATTATT 11 VSX2_homeodomain_DBD_monomeric_8_1 SELEX + 10612664 10612671 5.0E-06 CTAATTAT 8 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 4.0E-06 AATAATTAGC 10 Tp53_p53l_DBD_dimeric_18_1 SELEX + 10614531 10614548 2.0E-06 GCAAGTGTGTGTGCATGT 18 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 10614554 10614567 5.0E-06 TAATTACAAAAATA 14 EVX1_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 2.0E-06 AATAATTAGC 10 STAT1_MA0137.2 JASPAR - 10614481 10614495 1.0E-06 CATTTCCAAGAACCT 15 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 10614548 10614561 6.0E-06 CAAAAATATGTACA 14 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 10614470 10614480 5.0E-06 ATCACTTAAAA 11 POU6F2_POU_DBD_dimeric_16_1 SELEX - 10614553 10614568 7.0E-06 ATAATTACAAAAATAT 16 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 8.0E-06 AATAATTAGC 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 10614457 10614470 8.0E-06 ACAAACAGTCATCA 14 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 1.0E-05 AATAATTAGC 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 1.0E-06 AATAATTAGC 10 EMX1_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 8.0E-06 AATAATTAGC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 10613026 10613035 6.0E-06 AGCAGCTGCC 10 SOX9_HMG_full_dimeric_16_3 SELEX + 10614453 10614468 4.0E-06 ATGCACAAACAGTCAT 16 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 10614529 10614543 5.0E-06 CACACACACTTGCAC 15 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 9.0E-06 AATAATTAGC 10 POU6F2_POU_full_monomeric_10_1 SELEX + 10612663 10612672 5.0E-06 GCTAATTATT 10 Pou5f1_MA0142.1 JASPAR - 10610049 10610063 3.0E-06 TCTTGTTATTCAGAT 15 Myf_MA0055.1 JASPAR - 10613025 10613036 2.0E-06 CGGCAGCTGCTG 12 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 10614470 10614480 3.0E-06 ATCACTTAAAA 11 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 10614554 10614567 1.0E-05 TAATTACAAAAATA 14 EMX2_homeodomain_DBD_monomeric_10_1 SELEX - 10612663 10612672 9.0E-06 AATAATTAGC 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 10614470 10614480 5.0E-06 ATCACTTAAAA 11 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 10614457 10614470 7.0E-06 ACAAACAGTCATCA 14 V_HNF3B_01_M00131 TRANSFAC + 10614549 10614563 9.0E-06 GTACATATTTTTGTA 15 V_STAT5A_Q6_M01890 TRANSFAC - 10614484 10614496 2.0E-06 TCATTTCCAAGAA 13 V_ZSCAN4_03_M02838 TRANSFAC + 10614542 10614558 3.0E-06 TGCATGTGTACATATTT 17 V_EVI1_05_M00082 TRANSFAC + 10614494 10614504 4.0E-06 TGACAAGATAT 11 V_ATF5_01_M01295 TRANSFAC + 10614649 10614659 2.0E-06 CTTCTCCCTTT 11 V_ALX4_01_M00619 TRANSFAC - 10612666 10612678 8.0E-06 CTTCAGAATAATT 13 V_CEBP_Q3_M00770 TRANSFAC + 10614554 10614565 4.0E-06 TATTTTTGTAAT 12 V_SOX30_03_M02804 TRANSFAC + 10610059 10610074 6.0E-06 CAAGAACAATTGCATA 16 V_DLX3_01_M01400 TRANSFAC - 10614557 10614573 1.0E-06 TTTGTATAATTACAAAA 17 V_HMGIY_Q3_M01010 TRANSFAC - 10614510 10614524 7.0E-06 GGTGTAATTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 10614489 10614503 0.0E+00 GGAAATGACAAGATA 15 V_GM397_03_M02760 TRANSFAC - 10614541 10614557 9.0E-06 AATATGTACACATGCAC 17 V_GM397_03_M02760 TRANSFAC + 10614542 10614558 4.0E-06 TGCATGTGTACATATTT 17 V_STAT_Q6_M00777 TRANSFAC - 10614438 10614450 1.0E-05 GAACCTTCTTGGA 13 V_POU5F1_02_M02245 TRANSFAC - 10610049 10610063 3.0E-06 TCTTGTTATTCAGAT 15 V_MAFB_03_M02879 TRANSFAC - 10614553 10614567 0.0E+00 TAATTACAAAAATAT 15 V_PROP1_01_M01294 TRANSFAC - 10614510 10614520 5.0E-06 TAATTTTTTTT 11 V_STAT5B_01_M00459 TRANSFAC + 10614481 10614495 6.0E-06 AGGTTCTTGGAAATG 15 V_STAT5B_01_M00459 TRANSFAC - 10614481 10614495 8.0E-06 CATTTCCAAGAACCT 15 V_AP2_Q6_M00189 TRANSFAC - 10613106 10613117 7.0E-06 CGCCCGCCGGAG 12 V_DLX2_01_M01468 TRANSFAC - 10614556 10614571 8.0E-06 TGTATAATTACAAAAA 16 V_AFP1_Q6_M00616 TRANSFAC + 10614513 10614523 3.0E-06 AAAAATTACAC 11 V_SP1_02_M01303 TRANSFAC + 10613124 10613134 3.0E-06 GGGGCGGGGAG 11 V_GM497_04_M02864 TRANSFAC + 10613003 10613018 3.0E-06 ACAGGCACACACCCCA 16 V_SOX21_03_M02803 TRANSFAC + 10614554 10614569 4.0E-06 TATTTTTGTAATTATA 16 V_SOX21_03_M02803 TRANSFAC - 10614554 10614569 4.0E-06 TATAATTACAAAAATA 16 V_TCFAP2E_04_M02926 TRANSFAC + 10614504 10614517 1.0E-06 TGAACGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 10614506 10614519 2.0E-06 AACGAAAAAAAATT 14 V_CEBPB_01_M00109 TRANSFAC - 10614515 10614528 6.0E-06 ATATGGTGTAATTT 14 V_CDP_04_M01344 TRANSFAC - 10614462 10614476 5.0E-06 AAGTGATGATGACTG 15 V_ELF4_04_M02850 TRANSFAC + 10614505 10614521 8.0E-06 GAACGAAAAAAAATTAC 17 V_ELF4_04_M02850 TRANSFAC - 10614549 10614565 8.0E-06 ATTACAAAAATATGTAC 17 V_SOX13_03_M02797 TRANSFAC + 10610058 10610073 4.0E-06 ACAAGAACAATTGCAT 16 V_SOX7_03_M02807 TRANSFAC + 10610056 10610077 1.0E-06 TAACAAGAACAATTGCATAATA 22 V_MYF_01_M01302 TRANSFAC - 10613025 10613036 2.0E-06 CGGCAGCTGCTG 12 V_PR_01_M00954 TRANSFAC - 10610055 10610081 9.0E-06 GTTTTATTATGCAATTGTTCTTGTTAT 27 V_ZFP105_03_M02827 TRANSFAC + 10614506 10614520 7.0E-06 AACGAAAAAAAATTA 15 V_TEF_Q6_M00672 TRANSFAC + 10614553 10614564 5.0E-06 ATATTTTTGTAA 12 V_SOX1_04_M02906 TRANSFAC - 10610059 10610073 4.0E-06 ATGCAATTGTTCTTG 15 V_IRX4_01_M01410 TRANSFAC - 10614719 10614735 2.0E-06 AAAGTTCATGTAAAACC 17 V_HOXB6_01_M01460 TRANSFAC + 10614556 10614571 4.0E-06 TTTTTGTAATTATACA 16 V_HOXB6_01_M01460 TRANSFAC - 10614558 10614573 2.0E-06 TTTGTATAATTACAAA 16 V_MAZ_Q6_01_M02023 TRANSFAC + 10612781 10612794 1.0E-05 CTGGGAGGGGAGCG 14 V_STAT5A_02_M00460 TRANSFAC - 10614469 10614492 5.0E-06 TTCCAAGAACCTTTTTAAGTGATG 24 V_GSH2_01_M01326 TRANSFAC - 10612659 10612674 1.0E-05 AGAATAATTAGCAGGA 16 V_ASCL2_03_M02737 TRANSFAC + 10613023 10613039 4.0E-06 TCCAGCAGCTGCCGCTC 17 V_ELF5_01_M01197 TRANSFAC - 10613059 10613069 1.0E-05 TTAAGGAAATG 11 V_CUX1_04_M02959 TRANSFAC - 10614462 10614476 5.0E-06 AAGTGATGATGACTG 15 V_HOX13_01_M00023 TRANSFAC - 10612652 10612681 8.0E-06 TGCCTTCAGAATAATTAGCAGGACCCAAGC 30 V_OCT1_04_M00138 TRANSFAC - 10614548 10614570 5.0E-06 GTATAATTACAAAAATATGTACA 23 V_OCT1_04_M00138 TRANSFAC - 10614714 10614736 7.0E-06 GAAAGTTCATGTAAAACCATTAT 23 V_EVI1_Q3_M02002 TRANSFAC - 10614495 10614503 2.0E-06 TATCTTGTC 9 V_SOX12_04_M02900 TRANSFAC + 10614563 10614578 2.0E-06 AATTATACAAAGCACT 16 V_STAT3_03_M01595 TRANSFAC + 10614482 10614497 9.0E-06 GGTTCTTGGAAATGAC 16 V_IRX3_02_M01485 TRANSFAC - 10614719 10614735 4.0E-06 AAAGTTCATGTAAAACC 17 V_DLX7_01_M01486 TRANSFAC - 10614557 10614573 3.0E-06 TTTGTATAATTACAAAA 17 V_SOX15_03_M02799 TRANSFAC + 10610058 10610074 5.0E-06 ACAAGAACAATTGCATA 17 V_MTF1_06_M02882 TRANSFAC - 10614554 10614567 6.0E-06 TAATTACAAAAATA 14 V_POU6F1_02_M01462 TRANSFAC - 10612659 10612675 7.0E-06 CAGAATAATTAGCAGGA 17 V_CEBPA_01_M00116 TRANSFAC - 10614554 10614567 1.0E-06 TAATTACAAAAATA 14 V_OCT1_Q6_M00195 TRANSFAC + 10614563 10614577 8.0E-06 AATTATACAAAGCAC 15 V_MSX1_02_M01412 TRANSFAC + 10612659 10612674 6.0E-06 TCCTGCTAATTATTCT 16 V_STAT1STAT1_Q3_M01212 TRANSFAC - 10614482 10614494 6.0E-06 ATTTCCAAGAACC 13 V_IRX2_01_M01405 TRANSFAC - 10614719 10614735 1.0E-05 AAAGTTCATGTAAAACC 17 V_SOX8_03_M02808 TRANSFAC - 10610058 10610074 6.0E-06 TATGCAATTGTTCTTGT 17 V_STAT5A_01_M00457 TRANSFAC + 10614481 10614495 4.0E-06 AGGTTCTTGGAAATG 15 V_STAT5A_01_M00457 TRANSFAC - 10614481 10614495 4.0E-06 CATTTCCAAGAACCT 15 V_SRF_06_M02916 TRANSFAC + 10614505 10614521 8.0E-06 GAACGAAAAAAAATTAC 17 V_POU6F1_03_M01479 TRANSFAC - 10612659 10612675 3.0E-06 CAGAATAATTAGCAGGA 17 V_SATB1_01_M01232 TRANSFAC + 10614556 10614567 9.0E-06 TTTTTGTAATTA 12 V_PAX4_02_M00377 TRANSFAC - 10612663 10612673 1.0E-06 GAATAATTAGC 11 V_PAX4_02_M00377 TRANSFAC + 10614512 10614522 3.0E-06 AAAAAATTACA 11 V_SOX12_03_M02796 TRANSFAC - 10610057 10610070 5.0E-06 CAATTGTTCTTGTT 14 V_SOX12_03_M02796 TRANSFAC + 10612665 10612678 7.0E-06 TAATTATTCTGAAG 14 V_MAFK_04_M02880 TRANSFAC + 10614511 10614525 1.0E-06 AAAAAAATTACACCA 15 V_ZFP128_04_M02932 TRANSFAC + 10614558 10614571 4.0E-06 TTTGTAATTATACA 14 V_ZFP128_04_M02932 TRANSFAC - 10614558 10614571 1.0E-06 TGTATAATTACAAA 14 V_IRXB3_01_M01377 TRANSFAC - 10614719 10614735 7.0E-06 AAAGTTCATGTAAAACC 17 V_TCF3_05_M02920 TRANSFAC + 10614505 10614519 1.0E-06 GAACGAAAAAAAATT 15 V_STAT1_05_M01260 TRANSFAC + 10614481 10614502 0.0E+00 AGGTTCTTGGAAATGACAAGAT 22 V_EVI1_03_M00080 TRANSFAC - 10610042 10610052 6.0E-06 AGATCAGATAA 11 V_EVI1_03_M00080 TRANSFAC + 10614494 10614504 2.0E-06 TGACAAGATAT 11 V_PAX4_04_M00380 TRANSFAC - 10614532 10614561 8.0E-06 CAAAAATATGTACACATGCACACACACTTG 30 V_HOXA4_Q2_M00640 TRANSFAC - 10612664 10612671 5.0E-06 ATAATTAG 8 V_SOX14_03_M02798 TRANSFAC + 10614554 10614569 7.0E-06 TATTTTTGTAATTATA 16 V_SOX14_03_M02798 TRANSFAC - 10614554 10614569 3.0E-06 TATAATTACAAAAATA 16 V_CEBPA_Q6_M01866 TRANSFAC + 10614554 10614566 6.0E-06 TATTTTTGTAATT 13 V_HSF1_Q6_01_M02017 TRANSFAC - 10614437 10614450 6.0E-06 GAACCTTCTTGGAT 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.